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Lag0027658 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027658
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionZinc finger, CCHC-type
Genome locationchr8:3072472..3073089
RNA-Seq ExpressionLag0027658
SyntenyLag0027658
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7832320.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Senna tora]5.6e-1636.36Show/hide
Query:  AYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLEKSSLVLNNTMCMLNFIQTIF--------------
        A+IA+PE+V D  W  DSG TNHVT+DA NL    +YT  E L +GNGT L IS  G S V S      L LN+ + + N  + +               
Subjt:  AYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLEKSSLVLNNTMCMLNFIQTIF--------------

Query:  ------LVKDKVSRRVMLHETLK-CGLYQID-----------LSSIQTPVSCLKSSLSVAVRPSSNKCPVSSSCVFQVQKSVSCNVPLNLWHGRLGHASA
              +VK +V+++V+L  T++  GLYQ D           LSS  +P S      +     SS+   V S+ VF V  S   N+  + WH RLGHA++
Subjt:  ------LVKDKVSRRVMLHETLK-CGLYQID-----------LSSIQTPVSCLKSSLSVAVRPSSNKCPVSSSCVFQVQKSVSCNVPLNLWHGRLGHASA

Query:  KVVKSVLKV
         VV +VLK+
Subjt:  KVVKSVLKV

KAF7833293.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Senna tora]5.1e-1734.35Show/hide
Query:  RFEESFNNLHAFGNNSPQGGNSNGSL--AYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLEKS-SLV
        RF+ +F    A   N  Q  N    +  A++A PE + DP W  DSG TNHVT +A NL    DY+ +E L VGNG  L I H G S++ S    S +L 
Subjt:  RFEESFNNLHAFGNNSPQGGNSNGSL--AYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLEKS-SLV

Query:  LNNTM--------------------CMLNFIQTIFLVKDKVSRRVMLHETLK-CGLYQIDLSSIQTPVSCLKSSLSVAVRPSSNKCPVSSSCVFQVQKSV
        LNN +                    C   F  T   VK + +++V+L  T+K  GLY  D   + +   C  S      RPS+N    SS+ V  + K V
Subjt:  LNNTM--------------------CMLNFIQTIFLVKDKVSRRVMLHETLK-CGLYQIDLSSIQTPVSCLKSSLSVAVRPSSNKCPVSSSCVFQVQKSV

Query:  SCNVPLN---LWHGRLGHASAKVVKSVLKV
          +V ++   LWH RLGH  + VV   L++
Subjt:  SCNVPLN---LWHGRLGHASAKVVKSVLKV

PON65458.1 Zinc finger, CCHC-type, partial [Trema orientale]9.3e-1935.59Show/hide
Query:  RFEESFNNLHAFGNNSPQGGNSNGSLAYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLE-KSSLVLN
        RF+ S+      G+++ Q  + N   AYIA+P  V+D  W  DSG TNHVT D   LA K DY  KE L VGNG++L I H GSS   S L     L L 
Subjt:  RFEESFNNLHAFGNNSPQGGNSNGSLAYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLE-KSSLVLN

Query:  NTM--------------------CMLNFIQTIFLVKDKVSRRVMLHETLKCGLYQIDLS------SIQTPVSCLKSSLSVAVRPSSNKCPVSSSCVF--Q
        N +                      + F      VKD+ S+ +++  TLK GLYQ+D++      S    V+C K+S ++   P    C    + V    
Subjt:  NTM--------------------CMLNFIQTIFLVKDKVSRRVMLHETLKCGLYQIDLS------SIQTPVSCLKSSLSVAVRPSSNKCPVSSSCVF--Q

Query:  VQKSVSCNVPLNL---WHGRLGHASAKVVKSVLKVL
        V  S SCNV  NL   WH RLGH  + ++  VLK +
Subjt:  VQKSVSCNVPLNL---WHGRLGHASAKVVKSVLKVL

TXG67243.1 hypothetical protein EZV62_008518 [Acer yangbiense]3.5e-1834.09Show/hide
Query:  GNNSPQGGNSNGSLAYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLEKSSLVL--------------
        G+      N+N    ++A+PE V+D  W ADSG T+HVT DAGNL +K DY   ESL+VGNG +L ISH G  ++ S L K S++L              
Subjt:  GNNSPQGGNSNGSLAYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLEKSSLVL--------------

