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Lag0027273 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027273
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:46376904..46378460
RNA-Seq ExpressionLag0027273
SyntenyLag0027273
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7801517.1 reverse transcriptase [Senna tora]5.0e-1938.67Show/hide
Query:  PFLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIRE
        PF K+N DA++++     G+G V RD  G ++    K VP  VDVD++EA A+   +  ARD    ++VVE DS +V+G +    S  S LGL+++ IR 
Subjt:  PFLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIRE

Query:  IAGHFQRWHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPSVLAAAVR
        +   F+R  F   RRE N VA   A + +      VWLE+ P VLA A++
Subjt:  IAGHFQRWHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPSVLAAAVR

KAF7806899.1 uncharacterized protein G2W53_039060 [Senna tora]8.5e-1938.67Show/hide
Query:  PFLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIRE
        PF K+N DA++++     G+G V RD  G ++    K VP   DVD++EA A+   +  ARD    ++VVE DST+V+G +    S  S LGL+++ IR 
Subjt:  PFLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIRE

Query:  IAGHFQRWHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPSVLAAAVR
        +   F+R  F   RRE N VA   A + +      VWLE+ P VLA A++
Subjt:  IAGHFQRWHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPSVLAAAVR

KAF7819670.1 uncharacterized protein G2W53_025125 [Senna tora]6.7e-1637.01Show/hide
Query:  FLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIREI
        FLKLN DA++R  +  S VG ++R+  G  ++   K       VD +EA+AV + L +A+    LN+ VE DS  V  L+ ++ +  S LG++IE+I E+
Subjt:  FLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIREI

Query:  AGHFQRWHFSLCRRELNRVAHEAARVAVE---DGMEG-VWLEEYPSVLAAAVRR
        +  F    F   RRE N++AH  A   VE   D +   VWLE+YP ++  A+R+
Subjt:  AGHFQRWHFSLCRRELNRVAHEAARVAVE---DGMEG-VWLEEYPSVLAAAVRR

XP_023887146.1 uncharacterized protein LOC111999255 [Quercus suber]5.2e-1632.62Show/hide
Query:  FLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIREI
        ++K+N D     +L  +G+GA++R++ G +M  F  ++P    V++VE +A R +LC A++ GF N++VE DS +V+  +     S S +G ++++++ +
Subjt:  FLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIREI

Query:  AGHFQRWHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYP
        A       F+  RR+ NRVAH  AR+A        W+E+ P
Subjt:  AGHFQRWHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYP

XP_023928118.1 uncharacterized protein LOC112039474 [Quercus suber]3.9e-1639.04Show/hide
Query:  KLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIREIAG
        KLN DA +   L  SGVGA++R+E GE+M T L  VP VVD  + E +A R ++  A   GF +LVVE D+  V+  +   E+  S LG +I++I+ +  
Subjt:  KLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIREIAG

Query:  HFQRWHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPSVLAAAV
         F+R  FS  RR  N VA+  AR A +   +  W+E+ P  +  A+
Subjt:  HFQRWHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPSVLAAAV

TrEMBL top hitse value%identityAlignment
A0A6J1DBJ7 uncharacterized protein LOC1110189739.5e-1635.03Show/hide
Query:  PFLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIR-
        P LK+N DA  R+    +GVG ++RD  G + LT ++++    DVD VE  AV + + +A + GF+   +ETDS  +  L+  +    SE+G+L   I+ 
Subjt:  PFLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIR-

Query:  EIAGHFQRWHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYP----SVLAAAVRRR
         ++ H +R  FS   R  N  AH  A++A+      +W+EE+P    SVLA   R R
Subjt:  EIAGHFQRWHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYP----SVLAAAVRRR

A0A7J7GYW5 Uncharacterized protein1.6e-1534.87Show/hide
Query:  FLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIREI
        +LK+N D  + + L+  GVG V+R+  GE+M    + +PF VD D  EA A   ++ +ARD GF ++ +E DS  +V  +REE    SE G ++ +    
Subjt:  FLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIREI

Query:  AGHFQRWHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPSVLAAAVRRRV
           F R+H S   R+ N +AH  AR+A     + VW+ + P+ L A     V
Subjt:  AGHFQRWHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPSVLAAAVRRRV

A0A7J8WZ51 RNase H domain-containing protein4.7e-1534.72Show/hide
Query:  PFLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIRE
        P++KLN DAT +  L +S  G ++R+EKGE+M + + +   ++DV L EA+A    L  A++ GF+N+ VE D+ +V+  I + E   ++L  +I +I+ 
Subjt:  PFLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIRE

Query:  IAGHFQRWHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPSV
            F    F   RRE N+VAH  A+          W+E+ P+V
Subjt:  IAGHFQRWHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPSV

A0A7J9JAF5 RNase H domain-containing protein (Fragment)8.0e-1534.97Show/hide
Query:  FLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIREI
        ++KLN DA  +    +S  G ++R+EKGE+M + + +   ++DV LVEA+A    L  A++ GF+N+ VE D+ +V+  I +EE   ++L  +I +I+  
Subjt:  FLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIREI

Query:  AGHFQRWHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPSV
          +F    F   RRE N+VAH  AR          W+E+ P+V
Subjt:  AGHFQRWHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPSV

A0A7J9L182 Uncharacterized protein4.7e-1534.72Show/hide
Query:  PFLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIRE
        P++KLN DAT +  L +S  G ++R+EKGE+M + + +   ++DV L EA+A    L  A++ GF+N+ VE D+ +V+  I + E   ++L  +I +I+ 
Subjt:  PFLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIRE

Query:  IAGHFQRWHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPSV
            F    F   RRE N+V+H  AR          W+E+ P+V
Subjt:  IAGHFQRWHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPSV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.1e-0725.38Show/hide
Query:  YPFLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIR
        Y ++K NTDAT +    + G+G ++R+E G ++    + +P   +V   E  A+R ++       +  ++ E+D+  +V L+  ++   + L   +E+I+
Subjt:  YPFLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIR

Query:  EIAGHFQRWHFSLCRRELNRVAHEAARVAV
        ++  HF+   F    R  N+VA   AR ++
Subjt:  EIAGHFQRWHFSLCRRELNRVAHEAARVAV

AT4G29090.1 Ribonuclease H-like superfamily protein2.7e-0727.56Show/hide
Query:  YPFLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIR
        + ++K NTDAT  R+ ++ G+G V+R+EKGE+     + +P +  V   E  A+R ++       +  ++ E+DS +++ ++  +E   S L   I++++
Subjt:  YPFLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIR

Query:  EIAGHFQRWHFSLCRRELNRVAHEAAR
         +   F    F    RE N +A   AR
Subjt:  EIAGHFQRWHFSLCRRELNRVAHEAAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACCCGTTCCTTAAATTAAACACAGATGCAACAATCAGACGAAATCTTCAACAAAGTGGTGTGGGTGCAGTAGTAAGAGATGAAAAGGGAGAGATTATGCTTACCTT
TCTCAAAGTGGTGCCGTTTGTTGTTGATGTGGATCTTGTCGAAGCTATGGCTGTGCGTGATAGCCTGTGTGTGGCGAGGGACTGTGGCTTCTTGAACCTTGTAGTAGAGA
CGGACTCGACGATGGTGGTGGGTCTGATTAGAGAGGAGGAATCGAGTGCGTCGGAGCTTGGCCTGCTGATTGAGGAGATTCGTGAAATCGCTGGCCATTTTCAACGGTGG
CACTTCTCCTTGTGCCGTCGGGAGCTGAATAGAGTTGCACACGAGGCGGCACGAGTGGCGGTGGAGGACGGAATGGAGGGGGTGTGGCTGGAGGAGTACCCATCGGTTCT
AGCTGCTGCTGTCCGAAGGAGAGTGTTTCGAGGAGGCTCCTGGAGTGAATGGAGCTATGTCGATGATAGATCAGATTACCTTCACGCCCTTATCAGCAAAAGTACAAGCA
ATTTTACATGGTTTAAGGCTGCTTCAACAACTCTAATACCAAGATGTCCACATTTTTTCAGACTCTTTAATCACTGTGAATATGGTGAAAGGATAGCAACAAGACACATC
AGAGGATCACCATTGGATTGCCCAAATTCAAGAATTTGGCAAGACTTTCTCTTCTTTTCATATTTCCTTTGTTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTACCCGTTCCTTAAATTAAACACAGATGCAACAATCAGACGAAATCTTCAACAAAGTGGTGTGGGTGCAGTAGTAAGAGATGAAAAGGGAGAGATTATGCTTACCTT
TCTCAAAGTGGTGCCGTTTGTTGTTGATGTGGATCTTGTCGAAGCTATGGCTGTGCGTGATAGCCTGTGTGTGGCGAGGGACTGTGGCTTCTTGAACCTTGTAGTAGAGA
CGGACTCGACGATGGTGGTGGGTCTGATTAGAGAGGAGGAATCGAGTGCGTCGGAGCTTGGCCTGCTGATTGAGGAGATTCGTGAAATCGCTGGCCATTTTCAACGGTGG
CACTTCTCCTTGTGCCGTCGGGAGCTGAATAGAGTTGCACACGAGGCGGCACGAGTGGCGGTGGAGGACGGAATGGAGGGGGTGTGGCTGGAGGAGTACCCATCGGTTCT
AGCTGCTGCTGTCCGAAGGAGAGTGTTTCGAGGAGGCTCCTGGAGTGAATGGAGCTATGTCGATGATAGATCAGATTACCTTCACGCCCTTATCAGCAAAAGTACAAGCA
ATTTTACATGGTTTAAGGCTGCTTCAACAACTCTAATACCAAGATGTCCACATTTTTTCAGACTCTTTAATCACTGTGAATATGGTGAAAGGATAGCAACAAGACACATC
AGAGGATCACCATTGGATTGCCCAAATTCAAGAATTTGGCAAGACTTTCTCTTCTTTTCATATTTCCTTTGTTCCTAG
Protein sequenceShow/hide protein sequence
MYPFLKLNTDATIRRNLQQSGVGAVVRDEKGEIMLTFLKVVPFVVDVDLVEAMAVRDSLCVARDCGFLNLVVETDSTMVVGLIREEESSASELGLLIEEIREIAGHFQRW
HFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPSVLAAAVRRRVFRGGSWSEWSYVDDRSDYLHALISKSTSNFTWFKAASTTLIPRCPHFFRLFNHCEYGERIATRHI
RGSPLDCPNSRIWQDFLFFSYFLCS