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Lag0027562 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027562
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionZinc finger, CCHC-type
Genome locationchr8:2057146..2057499
RNA-Seq ExpressionLag0027562
SyntenyLag0027562
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065903.1 reverse transcriptase [Cucumis melo var. makuwa]4.4e-0544.12Show/hide
Query:  IESNHEEIIMPQASMTRSRAKRLQKALNSYFQAKVTIYDQELHPFKLGKAPIQPKDTMNLKIQIHSHI
        I++N E IIM Q SMT++RAKR +  LN+  QA+ +++++EL   +L ++   P+  MNL+I+IHSH+
Subjt:  IESNHEEIIMPQASMTRSRAKRLQKALNSYFQAKVTIYDQELHPFKLGKAPIQPKDTMNLKIQIHSHI
TYK15114.1 Zinc finger, CCHC-type [Cucumis melo var. makuwa]4.4e-0544.12Show/hide
Query:  IESNHEEIIMPQASMTRSRAKRLQKALNSYFQAKVTIYDQELHPFKLGKAPIQPKDTMNLKIQIHSHI
        I++N E IIM Q SMT++RAKR +  LN+  QA+ +++++EL   +L ++   P+  MNL+I+IHSH+
Subjt:  IESNHEEIIMPQASMTRSRAKRLQKALNSYFQAKVTIYDQELHPFKLGKAPIQPKDTMNLKIQIHSHI
TrEMBL top hitse value%identityAlignment
A0A5A7VCL9 Reverse transcriptase2.1e-0544.12Show/hide
Query:  IESNHEEIIMPQASMTRSRAKRLQKALNSYFQAKVTIYDQELHPFKLGKAPIQPKDTMNLKIQIHSHI
        I++N E IIM Q SMT++RAKR +  LN+  QA+ +++++EL   +L ++   P+  MNL+I+IHSH+
Subjt:  IESNHEEIIMPQASMTRSRAKRLQKALNSYFQAKVTIYDQELHPFKLGKAPIQPKDTMNLKIQIHSHI
A0A5D3CW05 Zinc finger, CCHC-type2.1e-0544.12Show/hide
Query:  IESNHEEIIMPQASMTRSRAKRLQKALNSYFQAKVTIYDQELHPFKLGKAPIQPKDTMNLKIQIHSHI
        I++N E IIM Q SMT++RAKR +  LN+  QA+ +++++EL   +L ++   P+  MNL+I+IHSH+
Subjt:  IESNHEEIIMPQASMTRSRAKRLQKALNSYFQAKVTIYDQELHPFKLGKAPIQPKDTMNLKIQIHSHI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAGGACTCCTTCACCTCCTGATAAGGGAATAAGCAATCAAGAAGCGCAAGAAGAAGAATTGCAAGCTCCATCAGCTCAAGAAGAAGAACTTGAAGCTCCACTAGC
TCAATTAAGCTTGAATGAAGCTCCGGTGTCAACTCCAATTGAATCCAATCATGAGGAGATCATTATGCCACAAGCTTCAATGACAAGATCTAGAGCTAAAAGACTACAAA
AGGCATTAAATAGTTACTTCCAAGCTAAAGTGACTATCTATGACCAAGAGTTGCATCCATTCAAGCTTGGAAAGGCACCCATTCAACCAAAAGACACAATGAATCTAAAA
ATCCAGATTCATTCACATATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAGGACTCCTTCACCTCCTGATAAGGGAATAAGCAATCAAGAAGCGCAAGAAGAAGAATTGCAAGCTCCATCAGCTCAAGAAGAAGAACTTGAAGCTCCACTAGC
TCAATTAAGCTTGAATGAAGCTCCGGTGTCAACTCCAATTGAATCCAATCATGAGGAGATCATTATGCCACAAGCTTCAATGACAAGATCTAGAGCTAAAAGACTACAAA
AGGCATTAAATAGTTACTTCCAAGCTAAAGTGACTATCTATGACCAAGAGTTGCATCCATTCAAGCTTGGAAAGGCACCCATTCAACCAAAAGACACAATGAATCTAAAA
ATCCAGATTCATTCACATATTTAA
Protein sequenceShow/hide protein sequence
MVRTPSPPDKGISNQEAQEEELQAPSAQEEELEAPLAQLSLNEAPVSTPIESNHEEIIMPQASMTRSRAKRLQKALNSYFQAKVTIYDQELHPFKLGKAPIQPKDTMNLK
IQIHSHI