; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0027608 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027608
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr8:2472701..2473546
RNA-Seq ExpressionLag0027608
SyntenyLag0027608
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0701905.1 hypothetical protein [Gossypium aridum]2.7e-1622.96Show/hide
Query:  ETTDHALFRCPRVREIWGFLQPSILMDQWDWLEIKDCWLN--FSAYADNILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYWEANPTGGP
        E+ +H    CP  + +W  L  ++L+ +   +E  + WL   F   +++     C   WAIW DRN  +HN+   + ++   ++  Y+    E +  G  
Subjt:  ETTDHALFRCPRVREIWGFLQPSILMDQWDWLEIKDCWLN--FSAYADNILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYWEANPTGGP

Query:  MVQSEDHVKQILLEGEEVI-LHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVLSDCLDLIKSINDQ
         V+S     +     ++++ ++ DA++ +++ +   GIV R  +  ++ +          P  AE++     ++  + +K R++ +  D L +IK     
Subjt:  MVQSEDHVKQILLEGEEVI-LHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVLSDCLDLIKSINDQ

Query:  LQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMAREGYLSPPCLW-VGAFPKWMEMMSLRERR
        +  +S + T + DI   Q+SF+   F+ V    N  AH +A+        L+ V   P++ E  S R+RR
Subjt:  LQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMAREGYLSPPCLW-VGAFPKWMEMMSLRERR

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.6e-2127.14Show/hide
Query:  MCHDEVETTDHALFRCPRVREIWGFLQPSI-LMDQWDWLEIKDCWLNFSAYAD-NILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYWEA
        +C D  E+  HA F C R R+IW  L P +  +   D +   + W + +   +   L+   +  W IWNDRN ++H + +   + +CEW+  +L  + +A
Subjt:  MCHDEVETTDHALFRCPRVREIWGFLQPSI-LMDQWDWLEIKDCWLNFSAYAD-NILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYWEA

Query:  NPTG-GPMVQSEDH-VKQILLEGEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVLSDCLDL
          +   P  QS    V Q       V L  +            G ++R    +L+AA    +     PL AE   +L GL+ A       L V SD L  
Subjt:  NPTG-GPMVQSEDH-VKQILLEGEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVLSDCLDL

Query:  IKSINDQLQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMAREGYLSPPC--LWVGAFPKWM
        I+ I +++  +      + +I A    F F++F   S   N  AH +A+ G  SP     W+  FP W+
Subjt:  IKSINDQLQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMAREGYLSPPC--LWVGAFPKWM

XP_027169594.1 uncharacterized protein LOC113769335 [Coffea eugenioides]1.2e-1625.26Show/hide
Query:  MCHDEVETTDHALFRCPRVREIWGFLQ------PSILMDQWDWLEIKDCWLNFSAYADNILSCICVGAWAIWNDRNGMLHNRPIPTPQD-----RCEWIQ
        +C DE+ET +H +F CPR + +W            +  + W W E+         Y    +S      W IW  RN ++  + +    +     + EW +
Subjt:  MCHDEVETTDHALFRCPRVREIWGFLQ------PSILMDQWDWLEIKDCWLNFSAYADNILSCICVGAWAIWNDRNGMLHNRPIPTPQD-----RCEWIQ

Query:  -DYLTDYWEANPTGGPMVQSEDHVKQILLEGEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLT
         D +    E N      +  E+  K  L+EG  + ++TDA+      + G GIV R   G ++ A+          L  E++ + L LQ+AR    R++ 
Subjt:  -DYLTDYWEANPTGGPMVQSEDHVKQILLEGEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLT

Query:  VLSDCLDLIKSINDQLQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMAR-EGYLSPPCLWVGAFPKWMEMMSLRERR
        + SDC      IN       +IAT L DI+     F++    +V   +N  +H +A     L     WV  FP W++  +  + R
Subjt:  VLSDCLDLIKSINDQLQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMAR-EGYLSPPCLWVGAFPKWMEMMSLRERR

XP_040953658.1 uncharacterized protein LOC121219476 [Gossypium hirsutum]2.2e-1826.15Show/hide
Query:  CHDEVETTDHALFRCPRVREIWGFLQPSILMDQ-----WDWLEIKDCWLNFSAYADNILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYW
        C  + E + H   +C    E+W  L  S L+ Q     W WL     W+ F+   D  L   C   W IW  RN +++ R   +  +    I DY+T+  
Subjt:  CHDEVETTDHALFRCPRVREIWGFLQPSILMDQ-----WDWLEIKDCWLNFSAYADNILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYW

Query:  EANPTGGPMVQSEDHVKQILLEGEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVLSDCLDL
             G   + S +  +Q+   G   I+H D +F  +  +   G++   ++G L+A +  + S    P  AE+   L  ++L   L V R+ V+ D   +
Subjt:  EANPTGGPMVQSEDHVKQILLEGEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVLSDCLDL

Query:  IKSINDQLQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMAREGYLSPPCLWV
        IK    +   +S I   + DI     SF+ + F F+    N++AH +A+E      CL++
Subjt:  IKSINDQLQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMAREGYLSPPCLWV

XP_040957923.1 uncharacterized protein LOC121222088 [Gossypium hirsutum]2.8e-1826.8Show/hide
Query:  CHDEVETTDHALFRCPRVREIWGFLQPSILMDQ-----WDWLEIKDCWLNFSAYADNILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYW
        C  + E + H   +CP   E+W  L  S L+ Q     W WL     W+ F+   D  L   C   W IW  RN +++ R   +  +    I DY+T+  
Subjt:  CHDEVETTDHALFRCPRVREIWGFLQPSILMDQ-----WDWLEIKDCWLNFSAYADNILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYW

Query:  EANPTGGPMVQSEDHVKQILLEGEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVLSDCLDL
             G   + S +  +Q+   G   I+H DA+F  +  +   G++   ++G L+A Q  + S    P   E+   L  ++L   L V R+ ++ D   +
Subjt:  EANPTGGPMVQSEDHVKQILLEGEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVLSDCLDL

Query:  IKSINDQLQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMARE
        IK    +   +S I   + DI     SF+ + F F+    N++AH +A+E
Subjt:  IKSINDQLQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMARE

TrEMBL top hitse value%identityAlignment
A0A6J1CTE3 uncharacterized protein LOC1110145782.4e-1531.18Show/hide
Query:  MCHDEVETTDHALFRCPRVREIWGFLQPSILMDQWDW-LEIKDCWLNF-SAYADNILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYW--
        +C  ++ETTDHALF+C R +E+W  L P     Q D+   ++D  L    + +      + VG WAIWNDRN +   R IP  + R +WI  Y+ D+   
Subjt:  MCHDEVETTDHALFRCPRVREIWGFLQPSILMDQWDW-LEIKDCWLNF-SAYADNILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYW--

Query:  EANPTGGPMVQSEDHVKQILLE-------GEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLG
        +    G   +Q +       +E          + ++ DA+      + GIGIV R + G ++AA  H       PL AES+ +  G
Subjt:  EANPTGGPMVQSEDHVKQILLE-------GEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLG

A0A6J1DX30 uncharacterized protein LOC1110248747.8e-2227.14Show/hide
Query:  MCHDEVETTDHALFRCPRVREIWGFLQPSI-LMDQWDWLEIKDCWLNFSAYAD-NILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYWEA
        +C D  E+  HA F C R R+IW  L P +  +   D +   + W + +   +   L+   +  W IWNDRN ++H + +   + +CEW+  +L  + +A
Subjt:  MCHDEVETTDHALFRCPRVREIWGFLQPSI-LMDQWDWLEIKDCWLNFSAYAD-NILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYWEA

Query:  NPTG-GPMVQSEDH-VKQILLEGEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVLSDCLDL
          +   P  QS    V Q       V L  +            G ++R    +L+AA    +     PL AE   +L GL+ A       L V SD L  
Subjt:  NPTG-GPMVQSEDH-VKQILLEGEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVLSDCLDL

Query:  IKSINDQLQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMAREGYLSPPC--LWVGAFPKWM
        I+ I +++  +      + +I A    F F++F   S   N  AH +A+ G  SP     W+  FP W+
Subjt:  IKSINDQLQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMAREGYLSPPC--LWVGAFPKWM

A0A7J8TBS8 RNase H domain-containing protein2.4e-1525.2Show/hide
Query:  CHDEVETTDHALFRCPRVREIWGFLQPS-----ILMDQWDWLEIKDCWLNFSAYADNILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYW
        C  E E ++H   RCP  +E+ G L  S     I +D W WL     W+ F           C G W +W  RN  L+   I T +D  + I+ Y+ +  
Subjt:  CHDEVETTDHALFRCPRVREIWGFLQPS-----ILMDQWDWLEIKDCWLNFSAYADNILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYW

