; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0027628 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027628
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr8:2679806..2682543
RNA-Seq ExpressionLag0027628
SyntenyLag0027628
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040427.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.2e-1432.54Show/hide
Query:  EFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQSSNKEFTVGSTLVMTKE---------------------LDNATSIHIA
        +F DE+  + +L ++  SWE  +T++SNS  N IL    V    + EE+ R+S +   +V S  ++T+                      +D+  S+H  
Subjt:  EFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQSSNKEFTVGSTLVMTKE---------------------LDNATSIHIA

Query:  SDRSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDGY
        S R  F S+T G    V MGN   +    I DV LK   G +L+L++V  +P+I MNLIS+ KL D+G+
Subjt:  SDRSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDGY

RVW27439.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]6.3e-1430.77Show/hide
Query:  QLQAYGCEFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQS-----------------------SNKEFTVGSTLVMTKE-
        QL     +F +E+  + LL++   SWE  +T++SNST + I+    V    + EE+ R+S                        N++ +   T     E 
Subjt:  QLQAYGCEFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQS-----------------------SNKEFTVGSTLVMTKE-

Query:  ---LDNATSIHIASDRSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDGY
           +D+  SIH    +  FTS+T G    V MGN  ++K   + DV L+T  G  L L++V  +P+I+MNLIS+ KL D+G+
Subjt:  ---LDNATSIHIASDRSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDGY

RVW31841.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]3.7e-1432.53Show/hide
Query:  QLQAYGCEFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQSSNKEFTVGSTLVMTKE------------LDNATSIHIASD
        QL     +F +E+  + LL ++  SWE ++T++SNS     +    V  + + EEI R+S     +  S +++TK+            +D+  SIH    
Subjt:  QLQAYGCEFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQSSNKEFTVGSTLVMTKE------------LDNATSIHIASD

Query:  RSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDG
        +  FTS+T      V MGN   +K   ++DV L+T  G  L+L++V  +P+I+MNLIS+ KL D+G
Subjt:  RSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDG

RVW91307.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]3.7e-1430.7Show/hide
Query:  QLQAYGCEFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQSS---------------------------------------
        QL A    F DE+ A+ LL+S+  SWE +  T+SNST + ++  S+V    + EE  R+SS                                       
Subjt:  QLQAYGCEFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQSS---------------------------------------

Query:  NKEFTVGSTLVMTK---------------------ELDNATSIHIASDRSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNI
        N E     T V+T                       +D+  S H+ S    FTS+ +G    V MGN   SK   + D+ L+T  G KL+LRDV  VP+I
Subjt:  NKEFTVGSTLVMTK---------------------ELDNATSIHIASDRSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNI

Query:  KMNLISSDKLTDDGY
        ++NLIS+ KL D+GY
Subjt:  KMNLISSDKLTDDGY

TYJ98688.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.2e-1432.54Show/hide
Query:  EFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQSSNKEFTVGSTLVMTKE---------------------LDNATSIHIA
        +F DE+  + +L ++  SWE  +T++SNS  N IL    V    + EE+ R+S +   +V S  ++T+                      +D+  S+H  
Subjt:  EFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQSSNKEFTVGSTLVMTKE---------------------LDNATSIHIA

Query:  SDRSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDGY
        S R  F S+T G    V MGN   +    I DV LK   G +L+L++V  +P+I MNLIS+ KL D+G+
Subjt:  SDRSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDGY

TrEMBL top hitse value%identityAlignment
A0A438CW59 Retrovirus-related Pol polyprotein from transposon TNT 1-943.1e-1430.77Show/hide
Query:  QLQAYGCEFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQS-----------------------SNKEFTVGSTLVMTKE-
        QL     +F +E+  + LL++   SWE  +T++SNST + I+    V    + EE+ R+S                        N++ +   T     E 
Subjt:  QLQAYGCEFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQS-----------------------SNKEFTVGSTLVMTKE-

Query:  ---LDNATSIHIASDRSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDGY
           +D+  SIH    +  FTS+T G    V MGN  ++K   + DV L+T  G  L L++V  +P+I+MNLIS+ KL D+G+
Subjt:  ---LDNATSIHIASDRSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDGY

A0A438D8R7 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-1432.53Show/hide
Query:  QLQAYGCEFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQSSNKEFTVGSTLVMTKE------------LDNATSIHIASD
        QL     +F +E+  + LL ++  SWE ++T++SNS     +    V  + + EEI R+S     +  S +++TK+            +D+  SIH    
Subjt:  QLQAYGCEFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQSSNKEFTVGSTLVMTKE------------LDNATSIHIASD

Query:  RSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDG
        +  FTS+T      V MGN   +K   ++DV L+T  G  L+L++V  +P+I+MNLIS+ KL D+G
Subjt:  RSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDG

A0A438I3N7 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-1430.7Show/hide
Query:  QLQAYGCEFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQSS---------------------------------------
        QL A    F DE+ A+ LL+S+  SWE +  T+SNST + ++  S+V    + EE  R+SS                                       
Subjt:  QLQAYGCEFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQSS---------------------------------------

Query:  NKEFTVGSTLVMTK---------------------ELDNATSIHIASDRSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNI
        N E     T V+T                       +D+  S H+ S    FTS+ +G    V MGN   SK   + D+ L+T  G KL+LRDV  VP+I
Subjt:  NKEFTVGSTLVMTK---------------------ELDNATSIHIASDRSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNI

Query:  KMNLISSDKLTDDGY
        ++NLIS+ KL D+GY
Subjt:  KMNLISSDKLTDDGY

A0A5A7TFU1 Retrovirus-related Pol polyprotein from transposon TNT 1-944.0e-1432.54Show/hide
Query:  EFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQSSNKEFTVGSTLVMTKE---------------------LDNATSIHIA
        +F DE+  + +L ++  SWE  +T++SNS  N IL    V    + EE+ R+S +   +V S  ++T+                      +D+  S+H  
Subjt:  EFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQSSNKEFTVGSTLVMTKE---------------------LDNATSIHIA

Query:  SDRSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDGY
        S R  F S+T G    V MGN   +    I DV LK   G +L+L++V  +P+I MNLIS+ KL D+G+
Subjt:  SDRSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDGY

A0A5D3BKF7 Retrovirus-related Pol polyprotein from transposon TNT 1-944.0e-1432.54Show/hide
Query:  EFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQSSNKEFTVGSTLVMTKE---------------------LDNATSIHIA
        +F DE+  + +L ++  SWE  +T++SNS  N IL    V    + EE+ R+S +   +V S  ++T+                      +D+  S+H  
Subjt:  EFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQSSNKEFTVGSTLVMTKE---------------------LDNATSIHIA

Query:  SDRSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDGY
        S R  F S+T G    V MGN   +    I DV LK   G +L+L++V  +P+I MNLIS+ KL D+G+
Subjt:  SDRSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDGY

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-948.3e-0944.3Show/hide
Query:  LDNATSIHIASDRSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDGY
        +D A S H    R LF  +  G    V MGN   SK   I D+ +KT  G  LVL+DV  VP+++MNLIS   L  DGY
Subjt:  LDNATSIHIASDRSLFTSFTRGHHDLVNMGNGRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDGY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGGCAGTTGCAAGCATATGGATGTGAGTTTACTGATGAGATGAATGCTATTCAGTTGTTAACGTCTGTACTTGGTAGTTGGGAAGCGATGAAGACAACAATGTC
TAATTCAACTGGAAATAATATTTTAAAATTTTCAGAAGTTTGCGATTTCGCCATAGTTGAGGAAATTCCTAGGCAGAGTAGTAATAAAGAGTTTACAGTAGGGTCAACTT
TGGTTATGACTAAGGAGTTAGACAATGCAACTTCTATACATATAGCTTCAGATAGGAGTTTGTTCACATCATTCACAAGAGGACATCATGACCTAGTGAACATGGGAAAT
GGTAGAACCTCCAAGACTACTGAGATAAAAGATGTTAGTTTGAAGACAGAATGTGGAGATAAATTAGTACTACGAGATGTTAGCTTCGTGCCTAATATCAAGATGAATCT
CATTTCTAGTGACAAGTTGACGGATGATGGTTACATATGGGAAGACGAGTTCGTTGTTTTGTCTCGAAGTGGAAAATTGTTGGGATGTGTAGAGATAAAAACCTTATATA
TATTTTTATATTTGTATGAGACGAGGGAGTCGTGGGTCGACGAGGGAGATGGCGACGAACGGGAAGACGACAAGCAAGCAGCAGATTTGGGCCAACGAACGGGAAGAACG
GATCTACGCAAGCAAGCAGCAGTCGTGGGTCGACGAGGTAGACGACGACGAACGAAAAGAACAGATCTAGGCGAGCAAGCAGCAGATCTGGGCCGACGTACTCAAAATGT
TGAGAATGAACAAGAAGATGAAGAGACTGAAAAGGAAGGAGACAAAGGGAATGATAAAAAGGGAGGTGAAGACGATGAAAAGGAAGAAAATGTAGAAGGAATGGGTGGCA
AGCTTGAGTATGATGCAGTTAATACTCAGGTTAAAGGAGGGAACCTTTTGAGAATGACCTTAAAAAGCCTGGAGGAGGAGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAGGCAGTTGCAAGCATATGGATGTGAGTTTACTGATGAGATGAATGCTATTCAGTTGTTAACGTCTGTACTTGGTAGTTGGGAAGCGATGAAGACAACAATGTC
TAATTCAACTGGAAATAATATTTTAAAATTTTCAGAAGTTTGCGATTTCGCCATAGTTGAGGAAATTCCTAGGCAGAGTAGTAATAAAGAGTTTACAGTAGGGTCAACTT
TGGTTATGACTAAGGAGTTAGACAATGCAACTTCTATACATATAGCTTCAGATAGGAGTTTGTTCACATCATTCACAAGAGGACATCATGACCTAGTGAACATGGGAAAT
GGTAGAACCTCCAAGACTACTGAGATAAAAGATGTTAGTTTGAAGACAGAATGTGGAGATAAATTAGTACTACGAGATGTTAGCTTCGTGCCTAATATCAAGATGAATCT
CATTTCTAGTGACAAGTTGACGGATGATGGTTACATATGGGAAGACGAGTTCGTTGTTTTGTCTCGAAGTGGAAAATTGTTGGGATGTGTAGAGATAAAAACCTTATATA
TATTTTTATATTTGTATGAGACGAGGGAGTCGTGGGTCGACGAGGGAGATGGCGACGAACGGGAAGACGACAAGCAAGCAGCAGATTTGGGCCAACGAACGGGAAGAACG
GATCTACGCAAGCAAGCAGCAGTCGTGGGTCGACGAGGTAGACGACGACGAACGAAAAGAACAGATCTAGGCGAGCAAGCAGCAGATCTGGGCCGACGTACTCAAAATGT
TGAGAATGAACAAGAAGATGAAGAGACTGAAAAGGAAGGAGACAAAGGGAATGATAAAAAGGGAGGTGAAGACGATGAAAAGGAAGAAAATGTAGAAGGAATGGGTGGCA
AGCTTGAGTATGATGCAGTTAATACTCAGGTTAAAGGAGGGAACCTTTTGAGAATGACCTTAAAAAGCCTGGAGGAGGAGAAATAG
Protein sequenceShow/hide protein sequence
MKRQLQAYGCEFTDEMNAIQLLTSVLGSWEAMKTTMSNSTGNNILKFSEVCDFAIVEEIPRQSSNKEFTVGSTLVMTKELDNATSIHIASDRSLFTSFTRGHHDLVNMGN
GRTSKTTEIKDVSLKTECGDKLVLRDVSFVPNIKMNLISSDKLTDDGYIWEDEFVVLSRSGKLLGCVEIKTLYIFLYLYETRESWVDEGDGDEREDDKQAADLGQRTGRT
DLRKQAAVVGRRGRRRRTKRTDLGEQAADLGRRTQNVENEQEDEETEKEGDKGNDKKGGEDDEKEENVEGMGGKLEYDAVNTQVKGGNLLRMTLKSLEEEK