Query:  ------NNTMCMLNFIQTIFLVKDKVSRRVMLHETLKCGLYQIDLSSIQT-------PVSCLKSSLSVAVRP--SSNKCPVSSSCVFQVQKSVSCNVPLN
              N+    + F      VKDK++   +L   LK GLYQ+++ + ++       P     S+      P  SSN+  + S  V    +  S N   N
Subjt:  ------NNTMCMLNFIQTIFLVKDKVSRRVMLHETLKCGLYQIDLSSIQT-------PVSCLKSSLSVAVRP--SSNKCPVSSSCVFQVQKSVSCNVPLN

Query:  LWHGRLGHASAKVVKSVLKV
        +WH RLGH S +V+     V
Subjt:  LWHGRLGHASAKVVKSVLKV

TXG69253.1 hypothetical protein EZV62_004188 [Acer yangbiense]9.3e-1934.55Show/hide
Query:  GNNSPQGGNSNGSLAYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLEKSSLVL--------------
        G+      N+N    ++A+PE V+D  W ADSG TNHVT DAGNL +K DY   ESL+VGNG +L ISH G  ++ S L K S++L              
Subjt:  GNNSPQGGNSNGSLAYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLEKSSLVL--------------

Query:  ------NNTMCMLNFIQTIFLVKDKVSRRVMLHETLKCGLYQIDLSSIQT-------PVSCLKSSLSVAVRP--SSNKCPVSSSCVFQVQKSVSCNVPLN
              N+    + F      VKDK++   +L   LK GLYQ+++ + ++       P     S+      P  SSN+  + S  V    +  S N   N
Subjt:  ------NNTMCMLNFIQTIFLVKDKVSRRVMLHETLKCGLYQIDLSSIQT-------PVSCLKSSLSVAVRP--SSNKCPVSSSCVFQVQKSVSCNVPLN

Query:  LWHGRLGHASAKVVKSVLKV
        +WH RLGH S +V+     V
Subjt:  LWHGRLGHASAKVVKSVLKV

TrEMBL top hitse value%identityAlignment
A0A2P5CWM3 Zinc finger, CCHC-type (Fragment)4.5e-1935.59Show/hide
Query:  RFEESFNNLHAFGNNSPQGGNSNGSLAYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLE-KSSLVLN
        RF+ S+      G+++ Q  + N   AYIA+P  V+D  W  DSG TNHVT D   LA K DY  KE L VGNG++L I H GSS   S L     L L 
Subjt:  RFEESFNNLHAFGNNSPQGGNSNGSLAYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLE-KSSLVLN

Query:  NTM--------------------CMLNFIQTIFLVKDKVSRRVMLHETLKCGLYQIDLS------SIQTPVSCLKSSLSVAVRPSSNKCPVSSSCVF--Q
        N +                      + F      VKD+ S+ +++  TLK GLYQ+D++      S    V+C K+S ++   P    C    + V    
Subjt:  NTM--------------------CMLNFIQTIFLVKDKVSRRVMLHETLKCGLYQIDLS------SIQTPVSCLKSSLSVAVRPSSNKCPVSSSCVF--Q

Query:  VQKSVSCNVPLNL---WHGRLGHASAKVVKSVLKVL
        V  S SCNV  NL   WH RLGH  + ++  VLK +
Subjt:  VQKSVSCNVPLNL---WHGRLGHASAKVVKSVLKVL

A0A5C7ID32 Uncharacterized protein1.7e-1834.09Show/hide
Query:  GNNSPQGGNSNGSLAYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLEKSSLVL--------------
        G+      N+N    ++A+PE V+D  W ADSG T+HVT DAGNL +K DY   ESL+VGNG +L ISH G  ++ S L K S++L              
Subjt:  GNNSPQGGNSNGSLAYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLEKSSLVL--------------

Query:  ------NNTMCMLNFIQTIFLVKDKVSRRVMLHETLKCGLYQIDLSSIQT-------PVSCLKSSLSVAVRP--SSNKCPVSSSCVFQVQKSVSCNVPLN
              N+    + F      VKDK++   +L   LK GLYQ+++ + ++       P     S+      P  SSN+  + S  V    +  S N   N
Subjt:  ------NNTMCMLNFIQTIFLVKDKVSRRVMLHETLKCGLYQIDLSSIQT-------PVSCLKSSLSVAVRP--SSNKCPVSSSCVFQVQKSVSCNVPLN

