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Lag0027603 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027603
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr8:2432196..2432654
RNA-Seq ExpressionLag0027603
SyntenyLag0027603
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7825130.1 putative RNA-directed DNA polymerase [Senna tora]1.4e-0832.5Show/hide
Query:  VQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQD-SLCSFLFVPRSGNVVTHRLASLAQAQRSDQTWIEGW
        V  +DL EA+A +EG+ L+ ++    I++E D+++V++ ++ S+ +LS  G+LI   + ++   S     + PR+ N+V HR+A+ A      Q W+E  
Subjt:  VQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQD-SLCSFLFVPRSGNVVTHRLASLAQAQRSDQTWIEGW

Query:  LSEIVDVIVSKCLVPILVSI
         S I DV++S C     +SI
Subjt:  LSEIVDVIVSKCLVPILVSI

KAG8479649.1 hypothetical protein CXB51_029410 [Gossypium anomalum]1.0e-0636.54Show/hide
Query:  RFLGL-VQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQD-SLCSFLFVPRSGNVVTHRLASLAQAQRSDQ
        RFL    +++  AEA A++  V+ + +M FR ++ ESDS+ VIN ++   DD SE   L    + S ++ S C F FV R GN V H +A     +  D 
Subjt:  RFLGL-VQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQD-SLCSFLFVPRSGNVVTHRLASLAQAQRSDQ

Query:  TWIE
         W+E
Subjt:  TWIE

XP_016746002.1 uncharacterized protein LOC107954827 [Gossypium hirsutum]8.4e-0936.94Show/hide
Query:  LVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQD-SLCSFLFVPRSGNVVTHRLASLAQAQRSDQTWIEG
        LV+ + LAEA A++ GV+ + +M FR ++ ESDS+ VIN ++   D+ SE   L    + S ++ S C F FV R GN V H +A     +  D  W+E 
Subjt:  LVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQD-SLCSFLFVPRSGNVVTHRLASLAQAQRSDQTWIEG

Query:  WLSEIVDVIVS
         L +  D+  S
Subjt:  WLSEIVDVIVS

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]9.3e-0837.7Show/hide
Query:  LLTVVRFLGLVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQDSL---CSFLFVPRSGNVVTHRLASLAQ
        LL+ + F+  V ++ LAE  A  EGV L+ +       IE+DS +V N L    +D SE GVL S   R +  SL     F FV R GN   H LA +  
Subjt:  LLTVVRFLGLVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQDSL---CSFLFVPRSGNVVTHRLASLAQ

Query:  AQRSDQTWIEGWLSEIVDVIVS
           S   W+E WLS++ +VI +
Subjt:  AQRSDQTWIEGWLSEIVDVIVS

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]4.0e-1132.82Show/hide
Query:  VRLDFCTPLLTVVRFLGLVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQDSL-CSFLFVPRSGNVVTHR
        +R D    + +  ++L  +Q++D+AEA   +EG++L+ ++    +++E+DS R+ N  S  S+DLSE G ++   +     SL  SF FV R GN   H 
Subjt:  VRLDFCTPLLTVVRFLGLVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQDSL-CSFLFVPRSGNVVTHR

Query:  LASLAQAQRSDQTWIEGWLSEIVDVIVSKCL
        LA  A   R    W+E W  E+   +  +CL
Subjt:  LASLAQAQRSDQTWIEGWLSEIVDVIVSKCL

TrEMBL top hitse value%identityAlignment
A0A1U8P454 uncharacterized protein LOC1079548274.1e-0936.94Show/hide
Query:  LVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQD-SLCSFLFVPRSGNVVTHRLASLAQAQRSDQTWIEG
        LV+ + LAEA A++ GV+ + +M FR ++ ESDS+ VIN ++   D+ SE   L    + S ++ S C F FV R GN V H +A     +  D  W+E 
Subjt:  LVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQD-SLCSFLFVPRSGNVVTHRLASLAQAQRSDQTWIEG

Query:  WLSEIVDVIVS
         L +  D+  S
Subjt:  WLSEIVDVIVS

A0A5C7IQ65 RNase H domain-containing protein1.9e-0632.77Show/hide
Query:  PNQSVRLDFCTPLLTVVRFLGLVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSL-QDSLCSFLFVPRSGNV
        P  SV+++    L   ++  G      +AEA AI+EG+R +   +F  + +ESD+  V+  +++ S   SE GV+++     L + S  SF FVPR GN 
Subjt:  PNQSVRLDFCTPLLTVVRFLGLVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSL-QDSLCSFLFVPRSGNV

