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Lag0027689 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027689
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr8:3541211..3541795
RNA-Seq ExpressionLag0027689
SyntenyLag0027689
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034095.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-4357.69Show/hide
Query:  MASKKAASKTSSDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFG-YSTSSSEQAKEISDPDVMSLMMADIGTGEERMAELE
        M S+   SK  SD    P TR RS+EIQ  E+     +A  IW Q++ P +GG++I+ENP    Y++ S    +E+  P++MS+M+ D+ T E+RMAELE
Subjt:  MASKKAASKTSSDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFG-YSTSSSEQAKEISDPDVMSLMMADIGTGEERMAELE

Query:  RKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQPQHSTSIASLSVQQLQDMIMSSIRAQYGGP
        +KVNMLMKAVEERD EIA LKNHIESRD AESS T   KN +KGKA++QE+QPQ+STSIASLSVQQLQ+MI +SI+ QYGGP
Subjt:  RKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQPQHSTSIASLSVQQLQDMIMSSIRAQYGGP

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]6.0e-4458.24Show/hide
Query:  MASKKAASKTSSDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFGYSTSSSEQA-KEISDPDVMSLMMADIGTGEERMAELE
        M S+   SK  SD    P TR RS+EIQ  E+     +A  IW Q++ P +GG++I+ENP      S SE++ +E+  P++MS+M+ D+ T E+RMAELE
Subjt:  MASKKAASKTSSDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFGYSTSSSEQA-KEISDPDVMSLMMADIGTGEERMAELE

Query:  RKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQPQHSTSIASLSVQQLQDMIMSSIRAQYGGP
        +KVNMLMKAVEERD EIA LKNHIESRD AESS T   KN +KGKA++QE+QPQ+STSIASLSVQQLQ+MI +SI+ QYGGP
Subjt:  RKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQPQHSTSIASLSVQQLQDMIMSSIRAQYGGP

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.9e-4457.87Show/hide
Query:  MASKKAASKTS--SDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFGYSTSSSEQAKEISDPDVMSLMMADIGTGEERMAEL
        MASKKAAS +S  S++Y GPITR RSK I + E++Q S +A  I  Q+ +  + G++I+ENPL+  S SSS ++K+ + PDVMS+MMADI T E  MAE+
Subjt:  MASKKAASKTS--SDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFGYSTSSSEQAKEISDPDVMSLMMADIGTGEERMAEL

Query:  ERKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQP-QHSTSIASLSVQQLQDMIMSSIRAQYGGPMMWTFPTASARVK
        ERK+N LMKAVEERD EI +L+  + +R+ AESSQTP  K  DKGK V+QENQP Q S S+ASLSVQQLQDMI +SIRAQYGGP   TF  + +  K
Subjt:  ERKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQP-QHSTSIASLSVQQLQDMIMSSIRAQYGGPMMWTFPTASARVK

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]2.3e-4360Show/hide
Query:  MASKKAASKTS--SDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFG-YSTSSSEQAKEISDPDVMSLMMADIGTGEERMAE
        MASKKAASK+S  SD+Y GPITR RSK I +  ++Q S IA  I  Q+ +  + G++I+ENPL+  Y ++SS   KE + PDVMS+MMAD+   E  MAE
Subjt:  MASKKAASKTS--SDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFG-YSTSSSEQAKEISDPDVMSLMMADIGTGEERMAE

Query:  LERKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQP-QHSTSIASLSVQQLQDMIMSSIRAQYGGPMMWTF
        +ERK+N+LMK V+ERD EIA+LK  +++R+ AESSQTP  K +DKGK V+QENQP Q STS+ASLSVQQLQDMI SSIRAQYGGP   +F
Subjt:  LERKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQP-QHSTSIASLSVQQLQDMIMSSIRAQYGGPMMWTF

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]2.3e-4360Show/hide
Query:  MASKKAASKTS--SDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFG-YSTSSSEQAKEISDPDVMSLMMADIGTGEERMAE
        MASKKAASK+S  SD+Y GPITR RSK I +  ++Q S IA  I  Q+ +  + G++I+ENPL+  Y ++SS   KE + PDVMS+MMAD+   E  MAE
Subjt:  MASKKAASKTS--SDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFG-YSTSSSEQAKEISDPDVMSLMMADIGTGEERMAE

