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Lag0027604 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027604
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr8:2433383..2434387
RNA-Seq ExpressionLag0027604
SyntenyLag0027604
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEX88668.1 F-box domain, FBD domain, leucine-rich repeat domain, L domain-like protein [Tanacetum cinerariifolium]3.4e-1134.36Show/hide
Query:  LLSSGAVCFSK-VRSFPSLLLDSKENSL---FSSNGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHYEKAGCFTVA-------------ASSFC
        LL  G VCF K + SF         ++L   F  N  WDV ++     P E  +I  +PI K G+ D+L+WHY+  G +TV              + S  
Subjt:  LLSSGAVCFSK-VRSFPSLLLDSKENSL---FSSNGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHYEKAGCFTVA-------------ASSFC

Query:  SSRSTP----------LKRSP-VRWQPPLGNCFKVNVDASFLMDLGEAGVRIIVRDSLNRVLL
        S+ S P          LK  P V+  PP  NC K+N DAS+   L  A V +I RDS   +LL
Subjt:  SSRSTP----------LKRSP-VRWQPPLGNCFKVNVDASFLMDLGEAGVRIIVRDSLNRVLL

KAG7965392.1 hypothetical protein I3843_09G221100 [Carya illinoinensis]3.9e-0730.88Show/hide
Query:  SNGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHYEKAG-----------------------------CFTVAASSFCSSRSTPLKRSPVR----
        SN  W  E V+  F P+EA++I  LPI   G+ D  IW Y K G                             C  V  S+  +   + +++SP+     
Subjt:  SNGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHYEKAG-----------------------------CFTVAASSFCSSRSTPLKRSPVR----

Query:  ---WQPPLGNCFKVNVDASFLMDLGEAGVRIIVRDS
           W PP     KVN DASF M     G+ II RDS
Subjt:  ---WQPPLGNCFKVNVDASFLMDLGEAGVRIIVRDS

OMO72757.1 hypothetical protein CCACVL1_17615 [Corchorus capsularis]3.0e-0733.33Show/hide
Query:  NGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHYEKAGCFTVAASSFCSSRSTPLKRSPV-RWQPPLGNCFKVNVDASFLMDLGEAGVRIIVRDS
        N  W  + + + F  ++   I  LP+    + D LIW+ +    FTVA +   +S    +   P+ RW PP    +K+N DA+F  DLG AG+  ++RD 
Subjt:  NGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHYEKAGCFTVAASSFCSSRSTPLKRSPV-RWQPPLGNCFKVNVDASFLMDLGEAGVRIIVRDS

Query:  LNRVL
          RVL
Subjt:  LNRVL

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]5.1e-0738.82Show/hide
Query:  KVRSFPSLLLDSKENSLFS-SNGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHYEKAGCFTVAASSFCSSRSTPLKRSP
        K+ S P L L S+ +SL     G W  + VR  F PDEA+ IL +PIG+    D+LIW+YEK G ++V +    +  + P  ++P
Subjt:  KVRSFPSLLLDSKENSLFS-SNGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHYEKAGCFTVAASSFCSSRSTPLKRSP

XP_030941539.1 uncharacterized protein LOC115966444 [Quercus lobata]7.6e-1129.87Show/hide
Query:  MSLWVGVLLSS---GAVCFSKVRSFPSLLLDSKENSLFSSNGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHY----------EKAGCFTVAAS
        MS+W    L S     V  + V SF    +    N L  +   WD+  V     PDEA L+L +P+ +    D++IW +          +    F  +  
Subjt:  MSLWVGVLLSS---GAVCFSKVRSFPSLLLDSKENSLFSSNGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHY----------EKAGCFTVAAS

Query:  SFCSSRSTPLKRSPVRWQPPLGNCFKVNVDASFLMDLGEAGVRIIVRDSLNRVL
        S C   ++P +    +W PP  NCFK+N D +  ++LG+AG+ + VRDS   V+
Subjt:  SFCSSRSTPLKRSPVRWQPPLGNCFKVNVDASFLMDLGEAGVRIIVRDSLNRVL

TrEMBL top hitse value%identityAlignment
A0A1R3HQR7 Ribonuclease H1.4e-0733.33Show/hide
Query:  NGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHYEKAGCFTVAASSFCSSRSTPLKRSPV-RWQPPLGNCFKVNVDASFLMDLGEAGVRIIVRDS
        N  W  + + + F  ++   I  LP+    + D LIW+ +    FTVA +   +S    +   P+ RW PP    +K+N DA+F  DLG AG+  ++RD 
Subjt:  NGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHYEKAGCFTVAASSFCSSRSTPLKRSPV-RWQPPLGNCFKVNVDASFLMDLGEAGVRIIVRDS

Query:  LNRVL
          RVL
Subjt:  LNRVL

A0A1R3J6U3 Ribonuclease H5.5e-0727.39Show/hide
Query:  LFSSNGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIW------HYEKAG-------CFTV-----------------AASSFCSSRS---------
        LF  +G WD + +R  F  D+ R I+ +P+   GS D+ IW      HY  +        CF +                   S+ C + +         
Subjt:  LFSSNGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIW------HYEKAG-------CFTV-----------------AASSFCSSRS---------

