CuGenDBv2

Gene ID	Lag0027532
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA-directed RNA polymerase III subunit RPC3
Genome location	chr8:1776442..1779291
RNA-Seq Expression	Lag0027532
Synteny	Lag0027532
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0003697 - single-stranded DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033658.1 DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo var. makuwa]

3.9e-29

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Query:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ
        GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRGAKAAKI E+P TLEQ L+E ARP+EVLRFS+G+ + E    E   Q
Subjt:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ

TYK22958.1 DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo var. makuwa]

3.9e-29

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Query:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ
        GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRGAKAAKI E+P TLEQ L+E ARP+EVLRFS+G+ + E    E   Q
Subjt:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ

XP_008439232.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo]

3.9e-29

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Query:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ
        GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRGAKAAKI E+P TLEQ L+E ARP+EVLRFS+G+ + E    E   Q
Subjt:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ

XP_008439235.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X2 [Cucumis melo]

3.9e-29

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Query:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ
        GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRGAKAAKI E+P TLEQ L+E ARP+EVLRFS+G+ + E    E   Q
Subjt:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ

XP_038878061.1 DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida]

5.1e-29

72.83

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Query:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ
        GN PIP++VHDSLFKLLNAHFVERCP PEP+LSP+VEEQPPP+KRGAKAAKISE+P TLEQ ++E+ARPMEVLRFS+G+ + E    E   Q
Subjt:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AYY3 DNA-directed RNA polymerase III subunit RPC3

1.9e-29

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Query:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ
        GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRGAKAAKI E+P TLEQ L+E ARP+EVLRFS+G+ + E    E   Q
Subjt:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ

A0A1S4DT15 DNA-directed RNA polymerase III subunit RPC3

1.9e-29

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Query:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ
        GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRGAKAAKI E+P TLEQ L+E ARP+EVLRFS+G+ + E    E   Q
Subjt:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ

A0A5A7SSU3 DNA-directed RNA polymerase III subunit RPC3

1.9e-29

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Query:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ
        GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRGAKAAKI E+P TLEQ L+E ARP+EVLRFS+G+ + E    E   Q
Subjt:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ

A0A5D3DHJ0 DNA-directed RNA polymerase III subunit RPC3

1.9e-29

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Query:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ
        GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRKRGAKAAKI E+P TLEQ L+E ARP+EVLRFS+G+ + E    E   Q
Subjt:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQ

A0A6J1HUV1 DNA-directed RNA polymerase III subunit RPC3

4.2e-29

73.68

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Query:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQEEH
        GN PIP+VV++SL KLLNAHFVERCP PEPTLSPQVEEQPPPRKRGAKAAK+SE+P TLEQ L+E+ARPMEV+RFSIGE + E       E+ EH
Subjt:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEGDQEEVPGEFQEQEEH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G49000.1 RNA polymerase III subunit RPC82 family protein

1.8e-11

46.75

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Query:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSI
        GN      + DSL KL+ A FVER P+PEP L    +E+ P ++RGAKAAKI + P TLE+ ++E A P++ +RF +
Subjt:  GNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSI

Sequences

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CDS sequence

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ATGGCTTCATCAATTTCCATCACATTTTGCTCTGTTTCTGTATTTCTCGTTCTTAGGGCTTTGATTTCTCCAGATTTTCACCAAATAATCGGAAACCATCCAATTCCAAA
TGTTGTACATGACAGTCTATTTAAACTTTTGAATGCCCATTTTGTCGAACGTTGTCCAACCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAACAACCTCCTCCTAGGA
AAAGAGGTGCTAAGGCTGCCAAGATATCTGAGATGCCAGCAACCTTAGAGCAACCTCTTCTAGAAACAGCCCGTCCAATGGAAGTTCTAAGATTTTCAATAGGTGAAGGA
GACCAAGAAGAGGTTCCAGGAGAGTTTCAAGAACAAGAAGAACATGTGGTTTTTCACCAAGCTCAGAATTCTTTTCCAATCCGTTCTTTATACGATTTGACTGTATACAA
TGGTGATGGTGGTTGCTCTTTTGGTTCTTCAAGTTTGATGTACGAGCAAGATTATGGTGACAAGAATGAAAGTGGCATGTACGAGAATTTTTGTTTTTTGGCGTAG

mRNA sequence

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Protein sequence

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MASSISITFCSVSVFLVLRALISPDFHQIIGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKRGAKAAKISEMPATLEQPLLETARPMEVLRFSIGEG
DQEEVPGEFQEQEEHVVFHQAQNSFPIRSLYDLTVYNGDGGCSFGSSSLMYEQDYGDKNESGMYENFCFLA

Lag0027532 (gene) of Sponge gourd (AG-4) v1 genome