Query:  LWHGRLGHASAKVVKSVLKV
        +WH RLGH S +V+     V
Subjt:  LWHGRLGHASAKVVKSVLKV

A0A5C7IJ06 Uncharacterized protein4.5e-1934.55Show/hide
Query:  GNNSPQGGNSNGSLAYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLEKSSLVL--------------
        G+      N+N    ++A+PE V+D  W ADSG TNHVT DAGNL +K DY   ESL+VGNG +L ISH G  ++ S L K S++L              
Subjt:  GNNSPQGGNSNGSLAYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLEKSSLVL--------------

Query:  ------NNTMCMLNFIQTIFLVKDKVSRRVMLHETLKCGLYQIDLSSIQT-------PVSCLKSSLSVAVRP--SSNKCPVSSSCVFQVQKSVSCNVPLN
              N+    + F      VKDK++   +L   LK GLYQ+++ + ++       P     S+      P  SSN+  + S  V    +  S N   N
Subjt:  ------NNTMCMLNFIQTIFLVKDKVSRRVMLHETLKCGLYQIDLSSIQT-------PVSCLKSSLSVAVRP--SSNKCPVSSSCVFQVQKSVSCNVPLN

Query:  LWHGRLGHASAKVVKSVLKV
        +WH RLGH S +V+     V
Subjt:  LWHGRLGHASAKVVKSVLKV

A0A803PEH4 Uncharacterized protein3.1e-2033.33Show/hide
Query:  RFEESF-----NNLHAFGNNSPQGGNSNGSLAYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVS-------
        RF+ES+     NN H   N +  G  +N   A++A+PE++    W ADSG +NH+T+D  NL  K DY  KES++VGNG+KL+I+H G+  ++       
Subjt:  RFEESF-----NNLHAFGNNSPQGGNSNGSLAYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVS-------

Query:  -------------SCLEKSSLVLNNTMCMLNFIQTIFLVKDKVSRRVMLHETLKCGLYQID----LSSIQTPVSCLKSSLSVAVRPSSNKCPVSSSCVFQ
                     + +  S L  +N + ++ F     LVKDKV+++V+LH  LK  LYQ+D     SS     S   S+ +++V  + N+    S  + Q
Subjt:  -------------SCLEKSSLVLNNTMCMLNFIQTIFLVKDKVSRRVMLHETLKCGLYQID----LSSIQTPVSCLKSSLSVAVRPSSNKCPVSSSCVFQ

Query:  VQKSVSCNVPLNLWHGRLGHASAKVVKSVLK
                  +++ H RLGH S KV+  VL+
Subjt:  VQKSVSCNVPLNLWHGRLGHASAKVVKSVLK

A0A803PPY9 Uncharacterized protein1.9e-1736.27Show/hide
Query:  GNSNGSLAYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSS------CLEK--------------SSLVLN
        GN N   A+IA PE+V+   W ADSG +NH+T DA  +    +Y  KE++ VGNG +L ISH GS  + +      CL++              S L  +
Subjt:  GNSNGSLAYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSS------CLEK--------------SSLVLN

Query:  NTMCMLNFIQTIFLVKDKVSRRVMLHETLKCGLYQIDL-SSIQTPVSCLKSSLSVAVRPSSNKCPVSSSCVFQVQKSVSCNVPLNLWHGRLGHASAKVVK
        N + ++ F     L+KDK + + +L   LK GLYQI   SS  TP S L      +    S     SS  V Q     S N  +++WH RLGH S+KV+ 
Subjt:  NTMCMLNFIQTIFLVKDKVSRRVMLHETLKCGLYQIDL-SSIQTPVSCLKSSLSVAVRPSSNKCPVSSSCVFQVQKSVSCNVPLNLWHGRLGHASAKVVK

Query:  SVLK
         VL+
Subjt:  SVLK

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE19.0e-0927.75Show/hide
Query:  IASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLEKSSLVLNNTMCMLNFIQTIFLVKDKVSRRVMLHETL
        + SP   N+  W+ DSG T+H+T+D  NL++   YT  + ++V +G+ + ISHTGS+++S+  +   L L+N + + N  + +  V    +   +  E  
Subjt:  IASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLEKSSLVLNNTMCMLNFIQTIFLVKDKVSRRVMLHETL

