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Lag0027543 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027543
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionWD40/YVTN repeat-like-containing domain containing protein
Genome locationchr8:1875928..1878350
RNA-Seq ExpressionLag0027543
SyntenyLag0027543
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055889.1 uncharacterized protein E6C27_scaffold438G00070 [Cucumis melo var. makuwa]8.8e-1894.12Show/hide
Query:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGT
        E+YDTHDPKGHC PVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSR T
Subjt:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGT

PON88602.1 WD40/YVTN repeat-like-containing domain containing protein [Trema orientale]5.2e-1879.69Show/hide
Query:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRG-TKPGTSPIFNISS
        ++YDTHDPKGHCL  LP LMKRTKVIEIVAARDIVFALAHSGVCAAFSRG  KP T+ I N+ S
Subjt:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRG-TKPGTSPIFNISS

XP_008463310.1 PREDICTED: uncharacterized protein LOC103501498 [Cucumis melo]8.8e-1894.12Show/hide
Query:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGT
        E+YDTHDPKGHC PVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSR T
Subjt:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGT

XP_022156222.1 uncharacterized protein LOC111023160 [Momordica charantia]8.8e-1894.12Show/hide
Query:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGT
        E+YDTHDPKGHC PVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSR T
Subjt:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGT

XP_022978161.1 uncharacterized protein LOC111478225 [Cucurbita maxima]8.8e-1894.12Show/hide
Query:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGT
        E+YDTHDPKGHC PVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSR T
Subjt:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGT

TrEMBL top hitse value%identityAlignment
A0A1S3CKI3 uncharacterized protein LOC1035014984.3e-1894.12Show/hide
Query:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGT
        E+YDTHDPKGHC PVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSR T
Subjt:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGT

A0A2P5EST3 WD40/YVTN repeat-like-containing domain containing protein2.5e-1879.69Show/hide
Query:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRG-TKPGTSPIFNISS
        ++YDTHDPKGHCL  LP LMKRTKVIEIVAARDIVFALAHSGVCAAFSRG  KP T+ I N+ S
Subjt:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRG-TKPGTSPIFNISS

A0A6A1WLU4 Uncharacterized protein4.3e-1894.12Show/hide
Query:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGT
        E+YDTHDPKGHC PVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSR T
Subjt:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGT

A0A6J1HNY3 uncharacterized protein LOC1114659994.3e-1894.12Show/hide
Query:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGT
        E+YDTHDPKGHC PVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSR T
Subjt:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGT

A0A6J1ILZ5 uncharacterized protein LOC1114782254.3e-1894.12Show/hide
Query:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGT
        E+YDTHDPKGHC PVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSR T
Subjt:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G38630.1 Transducin/WD40 repeat-like superfamily protein3.9e-1678.43Show/hide
Query:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGT
        E+YDTHDPKG+CL  LP L+KR+KVIEIVAARDIVFAL  SGVCA+FSR T
Subjt:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGT

AT2G40070.1 BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1)6.1e-0967.5Show/hide
Query:  GTKPGTSPIFNISSATPAPTRKTGADDFLNSDNDKNDYDW
        G+K GTSP+FNISS  P P+RK   DDFLNS+ DKNDY+W
Subjt:  GTKPGTSPIFNISSATPAPTRKTGADDFLNSDNDKNDYDW

AT2G40070.2 FUNCTIONS IN: molecular_function unknown6.1e-0967.5Show/hide
Query:  GTKPGTSPIFNISSATPAPTRKTGADDFLNSDNDKNDYDW
        G+K GTSP+FNISS  P P+RK   DDFLNS+ DKNDY+W
Subjt:  GTKPGTSPIFNISSATPAPTRKTGADDFLNSDNDKNDYDW

AT3G54190.1 Transducin/WD40 repeat-like superfamily protein9.1e-2193.88Show/hide
Query:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSR
        E+YDTHDPKGHCL  LPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSR
Subjt:  EKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTCGAGAATTAAATGATTCCATTGAGGAAGCTAAGGAAAAATATGATACTCATGATCCAAAGGGGCATTGCTTACCAGTTTTACCTTTTCTAATGAAGAGGAC
AAAAGTAATAGAAATTGTTGCTGCACGGGATATTGTTTTTGCACTTGCACATTCTGGTGTTTGTGCAGCTTTTAGTAGAGGAACAAAACCAGGAACTTCTCCAATATTTA
ATATCTCATCAGCGACTCCAGCCCCTACACGCAAGACTGGTGCTGATGATTTTCTTAATTCAGACAATGATAAAAATGATTATGATTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTTCGAGAATTAAATGATTCCATTGAGGAAGCTAAGGAAAAATATGATACTCATGATCCAAAGGGGCATTGCTTACCAGTTTTACCTTTTCTAATGAAGAGGAC
AAAAGTAATAGAAATTGTTGCTGCACGGGATATTGTTTTTGCACTTGCACATTCTGGTGTTTGTGCAGCTTTTAGTAGAGGAACAAAACCAGGAACTTCTCCAATATTTA
ATATCTCATCAGCGACTCCAGCCCCTACACGCAAGACTGGTGCTGATGATTTTCTTAATTCAGACAATGATAAAAATGATTATGATTGGTAA
Protein sequenceShow/hide protein sequence
MEFRELNDSIEEAKEKYDTHDPKGHCLPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRGTKPGTSPIFNISSATPAPTRKTGADDFLNSDNDKNDYDW