Query:  ------TPLKRSPVRWQPPLGNCFKVNVDASFLMDLGEAGVRIIVRDSLNRVLLTTR
              T   R    W+PP+    K+NVDASF++   EAG+ ++ RD+  RVLL  +
Subjt:  ------TPLKRSPVRWQPPLGNCFKVNVDASFLMDLGEAGVRIIVRDSLNRVLLTTR

A0A6J1DAR4 uncharacterized protein LOC1110189542.5e-0738.82Show/hide
Query:  KVRSFPSLLLDSKENSLFS-SNGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHYEKAGCFTVAASSFCSSRSTPLKRSP
        K+ S P L L S+ +SL     G W  + VR  F PDEA+ IL +PIG+    D+LIW+YEK G ++V +    +  + P  ++P
Subjt:  KVRSFPSLLLDSKENSLFS-SNGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHYEKAGCFTVAASSFCSSRSTPLKRSP

A0A7N2MJM2 Uncharacterized protein1.9e-0727.69Show/hide
Query:  NGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHYEKAGCFTV---------------------------AASSFCSSRSTPLKRSPVRWQPPLGN
        +G+W++  +  HF P +A+LI  LP+     PD LIW  EK+G ++V                            +   CS+    L+    RW PP  +
Subjt:  NGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHYEKAGCFTV---------------------------AASSFCSSRSTPLKRSPVRWQPPLGN

Query:  CFKVNVDASFLMDLGEAGVRIIVRDSLNRV
         +KVN D +   +  EAG+ +++R+S   V
Subjt:  CFKVNVDASFLMDLGEAGVRIIVRDSLNRV

A0A803Q6R6 Uncharacterized protein1.4e-0729.25Show/hide
Query:  WVGVLLSSGAVCFSKVRSFPSLLLDSKENSLFSSNGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHYEKAGCFTVAASSFCSSRSTPLKRSP--
        W+        V FS   S P        +S  +    W+V  +  +F P ++  IL +P+      D+LIWHY   G +TV  S F  + S   K S   
Subjt:  WVGVLLSSGAVCFSKVRSFPSLLLDSKENSLFSSNGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHYEKAGCFTVAASSFCSSRSTPLKRSP--

Query:  -------VRWQPPLGNCFKVNVDASFLMDLGEAGVRIIVRDSLNRVL
                +WQPP  N FK+NVDA+   +  + G+  ++RD    V+
Subjt:  -------VRWQPPLGNCFKVNVDASFLMDLGEAGVRIIVRDSLNRVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACTTTGGGTGGGTGTTCTTCTTTCATCTGGCGCAGTTTGCTTCAGCAAGGTTCGGTCTTTTCCTTCATTACTGTTGGATAGCAAGGAGAATTCTCTATTTTCCTC
TAATGGTTATTGGGATGTGGAGCGGGTTCGTTCACATTTTGATCCAGATGAGGCTAGATTGATTTTGTTGTTACCTATCGGCAAAAATGGTTCCCCTGACCAACTAATCT
GGCATTACGAGAAGGCAGGTTGTTTCACTGTTGCTGCGTCGTCTTTCTGTTCCAGTCGATCCACACCGCTCAAGCGTTCTCCAGTTCGCTGGCAGCCCCCTCTGGGCAAT
TGTTTCAAGGTTAATGTAGATGCTAGTTTCCTCATGGATCTTGGTGAGGCTGGTGTCAGAATTATCGTTCGTGATTCCTTAAATCGGGTTCTACTGACGACTAGGGGTGA
TCACGGTTCGGTTTGGTCTGGGTTTGGCCAAAACCAAAGACCGAACCGAACATCTCGGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACTTTGGGTGGGTGTTCTTCTTTCATCTGGCGCAGTTTGCTTCAGCAAGGTTCGGTCTTTTCCTTCATTACTGTTGGATAGCAAGGAGAATTCTCTATTTTCCTC
TAATGGTTATTGGGATGTGGAGCGGGTTCGTTCACATTTTGATCCAGATGAGGCTAGATTGATTTTGTTGTTACCTATCGGCAAAAATGGTTCCCCTGACCAACTAATCT
GGCATTACGAGAAGGCAGGTTGTTTCACTGTTGCTGCGTCGTCTTTCTGTTCCAGTCGATCCACACCGCTCAAGCGTTCTCCAGTTCGCTGGCAGCCCCCTCTGGGCAAT
TGTTTCAAGGTTAATGTAGATGCTAGTTTCCTCATGGATCTTGGTGAGGCTGGTGTCAGAATTATCGTTCGTGATTCCTTAAATCGGGTTCTACTGACGACTAGGGGTGA
TCACGGTTCGGTTTGGTCTGGGTTTGGCCAAAACCAAAGACCGAACCGAACATCTCGGTTCTGA
Protein sequenceShow/hide protein sequence
MSLWVGVLLSSGAVCFSKVRSFPSLLLDSKENSLFSSNGYWDVERVRSHFDPDEARLILLLPIGKNGSPDQLIWHYEKAGCFTVAASSFCSSRSTPLKRSPVRWQPPLGN
CFKVNVDASFLMDLGEAGVRIIVRDSLNRVLLTTRGDHGSVWSGFGQNQRPNRTSRF