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Lag0027669 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027669
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPol protein
Genome locationchr8:3257930..3265450
RNA-Seq ExpressionLag0027669
SyntenyLag0027669
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046127.1 pol protein [Cucumis melo var. makuwa]4.2e-1142Show/hide
Query:  KLPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKA---NLPPQTQAFDSALFLLREYLRHDVRGFSVSDSVQLVATRVLRAT
        K+  + SY E+PV +LAR+ +TLRN+EI LVKVLW+N +V+EATWER  DM++   + PP   +  S+ +++R    H      VS SV+  +T   + T
Subjt:  KLPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKA---NLPPQTQAFDSALFLLREYLRHDVRGFSVSDSVQLVATRVLRAT
KAA0048687.1 pol protein [Cucumis melo var. makuwa]4.7e-1062.5Show/hide
Query:  KLPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKANLP
        K+  + SY E+PV +LAR+ KTLRN+EI LVKVLW+N +V+EATWER DDMK+  P
Subjt:  KLPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKANLP
KAA0058463.1 pol protein [Cucumis melo var. makuwa]3.6e-1059.65Show/hide
Query:  KLPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKANLPP
        ++  + SY E+PV +LAR+ KTLRN+EI LVKVLW+N +V+EATWER DDM++ +PP
Subjt:  KLPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKANLPP
XP_038902325.1 uncharacterized protein LOC120088961 [Benincasa hispida]3.6e-1065.45Show/hide
Query:  LPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKANLP
        L  + SYEE+P+RILAR+ K LRN+EIALVKVLWQN Q +EA WER DDM+ + P
Subjt:  LPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKANLP
XP_038902486.1 uncharacterized protein LOC120089142 [Benincasa hispida]3.6e-1065.45Show/hide
Query:  LPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKANLP
        L  + SYEE+P+RILAR+ K LRN++IALVKVLWQN Q +EATWER DDM+ + P
Subjt:  LPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKANLP
TrEMBL top hitse value%identityAlignment
A0A5A7TW58 Reverse transcriptase2.1e-1142Show/hide
Query:  KLPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKA---NLPPQTQAFDSALFLLREYLRHDVRGFSVSDSVQLVATRVLRAT
        K+  + SY E+PV +LAR+ +TLRN+EI LVKVLW+N +V+EATWER  DM++   + PP   +  S+ +++R    H      VS SV+  +T   + T
Subjt:  KLPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKA---NLPPQTQAFDSALFLLREYLRHDVRGFSVSDSVQLVATRVLRAT
A0A5A7U220 Pol protein3.0e-1074Show/hide
Query:  SYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKANLP
        SYEE+PV ILAR+ K LRNREIALVKVLW+N  V EATWER DDM+A  P
Subjt:  SYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKANLP
A0A5A7U330 Reverse transcriptase2.3e-1062.5Show/hide
Query:  KLPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKANLP
        K+  + SY E+PV +LAR+ KTLRN+EI LVKVLW+N +V+EATWER DDMK+  P
Subjt:  KLPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKANLP
A0A5A7URG5 Pol protein1.7e-1059.65Show/hide
Query:  KLPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKANLPP
        ++  + SY E+PV +LAR+ KTLRN+EI LVKVLW+N +V+EATWER DDM++ +PP