Query:  VTHRLASLAQAQRSDQTWI
        V H LA L      +  W+
Subjt:  VTHRLASLAQAQRSDQTWI

A0A6J1C467 uncharacterized protein LOC1110077754.5e-0837.7Show/hide
Query:  LLTVVRFLGLVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQDSL---CSFLFVPRSGNVVTHRLASLAQ
        LL+ + F+  V ++ LAE  A  EGV L+ +       IE+DS +V N L    +D SE GVL S   R +  SL     F FV R GN   H LA +  
Subjt:  LLTVVRFLGLVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQDSL---CSFLFVPRSGNVVTHRLASLAQ

Query:  AQRSDQTWIEGWLSEIVDVIVS
           S   W+E WLS++ +VI +
Subjt:  AQRSDQTWIEGWLSEIVDVIVS

A0A6J1CIF1 uncharacterized protein LOC1110112372.0e-1132.82Show/hide
Query:  VRLDFCTPLLTVVRFLGLVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQDSL-CSFLFVPRSGNVVTHR
        +R D    + +  ++L  +Q++D+AEA   +EG++L+ ++    +++E+DS R+ N  S  S+DLSE G ++   +     SL  SF FV R GN   H 
Subjt:  VRLDFCTPLLTVVRFLGLVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQDSL-CSFLFVPRSGNVVTHR

Query:  LASLAQAQRSDQTWIEGWLSEIVDVIVSKCL
        LA  A   R    W+E W  E+   +  +CL
Subjt:  LASLAQAQRSDQTWIEGWLSEIVDVIVSKCL

A0A7J8S0H9 RNase H domain-containing protein2.5e-0641.18Show/hide
Query:  LVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQD-SLCSFLFVPRSGNVVTHRLA
        LV  + LAEA A++ GV+ + +M FR ++ ESDS+ VIN ++   DD SE   L    + S ++ S C F FV R G+ V H +A
Subjt:  LVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQD-SLCSFLFVPRSGNVVTHRLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G38920.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.1e-0428.42Show/hide
Query:  VRFLGLVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSD------DLSEFGVLISHFQRSLQDSLCSFLFVPRSGNVVTHRLA
        V+ L + Q+  + EA A+   V    ++++R ++ ESDSQ++++ L  + D       L +  +L+ HF+ +       F+F+ R GN V  R+A
Subjt:  VRFLGLVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSD------DLSEFGVLISHFQRSLQDSLCSFLFVPRSGNVVTHRLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGAATTTTTTATAGAAACCGGACCGAACCAGTCAGTTCGACTTGATTTTTGCACACCCCTACTGACGGTCGTGCGTTTCTTGGGGTTGGTCCAGAATATTGACTT
GGCTGAGGCTCATGCCATTATAGAAGGTGTTCGTCTTTCTCATCAGATGAGTTTTCGACTAATTGTGATCGAATCAGACTCCCAACGTGTGATTAATCCTCTCTCCCATT
CGTCGGATGACTTGTCTGAGTTTGGCGTTCTTATCTCTCACTTTCAACGGAGTTTGCAAGATTCTCTTTGCTCTTTCTTGTTCGTGCCTCGGTCAGGTAATGTGGTGACT
CATCGATTAGCTTCGTTAGCTCAGGCTCAACGGTCTGATCAAACTTGGATTGAGGGTTGGCTTTCTGAAATTGTGGATGTTATTGTTTCTAAATGTTTAGTTCCCATTTT
AGTTTCTATTTCCCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGACCGAATTTTTTATAGAAACCGGACCGAACCAGTCAGTTCGACTTGATTTTTGCACACCCCTACTGACGGTCGTGCGTTTCTTGGGGTTGGTCCAGAATATTGACTT
GGCTGAGGCTCATGCCATTATAGAAGGTGTTCGTCTTTCTCATCAGATGAGTTTTCGACTAATTGTGATCGAATCAGACTCCCAACGTGTGATTAATCCTCTCTCCCATT
CGTCGGATGACTTGTCTGAGTTTGGCGTTCTTATCTCTCACTTTCAACGGAGTTTGCAAGATTCTCTTTGCTCTTTCTTGTTCGTGCCTCGGTCAGGTAATGTGGTGACT
CATCGATTAGCTTCGTTAGCTCAGGCTCAACGGTCTGATCAAACTTGGATTGAGGGTTGGCTTTCTGAAATTGTGGATGTTATTGTTTCTAAATGTTTAGTTCCCATTTT
AGTTTCTATTTCCCTATAA
Protein sequenceShow/hide protein sequence
MTEFFIETGPNQSVRLDFCTPLLTVVRFLGLVQNIDLAEAHAIIEGVRLSHQMSFRLIVIESDSQRVINPLSHSSDDLSEFGVLISHFQRSLQDSLCSFLFVPRSGNVVT
HRLASLAQAQRSDQTWIEGWLSEIVDVIVSKCLVPILVSISL