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Lag0027140 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027140
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRRM domain-containing protein
Genome locationchr10:45361146..45362815
RNA-Seq ExpressionLag0027140
SyntenyLag0027140
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG0451244.1 hypothetical protein HPP92_026544 [Vanilla planifolia]5.6e-1066.04Show/hide
Query:  GQNEGSTSEKLGEAFSKFGEVVQEEAEKGMKGMDAQFFDGWVIFAGYARPRSP
        G ++ +TSE L EAFSKFGEVV + A +G+KGMD +F DGWVIFA YARPR P
Subjt:  GQNEGSTSEKLGEAFSKFGEVVQEEAEKGMKGMDAQFFDGWVIFAGYARPRSP

KAG9444964.1 hypothetical protein H6P81_016304 [Aristolochia fimbriata]2.8e-0948.1Show/hide
Query:  VAGQNEGSTSEKLGEAFSKFGEVVQ-----------------------EEAEKGMKGMDAQFFDGWVIFAGYARPRSPQ
        V+G N+ +TS+KL EAFSKFGEV+                        ++AE+G+KGMD QF DGWVIFA YARPR+P+
Subjt:  VAGQNEGSTSEKLGEAFSKFGEVVQ-----------------------EEAEKGMKGMDAQFFDGWVIFAGYARPRSPQ

XP_011624062.1 glycine-rich RNA-binding protein 3, mitochondrial-like [Amborella trichopoda]6.7e-1143.75Show/hide
Query:  LRRFLQRS---FSSPAVLCPLPGYRVLPLFNCIFMGLFDVAGQNEGSTSEKLGEAFSKFGEVVQ-----------------------EEAEKGMKGMDAQ
        +RR L  S   FSSP    P P    +P        LF V+G N+ +TSEKL EAF KFGEVVQ                       EEAE G+KGMD Q
Subjt:  LRRFLQRS---FSSPAVLCPLPGYRVLPLFNCIFMGLFDVAGQNEGSTSEKLGEAFSKFGEVVQ-----------------------EEAEKGMKGMDAQ

Query:  FFDGWVIFAGYARPRSPQGYTSSPNKPI
        F DGWVIFA YARP++P         PI
Subjt:  FFDGWVIFAGYARPRSPQGYTSSPNKPI

XP_042455208.1 organelle RRM domain-containing protein 2, mitochondrial-like isoform X2 [Zingiber officinale]4.3e-1056.34Show/hide
Query:  VAGQNEGSTSEKLGEAFSKFGEVVQ-----EEAEKGMKGMDAQFFDGWVIFAGYARPR-SPQGYTSSPNKP
        V+G ++ +TSE L EAFSKFG+VV      EEA +G+KGMD +F DGWVIFA YARPR  P G   +P  P
Subjt:  VAGQNEGSTSEKLGEAFSKFGEVVQ-----EEAEKGMKGMDAQFFDGWVIFAGYARPR-SPQGYTSSPNKP

XP_042462953.1 organelle RRM domain-containing protein 2, mitochondrial-like isoform X2 [Zingiber officinale]5.6e-1056.34Show/hide
Query:  VAGQNEGSTSEKLGEAFSKFGEVVQ-----EEAEKGMKGMDAQFFDGWVIFAGYARPR-SPQGYTSSPNKP
        V+G ++ +TSE L EAFSKFG+VV      EEA +G+KGMD +F DGWVIFA YARPR  P G   +P  P
Subjt:  VAGQNEGSTSEKLGEAFSKFGEVVQ-----EEAEKGMKGMDAQFFDGWVIFAGYARPR-SPQGYTSSPNKP

TrEMBL top hitse value%identityAlignment
A0A2I0I5X5 organelle RRM domain-containing protein 2, mitochondrial-like5.2e-0936.31Show/hide
Query:  MKTVLSRRRILSVSRFSSQSKAAVS--TACSLTILSILVLTMITRSLRRFLQRSFSSPAVLCPLPGYRVLPLFNCIFMGLFDVAGQNEGSTSEKLGEAFS
        ++T+++ RR LS S FSSQ  AA S  TA   T                    +   PA   P+P        + +F     V+G N+ +TSE L EAF 
Subjt:  MKTVLSRRRILSVSRFSSQSKAAVS--TACSLTILSILVLTMITRSLRRFLQRSFSSPAVLCPLPGYRVLPLFNCIFMGLFDVAGQNEGSTSEKLGEAFS

Query:  KFGEVVQ-----------------------EEAEKGMKGMDAQFFDGWVIFAGYARPRSPQGYTSSPN
        KFG+VV                        E+A KG++GMDA+F +GWVIFA YARPR PQG T+  N
Subjt:  KFGEVVQ-----------------------EEAEKGMKGMDAQFFDGWVIFAGYARPRSPQGYTSSPN

A0A314YPA5 Glycine-rich RNA-binding protein 6 mitochondrial-like1.1e-0848.75Show/hide
Query:  VAGQNEGSTSEKLGEAFSKFGEVVQ-----------------------EEAEKGMKGMDAQFFDGWVIFAGYARPRSPQG
        VAG N+ +T EKL EAFS+FGEVV                        E+AEKG+KGMDAQF DGWVIF  +ARP+   G
Subjt:  VAGQNEGSTSEKLGEAFSKFGEVVQ-----------------------EEAEKGMKGMDAQFFDGWVIFAGYARPRSPQG