Query:  EANPTGGPMVQSEDHVKQILLEGEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVLSDCLDL
                +V +    ++  L+ E   +  DA+F  +  +  IG+V++ +DG ++AA+         P  AE+        L   L    + +L D   +
Subjt:  EANPTGGPMVQSEDHVKQILLEGEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVLSDCLDL

Query:  IKSINDQLQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMARE
              + + +S I   + DI   +  F+ + F F+    N+ AH +ARE
Subjt:  IKSINDQLQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMARE

A0A7J9FKW3 Uncharacterized protein1.1e-1526.51Show/hide
Query:  ETTDHALFRCPRVREIWGFLQPSILMDQ-----WDWLEIKDCWLNFSAYADNILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYWEANPT
        E + H    CPR  E+W  L  S +++Q     W WL     W+ F    D  L   C   W IW  RN +++ + + +  +  + I  Y T+    +  
Subjt:  ETTDHALFRCPRVREIWGFLQPSILMDQ-----WDWLEIKDCWLNFSAYADNILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYWEANPT

Query:  GGPMVQSEDHVKQILLEGEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVLSDCLDLIKSIN
            + S  +++Q+   G   I H DA++     +    I+ R ++   +A+Q  + S    P  AE+   L  ++L   L V +LTVL D   +IK   
Subjt:  GGPMVQSEDHVKQILLEGEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVLSDCLDLIKSIN

Query:  DQLQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMAREGYLS
             +S I   + DI + +  F+ + F FV   +N +AH +A+E   S
Subjt:  DQLQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMAREGYLS

A0A803Q8J4 Uncharacterized protein2.2e-1625.47Show/hide
Query:  MCHDEVETTDHALFRCPRVREIWGFLQPSILMDQWDWLEIKDCWLNFSA-YADNILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYWEAN
        +C +  E+  HALF C   R +W     +        + I+D     S  Y  + L  I    W+IW+DRN ++H +    P       Q++L +Y    
Subjt:  MCHDEVETTDHALFRCPRVREIWGFLQPSILMDQWDWLEIKDCWLNFSA-YADNILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYWEAN

Query:  PTGGPMVQSEDHVKQILLEGEE-----VILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVLSDCL
            P   S      I           + L+ DA+F +   K G G ++R  +G + AA  H I+GC  P   E+  +   L+ AR L  +   V +D L
Subjt:  PTGGPMVQSEDHVKQILLEGEE-----VILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVLSDCL

Query:  DLIKSINDQLQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMAREG-YLSPPCLWVGAFP
         L  ++      +SS    ++D+    +    V    V    N  AH +A++   L   C W+  FP
Subjt:  DLIKSINDQLQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMAREG-YLSPPCLWVGAFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein1.5e-1226.55Show/hide
Query:  CHDEVETTDHALFRCPRVREIWGFLQPSILMDQW---DWLEIKDCWLNF---SAYADNILSCICVGAWAIWNDRNGMLHNR----PIPTPQDRCEWIQDY
        CH E E+ +HALF CP     W     S++ +Q    D+ E     LNF   +  +D          W IW  RN ++ N+    P  T         D+
Subjt:  CHDEVETTDHALFRCPRVREIWGFLQPSILMDQW---DWLEIKDCWLNF---SAYADNILSCICVGAWAIWNDRNGMLHNR----PIPTPQDRCEWIQDY

Query:  LTDYWEANPTGGPMVQ-SEDHVKQILLEGEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVL
        L        T  P  Q +E+ ++        V  + DA F  +  +   G ++R   GT ++     ++    PL AE+  +L  LQ        ++ + 
Subjt:  LTDYWEANPTGGPMVQ-SEDHVKQILLEGEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVL

Query:  SDCLDLIKSINDQLQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMAREG-YLSPPCLWVGAFPKWME
         DC  LI  IN  +   SS+A  L DIS     F  + F F+    N  AH +A+ G   S      G+ P W++
Subjt:  SDCLDLIKSINDQLQGQSSIATTLWDISAAQTSFEFVNFKFVSCHYNMFAHNMAREG-YLSPPCLWVGAFPKWME


