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Lag0027403 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027403
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr8:292945..294498
RNA-Seq ExpressionLag0027403
SyntenyLag0027403
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-4771.97Show/hide
Query:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE
        MSSSI++LLK ++LTGENYATWKS LN ILV+ DLRFVL E+CPP   +NASQ+VKDAYD WTKANDK  +Y+LASLS++L+K+HE MVTAR+IM+SLRE
Subjt:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE

Query:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREHV
        MFGQPS Q+  +A+KYVY+ RMKEG SVREHV
Subjt:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREHV

TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-4771.97Show/hide
Query:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE
        MSSSI++LLK ++LTGENYATWKS LN ILV+ DLRFVL E+CPP   +NASQ+VKDAYD WTKANDK  +Y+LASLS++L+K+HE MVTAR+IM+SLRE
Subjt:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE

Query:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREHV
        MFGQPS Q+  +A+KYVY+ RMKEG SVREHV
Subjt:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREHV

XP_022158568.1 uncharacterized protein LOC111025021 [Momordica charantia]1.9e-4861.31Show/hide
Query:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE
        MS+S + LL ++KL G+NY  WKSNLNTILV+DDLRFVLTE+CPPA A NA++TV+DAYDRW KAN+K RVYILAS+SEVL+K+HE + T REIM+SL+ 
Subjt:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE

Query:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREH---------VREHNPHVAAPASKKMFV---LPKEYYK
        +FGQPS  L HDA+KYVY+CRMKEG+SVREH         V E N  V    S+  F+   LPK Y++
Subjt:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREH---------VREHNPHVAAPASKKMFV---LPKEYYK

XP_022158791.1 uncharacterized protein LOC111025258 [Momordica charantia]1.5e-4860.71Show/hide
Query:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE
        MS+S + LL ++KL G+NY  WKSNLNTILV+DDLRFVLTE+CPPA A N++QTV+DA+DRW KAN+K RVYILAS+S+VL+K+HEG+ TAREIM+SL+ 
Subjt:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE

Query:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREH---------VREHNPHVAAPASKKMFV---LPKEYYK
        +FGQPS  + HDA+KYVY+CRMKEG+SVREH         V E N  V    S+  F+   LPK Y++
Subjt:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREH---------VREHNPHVAAPASKKMFV---LPKEYYK

XP_038882358.1 uncharacterized protein LOC120073622 [Benincasa hispida]8.0e-4768.18Show/hide
Query:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE
        M+SSI+ LL +EKL G+NY+ WKSNLNTILVVDDLRFVLTE+CP A   NA++TV++AYDRW KAN+K R+YILAS+S+VLAK+HE + TA+EI++SLRE
Subjt:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE

Query:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREHV
        +FGQPS+ L H+A+K++Y+ RMKEG SVREHV
Subjt:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREHV

TrEMBL top hitse value%identityAlignment
A0A5A7VA67 Gag/pol protein7.8e-4871.97Show/hide
Query:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE
        MSSSI++LLK ++LTGENYATWKS LN ILV+ DLRFVL E+CPP   +NASQ+VKDAYD WTKANDK  +Y+LASLS++L+K+HE MVTAR+IM+SLRE
Subjt:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE

Query:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREHV
        MFGQPS Q+  +A+KYVY+ RMKEG SVREHV
Subjt:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREHV

A0A5D3D0D9 Gag/pol protein7.8e-4871.97Show/hide
Query:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE
        MSSSI++LLK ++LTGENYATWKS LN ILV+ DLRFVL E+CPP   +NASQ+VKDAYD WTKANDK  +Y+LASLS++L+K+HE MVTAR+IM+SLRE
Subjt:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE

Query:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREHV
        MFGQPS Q+  +A+KYVY+ RMKEG SVREHV
Subjt:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREHV

A0A6J1DWG6 uncharacterized protein LOC1110250219.2e-4961.31Show/hide
Query:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE
        MS+S + LL ++KL G+NY  WKSNLNTILV+DDLRFVLTE+CPPA A NA++TV+DAYDRW KAN+K RVYILAS+SEVL+K+HE + T REIM+SL+ 
Subjt:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE

Query:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREH---------VREHNPHVAAPASKKMFV---LPKEYYK
        +FGQPS  L HDA+KYVY+CRMKEG+SVREH         V E N  V    S+  F+   LPK Y++
Subjt:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREH---------VREHNPHVAAPASKKMFV---LPKEYYK