Query:  LERKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQP-QHSTSIASLSVQQLQDMIMSSIRAQYGGPMMWTF
        +ERK+N+LMK V+ERD EIA+LK  +++R+ AESSQTP  K +DKGK V+QENQP Q STS+ASLSVQQLQDMI SSIRAQYGGP   +F
Subjt:  LERKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQP-QHSTSIASLSVQQLQDMIMSSIRAQYGGPMMWTF

TrEMBL top hitse value%identityAlignment
A0A5A7SY17 Ty3-gypsy retrotransposon protein8.5e-4457.69Show/hide
Query:  MASKKAASKTSSDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFG-YSTSSSEQAKEISDPDVMSLMMADIGTGEERMAELE
        M S+   SK  SD    P TR RS+EIQ  E+     +A  IW Q++ P +GG++I+ENP    Y++ S    +E+  P++MS+M+ D+ T E+RMAELE
Subjt:  MASKKAASKTSSDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFG-YSTSSSEQAKEISDPDVMSLMMADIGTGEERMAELE

Query:  RKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQPQHSTSIASLSVQQLQDMIMSSIRAQYGGP
        +KVNMLMKAVEERD EIA LKNHIESRD AESS T   KN +KGKA++QE+QPQ+STSIASLSVQQLQ+MI +SI+ QYGGP
Subjt:  RKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQPQHSTSIASLSVQQLQDMIMSSIRAQYGGP

A0A5A7TZU9 Ribonuclease H2.9e-4458.24Show/hide
Query:  MASKKAASKTSSDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFGYSTSSSEQA-KEISDPDVMSLMMADIGTGEERMAELE
        M S+   SK  SD    P TR RS+EIQ  E+     +A  IW Q++ P +GG++I+ENP      S SE++ +E+  P++MS+M+ D+ T E+RMAELE
Subjt:  MASKKAASKTSSDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFGYSTSSSEQA-KEISDPDVMSLMMADIGTGEERMAELE

Query:  RKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQPQHSTSIASLSVQQLQDMIMSSIRAQYGGP
        +KVNMLMKAVEERD EIA LKNHIESRD AESS T   KN +KGKA++QE+QPQ+STSIASLSVQQLQ+MI +SI+ QYGGP
Subjt:  RKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQPQHSTSIASLSVQQLQDMIMSSIRAQYGGP

A0A5A7U5H1 Ty3-gypsy retrotransposon protein1.5e-4357.14Show/hide
Query:  MASKKAASKTSSDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFGYSTSSSEQA-KEISDPDVMSLMMADIGTGEERMAELE
        M S+   SK  SD    P TR RS+EIQ  E+     +   IW Q++ P +GG++I+ENP      S SE++ +E+  P++MS+M+ D+ T E+RMAELE
Subjt:  MASKKAASKTSSDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFGYSTSSSEQA-KEISDPDVMSLMMADIGTGEERMAELE

Query:  RKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQPQHSTSIASLSVQQLQDMIMSSIRAQYGGP
        +KVNMLMKAVEE+D EIA LKNHIESRD AESS T   KN +KGKA++QE+QPQ+STSIASLSVQQLQ+MI +SI+ QYGGP
Subjt:  RKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQPQHSTSIASLSVQQLQDMIMSSIRAQYGGP

A0A5A7U9H0 Ty3-gypsy retrotransposon protein1.5e-4357.69Show/hide
Query:  MASKKAASKTSSDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFGYSTSSSEQA-KEISDPDVMSLMMADIGTGEERMAELE
        M S+   SK  SD    P TR RS++IQ  E+     +AN IW Q++ P +GG++I+ENP      S SE++ +E   P++MS+M+ D+ T E+RMAELE
Subjt:  MASKKAASKTSSDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFGYSTSSSEQA-KEISDPDVMSLMMADIGTGEERMAELE