Subjt:  KLPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKANLPP
A0A5A7V003 Reverse transcriptase2.3e-1053.73Show/hide
Query:  KLPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKANLPPQTQAFDSALF
        ++  + SY E+PV +LAR+ KTLRN+EI LVKVLW+N +V+E TWER DDMK+  PP      S +F
Subjt:  KLPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQEATWERGDDMKANLPPQTQAFDSALF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGATGATCCAGCAGTTTTCTATCTTCCAGAACTTAGTCTAGTTGGTGATGAGCTTGAGGCAAGGGTATACTGCACCATAAAGTGGGTCATCCCATGCTTAAGAGC
TTATGACTCAGAGCTTGGTTTTGCAGAGTGCTCAGATTATGCTGCTGAGCGACTGGAGGGAGCAAATTCTATGCTGCAGCAAAACTGGGAACAGAAACTGCCACATCACA
GCTCTTATGAGGAGAAACCAGTTCGAATCCTCGCCAGAGATCGCAAGACTCTTCGTAATAGAGAGATAGCACTAGTCAAAGTGCTTTGGCAGAACGATCAAGTTCAGGAA
GCAACATGGGAGAGAGGAGATGATATGAAAGCGAACCTACCCCCCCAGACGCAAGCCTTCGACTCCGCACTTTTCCTCCTTCGAGAATACCTTCGGCACGACGTGCGTGG
GTTCAGCGTTAGTGACTCCGTTCAGTTGGTGGCGACGCGGGTCCTTCGTGCAACGAAGGGGTTGGTTCGCGTGGCGCGTTTTGCTTCGTTTTCGGCGGTTCTTGCAGTGG
GTCTTCGAGTTTCAGTGTCGTGGAGCATTATTGGTGGTGGGTGGTACTTGAGAGCGTTGGCGATCGTCGAGAGTCGTGGCTTGGCTGGCTATGGGACTGCAGCTGCAAAC
TATTCGGGTCGTTACAGTTGGTATCAGAGCGGAACCTCTCCCAGTAGGATGTGGTTCGGGGACGAACCAAGGCGGAAGCTGGTGGGCATGTCGCAGGGGAATGTCGGGGC
CTTAAGTGCTAAATCCAGATTTCGAATCCTGGGCTTGAGGCGTTACAAAACAAAAAAGAAAATACTGCTAAGCGACGTGAGGGAGCAAAATCTGTGCTGCAGCAAAGTTG
GGAGCAAAAGCTGCCACGTCACAGCTCGAGGAGCCGTCAAAGATAAATTCATTCACGATTTGGAGACCGAATTGGCGGCGGAATGGAGATCTAAGAAGACCATTTGCGAT
TCCACTCAAGGAGACGAAGTTCTTCCATGTTCTTGGTGGTTTGGAGCAGCCGTTTCATCCCCATTTGCTGAAAAGGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATGATGATCCAGCAGTTTTCTATCTTCCAGAACTTAGTCTAGTTGGTGATGAGCTTGAGGCAAGGGTATACTGCACCATAAAGTGGGTCATCCCATGCTTAAGAGC
TTATGACTCAGAGCTTGGTTTTGCAGAGTGCTCAGATTATGCTGCTGAGCGACTGGAGGGAGCAAATTCTATGCTGCAGCAAAACTGGGAACAGAAACTGCCACATCACA
GCTCTTATGAGGAGAAACCAGTTCGAATCCTCGCCAGAGATCGCAAGACTCTTCGTAATAGAGAGATAGCACTAGTCAAAGTGCTTTGGCAGAACGATCAAGTTCAGGAA
GCAACATGGGAGAGAGGAGATGATATGAAAGCGAACCTACCCCCCCAGACGCAAGCCTTCGACTCCGCACTTTTCCTCCTTCGAGAATACCTTCGGCACGACGTGCGTGG
GTTCAGCGTTAGTGACTCCGTTCAGTTGGTGGCGACGCGGGTCCTTCGTGCAACGAAGGGGTTGGTTCGCGTGGCGCGTTTTGCTTCGTTTTCGGCGGTTCTTGCAGTGG
GTCTTCGAGTTTCAGTGTCGTGGAGCATTATTGGTGGTGGGTGGTACTTGAGAGCGTTGGCGATCGTCGAGAGTCGTGGCTTGGCTGGCTATGGGACTGCAGCTGCAAAC
TATTCGGGTCGTTACAGTTGGTATCAGAGCGGAACCTCTCCCAGTAGGATGTGGTTCGGGGACGAACCAAGGCGGAAGCTGGTGGGCATGTCGCAGGGGAATGTCGGGGC
CTTAAGTGCTAAATCCAGATTTCGAATCCTGGGCTTGAGGCGTTACAAAACAAAAAAGAAAATACTGCTAAGCGACGTGAGGGAGCAAAATCTGTGCTGCAGCAAAGTTG
GGAGCAAAAGCTGCCACGTCACAGCTCGAGGAGCCGTCAAAGATAAATTCATTCACGATTTGGAGACCGAATTGGCGGCGGAATGGAGATCTAAGAAGACCATTTGCGAT
TCCACTCAAGGAGACGAAGTTCTTCCATGTTCTTGGTGGTTTGGAGCAGCCGTTTCATCCCCATTTGCTGAAAAGGATTAG
Protein sequenceShow/hide protein sequence
MNDDPAVFYLPELSLVGDELEARVYCTIKWVIPCLRAYDSELGFAECSDYAAERLEGANSMLQQNWEQKLPHHSSYEEKPVRILARDRKTLRNREIALVKVLWQNDQVQE
ATWERGDDMKANLPPQTQAFDSALFLLREYLRHDVRGFSVSDSVQLVATRVLRATKGLVRVARFASFSAVLAVGLRVSVSWSIIGGGWYLRALAIVESRGLAGYGTAAAN
YSGRYSWYQSGTSPSRMWFGDEPRRKLVGMSQGNVGALSAKSRFRILGLRRYKTKKKILLSDVREQNLCCSKVGSKSCHVTARGAVKDKFIHDLETELAAEWRSKKTICD
STQGDEVLPCSWWFGAAVSSPFAEKD