A0A6J1E205 uncharacterized protein LOC1110252587.0e-4960.71Show/hide
Query:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE
        MS+S + LL ++KL G+NY  WKSNLNTILV+DDLRFVLTE+CPPA A N++QTV+DA+DRW KAN+K RVYILAS+S+VL+K+HEG+ TAREIM+SL+ 
Subjt:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE

Query:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREH---------VREHNPHVAAPASKKMFV---LPKEYYK
        +FGQPS  + HDA+KYVY+CRMKEG+SVREH         V E N  V    S+  F+   LPK Y++
Subjt:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREH---------VREHNPHVAAPASKKMFV---LPKEYYK

E2GK51 Gag/pol protein (Fragment)5.0e-4767.39Show/hide
Query:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE
        M++SIV LL +EKL G+NY+ WKSNLNTILVVDDLRFVLTE+CP A A NA++TV++AYDRW KANDK RVYILAS+++VLAK+H+ + TA+ IM+SLRE
Subjt:  MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLRE

Query:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREHVREHNPH
        MFGQPS+ L H+A+K++Y+ RMKEG SVREHV +   H
Subjt:  MFGQPSYQLHHDALKYVYSCRMKEGNSVREHVREHNPH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCCTCAATTGTCTCTCTGCTTAAAAATGAGAAATTAACCGGCGAAAATTATGCTACATGGAAGTCGAACCTGAATACGATTCTTGTTGTCGATGATCTGCGGTT
CGTCTTAACGGAGGATTGTCCTCCAGCCTCTGCTCGTAATGCATCCCAAACAGTTAAGGATGCTTATGACCGCTGGACAAAGGCCAATGATAAAACTCGCGTCTATATCT
TAGCCAGCTTATCTGAAGTTTTGGCTAAAAGGCATGAGGGCATGGTAACAGCGAGGGAGATTATGAACTCTCTCCGAGAGATGTTTGGACAACCGTCCTACCAACTCCAC
CATGACGCTCTCAAATACGTTTATAGCTGTCGCATGAAAGAGGGCAACTCTGTTCGGGAGCATGTACGGGAGCATAACCCTCACGTTGCTGCACCAGCATCCAAAAAAAT
GTTTGTGCTACCAAAAGAATATTACAAGAAAAGTCGTCGTTCATCGCCGTCGTTTGGTGAGTCGCCAACCTCCTTGCCGTGGCTTGGTCGCGCTCCCTTGAAATTCGGGA
TGCCTGGGCATCCTAGGATGCCCATACGGGAGGCATCCGAGGAACTTTTGATGCCCTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCCTCAATTGTCTCTCTGCTTAAAAATGAGAAATTAACCGGCGAAAATTATGCTACATGGAAGTCGAACCTGAATACGATTCTTGTTGTCGATGATCTGCGGTT
CGTCTTAACGGAGGATTGTCCTCCAGCCTCTGCTCGTAATGCATCCCAAACAGTTAAGGATGCTTATGACCGCTGGACAAAGGCCAATGATAAAACTCGCGTCTATATCT
TAGCCAGCTTATCTGAAGTTTTGGCTAAAAGGCATGAGGGCATGGTAACAGCGAGGGAGATTATGAACTCTCTCCGAGAGATGTTTGGACAACCGTCCTACCAACTCCAC
CATGACGCTCTCAAATACGTTTATAGCTGTCGCATGAAAGAGGGCAACTCTGTTCGGGAGCATGTACGGGAGCATAACCCTCACGTTGCTGCACCAGCATCCAAAAAAAT
GTTTGTGCTACCAAAAGAATATTACAAGAAAAGTCGTCGTTCATCGCCGTCGTTTGGTGAGTCGCCAACCTCCTTGCCGTGGCTTGGTCGCGCTCCCTTGAAATTCGGGA
TGCCTGGGCATCCTAGGATGCCCATACGGGAGGCATCCGAGGAACTTTTGATGCCCTCGTGA
Protein sequenceShow/hide protein sequence
MSSSIVSLLKNEKLTGENYATWKSNLNTILVVDDLRFVLTEDCPPASARNASQTVKDAYDRWTKANDKTRVYILASLSEVLAKRHEGMVTAREIMNSLREMFGQPSYQLH
HDALKYVYSCRMKEGNSVREHVREHNPHVAAPASKKMFVLPKEYYKKSRRSSPSFGESPTSLPWLGRAPLKFGMPGHPRMPIREASEELLMPS