; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0027305 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027305
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr10:46599826..46603718
RNA-Seq ExpressionLag0027305
SyntenyLag0027305
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023876176.1 uncharacterized protein LOC111988620 [Quercus suber]4.2e-1741.54Show/hide
Query:  KNSEARTKSEADQRP-----RSHKAVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEVLIR
        +  E R + +  +RP     R+ +  +    RF  +TPLTA  + VL  I+D   L  P KL+SDP +R+R+KYC FH DHGH T EC  L+ +IE LIR
Subjt:  KNSEARTKSEADQRP-----RSHKAVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEVLIR

Query:  EGYLKGFVGNDRSKRPLPADQGRLKQRRPR
        +G L+ FV  +R  +P    Q R    RPR
Subjt:  EGYLKGFVGNDRSKRPLPADQGRLKQRRPR

XP_023916366.1 uncharacterized protein LOC112027956 [Quercus suber]4.2e-1735.26Show/hide
Query:  HDAMDLTQEDNQLKERERAGKLLYPTSIKKTKENDVG-KNSEARTKSEADQRPRSHKAVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPD
        H A +    ++ +  ++R  K L        ++++ G +  + RTK   D+  ++  + RNQ     +YTPL    E VL  I+D   LK PEK+R DP+
Subjt:  HDAMDLTQEDNQLKERERAGKLLYPTSIKKTKENDVG-KNSEARTKSEADQRPRSHKAVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPD

Query:  RRNRNKYCMFHGDHGHATRECIQLRDEIEVLIREGYLKGFVGNDRSKRPLPADQGRLKQRRPREMAEAEPLRG
        +RNR+KYC FH DHGH T EC  L+ +IE LIR+G LK F+G D     L   +G++++     + E   + G
Subjt:  RRNRNKYCMFHGDHGHATRECIQLRDEIEVLIREGYLKGFVGNDRSKRPLPADQGRLKQRRPREMAEAEPLRG

XP_030936440.1 uncharacterized protein LOC115961637 [Quercus lobata]6.5e-1855.68Show/hide
Query:  AVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEVLIREGYLKGFVGNDR
        +VRNQ     +YTPL AS E V   I+D   LK PEK++ DP++RNRNKYC FH DHGH T EC  L+ +IE LIR+G L+GF+G D+
Subjt:  AVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEVLIREGYLKGFVGNDR

XP_030950020.1 uncharacterized protein LOC115973918 [Quercus lobata]1.4e-1750Show/hide
Query:  KSEADQRPRSHKAVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEVLIREGYLKGFVGNDR
        K   D+R            R  +YTPL A  E VL  I+D   LK PEKL+ DP++RNRNKYC FH DHGH T EC  L+ +IE LIR+G L+GF+G D+
Subjt:  KSEADQRPRSHKAVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEVLIREGYLKGFVGNDR

XP_030970463.1 uncharacterized protein LOC115990823 [Quercus lobata]1.4e-1750Show/hide
Query:  KSEADQRPRSHKAVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEVLIREGYLKGFVGNDR
        K   D+R            R  +YTPL A  E VL  I+D   LK PEKL+ DP++RNRNKYC FH DHGH T EC  L+ +IE LIR+G L+GF+G D+
Subjt:  KSEADQRPRSHKAVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEVLIREGYLKGFVGNDR

TrEMBL top hitse value%identityAlignment
A0A5C7IR28 Retrotrans_gag domain-containing protein3.5e-1748.91Show/hide
Query:  DQRPRSHKAVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEVLIREGYLKGFV
        +  P + +  R   +++  Y  L A+ E +LAA+ +T LL +PE LR DP RRN+ KYC FHGD GH T EC  L+D IE LIR GYLK F+
Subjt:  DQRPRSHKAVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEVLIREGYLKGFV

A0A6I9U1W1 uncharacterized protein LOC1051711997.8e-1740.88Show/hide
Query:  KNSEARTKSEADQRPRSHKAVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEVLIREGYLK
        ++ E + ++E D R R    V     R+ RYTPLT + E V+  +++  LL+RPEK+R    ++N NKYC FH D GH T +C QL+DEIE LIR+GY K
Subjt:  KNSEARTKSEADQRPRSHKAVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEVLIREGYLK

Query:  GFVGNDRSKRPLPADQGRLKQRRPREMAEAEPLRGQA
          +  DR   P    + R ++R  R+ A A   R  A
Subjt:  GFVGNDRSKRPLPADQGRLKQRRPREMAEAEPLRGQA

A0A6I9UIB1 uncharacterized protein LOC1051738054.5e-1741.61Show/hide
Query:  KNSEARTKSEADQRPRSHKAVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEVLIREGYLK
        ++ E + ++E D R R    V     R+ RYTPLT + E V+  +++  LL+RPEK+R    +RN NKYC FH D GH T +C QL+DEIE LIR+GY K
Subjt:  KNSEARTKSEADQRPRSHKAVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEVLIREGYLK

Query:  GFVGNDRSKRPLPADQGRLKQRRPREMAEAEPLRGQA
          +  DR   P    + R ++R  R+ A A   R  A
Subjt:  GFVGNDRSKRPLPADQGRLKQRRPREMAEAEPLRGQA

A0A6J1DDR5 uncharacterized protein LOC1110201153.5e-1737.67Show/hide
Query:  KKTKENDVGKNSEARTKSEADQRP---------RSHKAVRNQKARFDRYTPLTASFEHVLAAIQDT---NLLKRPEKLRSDPDRRNRNKYCMFHGDHGHA
        KK  +   GK+ E       D+ P         R   +  N+   ++RYTP T     +L  I+++    LLKRPEKLR DP++RN++KYC+FH DHGH+
Subjt:  KKTKENDVGKNSEARTKSEADQRP---------RSHKAVRNQKARFDRYTPLTASFEHVLAAIQDT---NLLKRPEKLRSDPDRRNRNKYCMFHGDHGHA

Query:  TRECIQLRDEIEVLIREGYLKGFVGNDRSKRPLPADQGRLKQRRPR
        T  C +L+ +IE LI++ Y K FVG  RS      D+ +  +  PR
Subjt:  TRECIQLRDEIEVLIREGYLKGFVGNDRSKRPLPADQGRLKQRRPR

A0A7N2N9G0 Reverse transcriptase5.9e-1739.55Show/hide
Query:  KKTKENDVGKNSEARTKSEADQRPRSHKAVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIE
        +K +  +  +  + R K+    R R  +  R    RF  +TPLTA  + VL  I+D   L  P KL+SDP++R+R+KYC FH DHGH T +C  L+ +IE
Subjt:  KKTKENDVGKNSEARTKSEADQRPRSHKAVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIE

Query:  VLIREGYLKGFVGNDRSKRPLPADQGRLKQRRPR
         LIR+G L+ FV  +R+  P      R    RPR
Subjt:  VLIREGYLKGFVGNDRSKRPLPADQGRLKQRRPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCAAGGAGGCAAAACCGGCAAATGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTCGGCCCGACCCCTGCTCGGCCTCGGCCCATGGTCGAGGCCGAGCATATGG
TCGGCCTCGGCCATGGGCCGAGGCCGACCCTCGGCCCGCTCATGCGGGTCGAGTCCGTTTGGTCCCGTCTGGTCCCCACCGCCTCTGGATGCCCCGGTTTCGCCTGCTTC
GGAGCCGGTGTGGCGAGCACCACACCGGTGTGCAGGTTTACTGTCTTGCAGGCCACGTCTTCCCCCCTTCAACTACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGCA
ATTTTGGACCACCACAGCGTACGAGGACAACCGGGAGGAGATGGGACTAGGAAAGGGATCCAGAGAGAGACCATACCGACGGGCCAGGCCAACATGGCCCGACCCGTACG
GTCGGCCTCGGCCAAGGTCGAGGCCGACCACTCGGCCCGTTTGCGCGGGCTGAGTCCGTTTGCCTCCGTTCAGCCCCTACCGCTTCCAGCTGCCTTGGTCCAGCCTGCTT
CGCATCGGAGGCGGTGTGGCCTACACCACACCGGTGTCCAGCGATTCTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGCTTCTACAAATTCATTGTTGGTGTCACGTGAA
GGGCAAGTGGGTCGCTTGGCCAAATTTTGGCATCAACAGTTGGCGCCGTCTGTGGGGGAGAATGCTTGCCAGTTCGGATCGCACATCGGTGGTGATCTGCAGGATGGATC
GGGTTCAGAATCCAGAGTGGGAAACCTCGGGTATGAGCAGAAAGCGCCGAGCCAAACTGGGGTTGACCTCTGTACGGAAAAGGTCGACCCTAACTTCGGAGACTGTTGTA
AGGATCTGTGTGCCCACGATGCTATGGACCTAACCCAAGAGGACAACCAGCTGAAGGAGAGAGAGAGAGCCGGGAAGCTACTATATCCGACCAGCATCAAGAAGACAAAG
GAAAATGACGTCGGGAAAAATTCAGAGGCTCGGACAAAGTCCGAGGCCGACCAGAGGCCAAGGAGCCACAAGGCTGTGCGGAACCAAAAAGCCAGATTCGACAGGTATAC
ACCACTAACAGCTTCGTTTGAACATGTCTTGGCCGCAATACAGGACACAAATCTGTTGAAACGTCCAGAAAAGTTGAGATCAGACCCCGACAGGAGGAACAGAAACAAAT
ACTGCATGTTCCACGGAGACCACGGTCACGCAACCCGGGAATGCATACAATTGAGGGACGAGATAGAAGTCCTAATCCGAGAAGGTTACCTCAAGGGGTTCGTGGGGAAC
GACAGAAGCAAGAGGCCACTGCCAGCAGATCAAGGAAGGCTCAAGCAACGTCGGCCTCGGGAGATGGCCGAGGCCGAGCCTTTGAGGGGTCAAGCTATCCCCTTCCAATG
GAACATTGATTTCCTTTTCTTATGTCCTTTAGTTTCCAGTTTCTTGAAACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACCAAGGAGGCAAAACCGGCAAATGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTCGGCCCGACCCCTGCTCGGCCTCGGCCCATGGTCGAGGCCGAGCATATGG
TCGGCCTCGGCCATGGGCCGAGGCCGACCCTCGGCCCGCTCATGCGGGTCGAGTCCGTTTGGTCCCGTCTGGTCCCCACCGCCTCTGGATGCCCCGGTTTCGCCTGCTTC
GGAGCCGGTGTGGCGAGCACCACACCGGTGTGCAGGTTTACTGTCTTGCAGGCCACGTCTTCCCCCCTTCAACTACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGCA
ATTTTGGACCACCACAGCGTACGAGGACAACCGGGAGGAGATGGGACTAGGAAAGGGATCCAGAGAGAGACCATACCGACGGGCCAGGCCAACATGGCCCGACCCGTACG
GTCGGCCTCGGCCAAGGTCGAGGCCGACCACTCGGCCCGTTTGCGCGGGCTGAGTCCGTTTGCCTCCGTTCAGCCCCTACCGCTTCCAGCTGCCTTGGTCCAGCCTGCTT
CGCATCGGAGGCGGTGTGGCCTACACCACACCGGTGTCCAGCGATTCTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGCTTCTACAAATTCATTGTTGGTGTCACGTGAA
GGGCAAGTGGGTCGCTTGGCCAAATTTTGGCATCAACAGTTGGCGCCGTCTGTGGGGGAGAATGCTTGCCAGTTCGGATCGCACATCGGTGGTGATCTGCAGGATGGATC
GGGTTCAGAATCCAGAGTGGGAAACCTCGGGTATGAGCAGAAAGCGCCGAGCCAAACTGGGGTTGACCTCTGTACGGAAAAGGTCGACCCTAACTTCGGAGACTGTTGTA
AGGATCTGTGTGCCCACGATGCTATGGACCTAACCCAAGAGGACAACCAGCTGAAGGAGAGAGAGAGAGCCGGGAAGCTACTATATCCGACCAGCATCAAGAAGACAAAG
GAAAATGACGTCGGGAAAAATTCAGAGGCTCGGACAAAGTCCGAGGCCGACCAGAGGCCAAGGAGCCACAAGGCTGTGCGGAACCAAAAAGCCAGATTCGACAGGTATAC
ACCACTAACAGCTTCGTTTGAACATGTCTTGGCCGCAATACAGGACACAAATCTGTTGAAACGTCCAGAAAAGTTGAGATCAGACCCCGACAGGAGGAACAGAAACAAAT
ACTGCATGTTCCACGGAGACCACGGTCACGCAACCCGGGAATGCATACAATTGAGGGACGAGATAGAAGTCCTAATCCGAGAAGGTTACCTCAAGGGGTTCGTGGGGAAC
GACAGAAGCAAGAGGCCACTGCCAGCAGATCAAGGAAGGCTCAAGCAACGTCGGCCTCGGGAGATGGCCGAGGCCGAGCCTTTGAGGGGTCAAGCTATCCCCTTCCAATG
GAACATTGATTTCCTTTTCTTATGTCCTTTAGTTTCCAGTTTCTTGAAACCTTGA
Protein sequenceShow/hide protein sequence
MDQGGKTGKWDGPRPKGSGFRPDPCSASAHGRGRAYGRPRPWAEADPRPAHAGRVRLVPSGPHRLWMPRFRLLRSRCGEHHTGVQVYCLAGHVFPPSTTNLPLVAREGQA
ILDHHSVRGQPGGDGTRKGIQRETIPTGQANMARPVRSASAKVEADHSARLRGLSPFASVQPLPLPAALVQPASHRRRCGLHHTGVQRFLLVLQVTSSPASTNSLLVSRE
GQVGRLAKFWHQQLAPSVGENACQFGSHIGGDLQDGSGSESRVGNLGYEQKAPSQTGVDLCTEKVDPNFGDCCKDLCAHDAMDLTQEDNQLKERERAGKLLYPTSIKKTK
ENDVGKNSEARTKSEADQRPRSHKAVRNQKARFDRYTPLTASFEHVLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEVLIREGYLKGFVGN
DRSKRPLPADQGRLKQRRPREMAEAEPLRGQAIPFQWNIDFLFLCPLVSSFLKP