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTCATGACGAGGTAGAAACGACGGATCATGCACTCTTTCGGTGTCCTAGAGTGCGGGAGATATGGGGGTTCCTTCAGCCATCAATCTTAATGGATCAATGGGATTG
GCTAGAGATCAAAGATTGTTGGTTGAATTTTTCTGCCTATGCAGATAATATCTTATCTTGCATTTGTGTCGGTGCTTGGGCCATCTGGAACGATAGAAATGGTATGCTCC
ACAACCGTCCAATTCCAACGCCTCAGGATCGATGTGAGTGGATTCAGGACTATTTAACGGACTATTGGGAGGCAAATCCCACAGGCGGACCTATGGTCCAATCAGAGGAT
CATGTGAAACAAATTCTACTAGAAGGGGAGGAAGTCATTCTGCATACTGATGCGTCCTTTCTAGATGAAGCGACAAAATGTGGAATTGGTATTGTGATGCGTACTAAGGA
TGGCACATTGATGGCGGCGCAACATCATTCGATTTCTGGATGTCAATTCCCATTGGGGGCTGAATCAATAGTTGTTCTGTTAGGTCTTCAATTAGCAAGGGGTTTGAAGG
TGCGGCGATTAACAGTTCTATCAGACTGTTTAGATCTGATAAAGTCTATAAACGACCAATTACAAGGGCAGTCAAGTATTGCTACGACATTATGGGATATTAGTGCGGCT
CAGACGTCTTTTGAATTTGTTAATTTTAAGTTTGTTAGTTGTCATTATAATATGTTTGCTCATAATATGGCTAGAGAAGGCTATTTGTCACCTCCATGTTTATGGGTAGG
TGCATTTCCTAAGTGGATGGAAATGATGTCGCTCAGGGAGAGACGTTTGTTTGTACCTGTTCGTTCTTATTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTCATGACGAGGTAGAAACGACGGATCATGCACTCTTTCGGTGTCCTAGAGTGCGGGAGATATGGGGGTTCCTTCAGCCATCAATCTTAATGGATCAATGGGATTG
GCTAGAGATCAAAGATTGTTGGTTGAATTTTTCTGCCTATGCAGATAATATCTTATCTTGCATTTGTGTCGGTGCTTGGGCCATCTGGAACGATAGAAATGGTATGCTCC
ACAACCGTCCAATTCCAACGCCTCAGGATCGATGTGAGTGGATTCAGGACTATTTAACGGACTATTGGGAGGCAAATCCCACAGGCGGACCTATGGTCCAATCAGAGGAT
CATGTGAAACAAATTCTACTAGAAGGGGAGGAAGTCATTCTGCATACTGATGCGTCCTTTCTAGATGAAGCGACAAAATGTGGAATTGGTATTGTGATGCGTACTAAGGA
TGGCACATTGATGGCGGCGCAACATCATTCGATTTCTGGATGTCAATTCCCATTGGGGGCTGAATCAATAGTTGTTCTGTTAGGTCTTCAATTAGCAAGGGGTTTGAAGG
TGCGGCGATTAACAGTTCTATCAGACTGTTTAGATCTGATAAAGTCTATAAACGACCAATTACAAGGGCAGTCAAGTATTGCTACGACATTATGGGATATTAGTGCGGCT
CAGACGTCTTTTGAATTTGTTAATTTTAAGTTTGTTAGTTGTCATTATAATATGTTTGCTCATAATATGGCTAGAGAAGGCTATTTGTCACCTCCATGTTTATGGGTAGG
TGCATTTCCTAAGTGGATGGAAATGATGTCGCTCAGGGAGAGACGTTTGTTTGTACCTGTTCGTTCTTATTTGTAA
Protein sequenceShow/hide protein sequence
MCHDEVETTDHALFRCPRVREIWGFLQPSILMDQWDWLEIKDCWLNFSAYADNILSCICVGAWAIWNDRNGMLHNRPIPTPQDRCEWIQDYLTDYWEANPTGGPMVQSED
HVKQILLEGEEVILHTDASFLDEATKCGIGIVMRTKDGTLMAAQHHSISGCQFPLGAESIVVLLGLQLARGLKVRRLTVLSDCLDLIKSINDQLQGQSSIATTLWDISAA
QTSFEFVNFKFVSCHYNMFAHNMAREGYLSPPCLWVGAFPKWMEMMSLRERRLFVPVRSYL