Query:  KCGLYQIDLSSIQTPVSCLKSSLSVAVRPSSNKCPVSSSCVFQVQKSVSCNVPLNLWHGRLGHASAKVVKSVL
               DL+   T V  L+       +    + P++SS    +  S S     + WH RLGH +  ++ SV+
Subjt:  KCGLYQIDLSSIQTPVSCLKSSLSVAVRPSSNKCPVSSSCVFQVQKSVSCNVPLNLWHGRLGHASAKVVKSVL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE27.7e-0826.51Show/hide
Query:  NDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLEKSSLVLNNTMCMLNFIQTIFLVKDKVSRRVMLHETLKCGLYQI
        N   W+ DSG T+H+T+D  NL+    YT  + +++ +G+ + I+HTGS+++ +     SL LN  + + N  + +  V    +   +  E         
Subjt:  NDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLEKSSLVLNNTMCMLNFIQTIFLVKDKVSRRVMLHETLKCGLYQI

Query:  DLSSIQTPVSCLKSSLSVAVRPSSNKCPVSSSCVFQVQKSVSCNVPLNLWHGRLGHASAKVVKSVL
        DL+   T V  L+       +    + P++SS    +  S       + WH RLGH S  ++ SV+
Subjt:  DLSSIQTPVSCLKSSLSVAVRPSSNKCPVSSSCVFQVQKSVSCNVPLNLWHGRLGHASAKVVKSVL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTTTTGAGGAGAGCTTCAACAATCTGCACGCTTTTGGGAATAACAGTCCACAGGGTGGTAATTCCAATGGTTCCTTAGCCTATATTGCCTCACCAGAAATAGTAAA
TGATCCTAAATGGGTGGCAGACAGTGGGGATACTAACCATGTCACGACTGATGCAGGTAACTTGGCCGTGAAGATGGATTATACCGATAAGGAGTCACTTATAGTTGGTA
ATGGTACTAAACTCAAGATATCTCATACTGGCTCTAGTGCAGTTTCCTCTTGCTTAGAAAAATCATCTCTTGTTCTCAATAATACAATGTGTATGTTGAATTTCATTCAA
ACTATTTTTCTTGTGAAGGACAAGGTTTCAAGGAGGGTGATGTTGCACGAAACTCTTAAGTGTGGCCTCTATCAGATTGATCTCTCTTCAATTCAAACACCAGTGTCTTG
TCTCAAATCTTCCCTGTCTGTTGCGGTTAGACCTTCTTCAAATAAATGTCCCGTGTCTTCCTCATGTGTTTTTCAAGTCCAAAAGTCAGTGTCCTGTAATGTGCCTCTAA
ATCTTTGGCACGGTCGGTTGGGTCATGCCTCTGCCAAAGTAGTTAAAAGTGTCTTAAAAGTCTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGTTTTGAGGAGAGCTTCAACAATCTGCACGCTTTTGGGAATAACAGTCCACAGGGTGGTAATTCCAATGGTTCCTTAGCCTATATTGCCTCACCAGAAATAGTAAA
TGATCCTAAATGGGTGGCAGACAGTGGGGATACTAACCATGTCACGACTGATGCAGGTAACTTGGCCGTGAAGATGGATTATACCGATAAGGAGTCACTTATAGTTGGTA
ATGGTACTAAACTCAAGATATCTCATACTGGCTCTAGTGCAGTTTCCTCTTGCTTAGAAAAATCATCTCTTGTTCTCAATAATACAATGTGTATGTTGAATTTCATTCAA
ACTATTTTTCTTGTGAAGGACAAGGTTTCAAGGAGGGTGATGTTGCACGAAACTCTTAAGTGTGGCCTCTATCAGATTGATCTCTCTTCAATTCAAACACCAGTGTCTTG
TCTCAAATCTTCCCTGTCTGTTGCGGTTAGACCTTCTTCAAATAAATGTCCCGTGTCTTCCTCATGTGTTTTTCAAGTCCAAAAGTCAGTGTCCTGTAATGTGCCTCTAA
ATCTTTGGCACGGTCGGTTGGGTCATGCCTCTGCCAAAGTAGTTAAAAGTGTCTTAAAAGTCTTGTAA
Protein sequenceShow/hide protein sequence
MRFEESFNNLHAFGNNSPQGGNSNGSLAYIASPEIVNDPKWVADSGDTNHVTTDAGNLAVKMDYTDKESLIVGNGTKLKISHTGSSAVSSCLEKSSLVLNNTMCMLNFIQ
TIFLVKDKVSRRVMLHETLKCGLYQIDLSSIQTPVSCLKSSLSVAVRPSSNKCPVSSSCVFQVQKSVSCNVPLNLWHGRLGHASAKVVKSVLKVL