Query:  RKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQPQHSTSIASLSVQQLQDMIMSSIRAQYGGP
        +KVNMLMKAVEERD EIASLKNHIESRD  ESS T   KN +KGKA++QE+QPQ+STSIASLSVQQL +MI +SI+ QYGGP
Subjt:  RKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQPQHSTSIASLSVQQLQDMIMSSIRAQYGGP

A0A5D3BY54 Ty3-gypsy retrotransposon protein3.8e-4457.87Show/hide
Query:  MASKKAASKTS--SDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFGYSTSSSEQAKEISDPDVMSLMMADIGTGEERMAEL
        MASKKAAS +S  S++Y GPITR RSK I + E++Q S +A  I  Q+ +  + G++I+ENPL+  S SSS ++K+ + PDVMS+MMADI T E  MAE+
Subjt:  MASKKAASKTS--SDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFGYSTSSSEQAKEISDPDVMSLMMADIGTGEERMAEL

Query:  ERKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQP-QHSTSIASLSVQQLQDMIMSSIRAQYGGPMMWTFPTASARVK
        ERK+N LMKAVEERD EI +L+  + +R+ AESSQTP  K  DKGK V+QENQP Q S S+ASLSVQQLQDMI +SIRAQYGGP   TF  + +  K
Subjt:  ERKVNMLMKAVEERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQP-QHSTSIASLSVQQLQDMIMSSIRAQYGGPMMWTFPTASARVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCCAAGAAAGCTGCTTCCAAGACTTCAAGCGACTCATACGTGGGACCAATTACTCGCGAACGCTCCAAAGAAATTCAAAAGTTAGAAGAAGAACAAGCCTCTGT
CATTGCAAATATGATATGGAACCAGATGGCAGATCCAAATCAAGGCGGAATGATCATCCAAGAAAATCCTTTATTTGGCTATTCTACTTCATCTTCTGAGCAAGCAAAGG
AGATATCAGATCCTGACGTGATGTCTTTAATGATGGCTGACATAGGTACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAAGTCAACATGCTGATGAAGGCGGTTGAA
GAGAGAGATTGTGAAATTGCCTCTCTAAAAAATCACATTGAAAGTCGTGATATTGCTGAATCAAGCCAAACACCTGCTGCAAAGAATAATGACAAAGGGAAGGCTGTCAT
ACAAGAAAACCAGCCTCAGCATTCCACTTCAATTGCTTCCCTGTCTGTTCAACAACTCCAAGATATGATTATGAGCTCCATTAGAGCTCAATATGGTGGACCTATGATGT
GGACTTTTCCTACCGCAAGCGCACGGGTCAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCCAAGAAAGCTGCTTCCAAGACTTCAAGCGACTCATACGTGGGACCAATTACTCGCGAACGCTCCAAAGAAATTCAAAAGTTAGAAGAAGAACAAGCCTCTGT
CATTGCAAATATGATATGGAACCAGATGGCAGATCCAAATCAAGGCGGAATGATCATCCAAGAAAATCCTTTATTTGGCTATTCTACTTCATCTTCTGAGCAAGCAAAGG
AGATATCAGATCCTGACGTGATGTCTTTAATGATGGCTGACATAGGTACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAAGTCAACATGCTGATGAAGGCGGTTGAA
GAGAGAGATTGTGAAATTGCCTCTCTAAAAAATCACATTGAAAGTCGTGATATTGCTGAATCAAGCCAAACACCTGCTGCAAAGAATAATGACAAAGGGAAGGCTGTCAT
ACAAGAAAACCAGCCTCAGCATTCCACTTCAATTGCTTCCCTGTCTGTTCAACAACTCCAAGATATGATTATGAGCTCCATTAGAGCTCAATATGGTGGACCTATGATGT
GGACTTTTCCTACCGCAAGCGCACGGGTCAAGTAA
Protein sequenceShow/hide protein sequence
MASKKAASKTSSDSYVGPITRERSKEIQKLEEEQASVIANMIWNQMADPNQGGMIIQENPLFGYSTSSSEQAKEISDPDVMSLMMADIGTGEERMAELERKVNMLMKAVE
ERDCEIASLKNHIESRDIAESSQTPAAKNNDKGKAVIQENQPQHSTSIASLSVQQLQDMIMSSIRAQYGGPMMWTFPTASARVK