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Lag0027673 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027673
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionphosphoglucan phosphatase LSF1, chloroplastic isoform X1
Genome locationchr8:3352389..3352742
RNA-Seq ExpressionLag0027673
SyntenyLag0027673
Gene Ontology termsGO:0005983 - starch catabolic process (biological process)
GO:0006470 - protein dephosphorylation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0043036 - starch grain (cellular component)
GO:0008138 - protein tyrosine/serine/threonine phosphatase activity (molecular function)
InterPro domainsIPR030066 - Putative phosphatase LSF1, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053669.1 phosphoglucan phosphatase LSF1 [Cucumis melo var. makuwa]2.8e-3678.18Show/hide
Query:  MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG
        MAVLQ P +  ID SSSPLLR SKSSLFWGRDLCFGNG IRD P  +A FN   RV K+FAMSD     +SSSSFKMNLNEYMVTLEKPLGIRFAISVDG
Subjt:  MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG

Query:  RIFVHSLKKG
        RIFVHSLKKG
Subjt:  RIFVHSLKKG

XP_004141092.1 phosphoglucan phosphatase LSF1, chloroplastic isoform X1 [Cucumis sativus]1.3e-3678.18Show/hide
Query:  MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG
        MAVLQ P +R ID SSSPLLRGSKSS FWGRDLCFGNG +RD P  +A FN   R+ KVFAMSD     +SSSSFKMNLNEYMVTLEKPLGIRFAISVDG
Subjt:  MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG

Query:  RIFVHSLKKG
        RIFVHSLKKG
Subjt:  RIFVHSLKKG

XP_008443521.1 PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic isoform X1 [Cucumis melo]2.8e-3678.18Show/hide
Query:  MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG
        MAVLQ P +  ID SSSPLLR SKSSLFWGRDLCFGNG IRD P  +A FN   RV K+FAMSD     +SSSSFKMNLNEYMVTLEKPLGIRFAISVDG
Subjt:  MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG

Query:  RIFVHSLKKG
        RIFVHSLKKG
Subjt:  RIFVHSLKKG

XP_038903050.1 phosphoglucan phosphatase LSF1, chloroplastic isoform X1 [Benincasa hispida]6.7e-3881.82Show/hide
Query:  MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG
        MAVLQ P +R ID SSSPLLRGSKSSLFWGRDLCFGNG IRD   +KA FN   RV KVFAMSD     SSSSSFKMNLNEYMVTLEKPLGIRFAISVDG
Subjt:  MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG

Query:  RIFVHSLKKG
        RIFVHSLKKG
Subjt:  RIFVHSLKKG

XP_038903051.1 phosphoglucan phosphatase LSF1, chloroplastic isoform X2 [Benincasa hispida]6.7e-3881.82Show/hide
Query:  MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG
        MAVLQ P +R ID SSSPLLRGSKSSLFWGRDLCFGNG IRD   +KA FN   RV KVFAMSD     SSSSSFKMNLNEYMVTLEKPLGIRFAISVDG
Subjt:  MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG

Query:  RIFVHSLKKG
        RIFVHSLKKG
Subjt:  RIFVHSLKKG

TrEMBL top hitse value%identityAlignment
A0A0A0LCC8 Uncharacterized protein6.1e-3778.18Show/hide
Query:  MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG
        MAVLQ P +R ID SSSPLLRGSKSS FWGRDLCFGNG +RD P  +A FN   R+ KVFAMSD     +SSSSFKMNLNEYMVTLEKPLGIRFAISVDG
Subjt:  MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG

Query:  RIFVHSLKKG
        RIFVHSLKKG
Subjt:  RIFVHSLKKG

A0A1S3B8A8 phosphoglucan phosphatase LSF1, chloroplastic isoform X11.4e-3678.18Show/hide
Query:  MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG
        MAVLQ P +  ID SSSPLLR SKSSLFWGRDLCFGNG IRD P  +A FN   RV K+FAMSD     +SSSSFKMNLNEYMVTLEKPLGIRFAISVDG
Subjt:  MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG

Query:  RIFVHSLKKG
        RIFVHSLKKG
Subjt:  RIFVHSLKKG

A0A5D3BP45 Phosphoglucan phosphatase LSF11.4e-3678.18Show/hide
Query:  MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG
        MAVLQ P +  ID SSSPLLR SKSSLFWGRDLCFGNG IRD P  +A FN   RV K+FAMSD     +SSSSFKMNLNEYMVTLEKPLGIRFAISVDG
Subjt:  MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG

Query:  RIFVHSLKKG
        RIFVHSLKKG
Subjt:  RIFVHSLKKG

A0A6J1E2C1 phosphoglucan phosphatase LSF1, chloroplastic isoform X16.3e-3477.27Show/hide
Query:  MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG
        MAVLQ P  R IDSSSSPLLRGS SSLFWGR+       I   P +KARFN   RV KVFAM+D SSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG
Subjt:  MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG

Query:  RIFVHSLKKG
        RIFVH+LKKG
Subjt:  RIFVHSLKKG

A0A6J1JNK1 phosphoglucan phosphatase LSF1, chloroplastic isoform X11.2e-3273.45Show/hide
Query:  MAVL---QFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAIS
        MAVL   Q P +R IDSSSSPLLRG KSSLFWGR L FG G IRD P +KA FN R   F+VFAMSD      SSSS+KMNLNEY+VTL+KPLGIRFAIS
Subjt:  MAVL---QFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAIS

Query:  VDGRIFVHSLKKG
        VDGRIFVHSLKKG
Subjt:  VDGRIFVHSLKKG

SwissProt top hitse value%identityAlignment
F4J117 Phosphoglucan phosphatase LSF1, chloroplastic2.8e-1552.53Show/hide
Query:  LRGSKSSLFWGRDLCFGNGDIRDAPTL-------KARFNARPR-VFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKG
        L  S  S+  G     GNG + D   +       K  FN R R V +V AM      SSSS+ FKMNLNEYMVTLEKPLGIRFA+S DG+IFVH++KKG
Subjt:  LRGSKSSLFWGRDLCFGNGDIRDAPTL-------KARFNARPR-VFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKG

Arabidopsis top hitse value%identityAlignment
AT3G01510.1 like SEX4 12.0e-1652.53Show/hide
Query:  LRGSKSSLFWGRDLCFGNGDIRDAPTL-------KARFNARPR-VFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKG
        L  S  S+  G     GNG + D   +       K  FN R R V +V AM      SSSS+ FKMNLNEYMVTLEKPLGIRFA+S DG+IFVH++KKG
Subjt:  LRGSKSSLFWGRDLCFGNGDIRDAPTL-------KARFNARPR-VFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTCTGCAGTTTCCATATATCAGGGCTATTGATTCTTCGTCTTCGCCATTGTTGAGAGGAAGTAAATCGTCGTTGTTCTGGGGAAGAGATTTGTGTTTCGGAAA
TGGAGATATTAGAGATGCTCCGACACTGAAAGCTCGATTCAATGCTCGACCTCGAGTTTTTAAGGTTTTCGCCATGTCGGATGCCTCCTCCTCCTCCTCTTCTTCTTCTT
CCTTTAAGATGAATCTCAATGAGTACATGGTTACTCTTGAGAAGCCGCTCGGCATTCGGTTCGCGATTTCCGTCGATGGTAGAATCTTCGTTCACTCGCTTAAGAAAGGG
GTATTTTCATCTCTTTCTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGTTCTGCAGTTTCCATATATCAGGGCTATTGATTCTTCGTCTTCGCCATTGTTGAGAGGAAGTAAATCGTCGTTGTTCTGGGGAAGAGATTTGTGTTTCGGAAA
TGGAGATATTAGAGATGCTCCGACACTGAAAGCTCGATTCAATGCTCGACCTCGAGTTTTTAAGGTTTTCGCCATGTCGGATGCCTCCTCCTCCTCCTCTTCTTCTTCTT
CCTTTAAGATGAATCTCAATGAGTACATGGTTACTCTTGAGAAGCCGCTCGGCATTCGGTTCGCGATTTCCGTCGATGGTAGAATCTTCGTTCACTCGCTTAAGAAAGGG
GTATTTTCATCTCTTTCTTTTTAA
Protein sequenceShow/hide protein sequence
MAVLQFPYIRAIDSSSSPLLRGSKSSLFWGRDLCFGNGDIRDAPTLKARFNARPRVFKVFAMSDASSSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKG
VFSSLSF