A0A5N6RLT8 RRM domain-containing protein1.8e-0946.67Show/hide
Query:  MGLFDVAGQNEGSTSEKLGEAFSKFGEVVQ-----------------------EEAEKGMKGMDAQFFDGWVIFAGYARPRSPQGYTSSP
        M LF V G N+ +TSEKL EAFS+FGEVV                        E+AE G+KGMD +  +GWVIFA +ARPR+P G ++SP
Subjt:  MGLFDVAGQNEGSTSEKLGEAFSKFGEVVQ-----------------------EEAEKGMKGMDAQFFDGWVIFAGYARPRSPQGYTSSP

B9I063 RRM domain-containing protein1.1e-0850Show/hide
Query:  VAGQNEGSTSEKLGEAFSKFGEVVQ-----------------------EEAEKGMKGMDAQFFDGWVIFAGYARPRSP
        V+G ++ +TSE L EAFSKFGEVVQ                       E+A +G+KGMD QF DGWVIFA YARPR P
Subjt:  VAGQNEGSTSEKLGEAFSKFGEVVQ-----------------------EEAEKGMKGMDAQFFDGWVIFAGYARPRSP

D7THR4 RRM domain-containing protein2.3e-0944.83Show/hide
Query:  VAGQNEGSTSEKLGEAFSKFGEVVQ-----------------------EEAEKGMKGMDAQFFDGWVIFAGYARPRSPQGYTSSPNK
        ++G N+ +TSEKL E  SKFGEVV                         +AE+G+KG+DAQF DGWVIFA +AR R+P GY +S  K
Subjt:  VAGQNEGSTSEKLGEAFSKFGEVVQ-----------------------EEAEKGMKGMDAQFFDGWVIFAGYARPRSPQGYTSSPNK

SwissProt top hitse value%identityAlignment
Q9FIU6 Organelle RRM domain-containing protein 2, mitochondrial1.7e-0453.49Show/hide
Query:  EEAEKGMKGMDAQFFDGWVIFAGYARPR------SPQGYTSSP
        E++ KG+ GMD +F DGWVIFA YARPR       PQ   S P
Subjt:  EEAEKGMKGMDAQFFDGWVIFAGYARPR------SPQGYTSSP

Arabidopsis top hitse value%identityAlignment
AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-0636.71Show/hide
Query:  VAGQNEGSTSEKLGEAFSKFGEVVQ-----------------------EEAEKGMKGMDAQFFDGWVIFAGYARPRSPQ
        V+G +  +T+EKL +AF+ FG++V                        E+AEK    M+A+F DGWVIF   ARPR P+
Subjt:  VAGQNEGSTSEKLGEAFSKFGEVVQ-----------------------EEAEKGMKGMDAQFFDGWVIFAGYARPRSPQ

AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-0553.49Show/hide
Query:  EEAEKGMKGMDAQFFDGWVIFAGYARPR------SPQGYTSSP
        E++ KG+ GMD +F DGWVIFA YARPR       PQ   S P
Subjt:  EEAEKGMKGMDAQFFDGWVIFAGYARPR------SPQGYTSSP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACTGTTCTATCTCGGAGAAGAATTCTCTCAGTTTCAAGGTTTTCTTCGCAATCCAAAGCTGCAGTTTCCACGGCCTGTTCTTTAACCATACTTTCAATTTTAGT
TCTAACGATGATAACCAGAAGCCTGCGCCGATTCCTTCAACGATCCTTTTCGTCTCCGGCTGTACTCTGCCCACTGCCTGGTTATAGGGTTCTGCCATTGTTTAACTGCA
TATTCATGGGATTGTTTGATGTTGCAGGGCAGAATGAGGGAAGTACATCTGAAAAACTTGGGGAAGCATTCTCCAAATTTGGTGAAGTTGTTCAGGAAGAAGCAGAGAAA
GGAATGAAAGGGATGGATGCACAGTTTTTTGATGGGTGGGTGATATTTGCAGGATATGCAAGGCCTAGAAGTCCCCAAGGGTATACATCTTCTCCAAATAAACCAATCTG
CTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAACTGTTCTATCTCGGAGAAGAATTCTCTCAGTTTCAAGGTTTTCTTCGCAATCCAAAGCTGCAGTTTCCACGGCCTGTTCTTTAACCATACTTTCAATTTTAGT
TCTAACGATGATAACCAGAAGCCTGCGCCGATTCCTTCAACGATCCTTTTCGTCTCCGGCTGTACTCTGCCCACTGCCTGGTTATAGGGTTCTGCCATTGTTTAACTGCA
TATTCATGGGATTGTTTGATGTTGCAGGGCAGAATGAGGGAAGTACATCTGAAAAACTTGGGGAAGCATTCTCCAAATTTGGTGAAGTTGTTCAGGAAGAAGCAGAGAAA
GGAATGAAAGGGATGGATGCACAGTTTTTTGATGGGTGGGTGATATTTGCAGGATATGCAAGGCCTAGAAGTCCCCAAGGGTATACATCTTCTCCAAATAAACCAATCTG
CTAG
Protein sequenceShow/hide protein sequence
MKTVLSRRRILSVSRFSSQSKAAVSTACSLTILSILVLTMITRSLRRFLQRSFSSPAVLCPLPGYRVLPLFNCIFMGLFDVAGQNEGSTSEKLGEAFSKFGEVVQEEAEK
GMKGMDAQFFDGWVIFAGYARPRSPQGYTSSPNKPIC