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Lag0027729 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027729
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr8:4174501..4174803
RNA-Seq ExpressionLag0027729
SyntenyLag0027729
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7575585.1 hem peroxidase superfamily [Arabidopsis thaliana x Arabidopsis arenosa]4.4e-2266.67Show/hide
Query:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESL
        MSKAYDR+EWS+L  +LE+LGFH   I++IM+C++S S+S L+N    GNV+PSRGLRQGDPLSPYLF+LCTE L
Subjt:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESL
KAG7587012.1 Zinc knuckle CX2CX4HX4C [Arabidopsis thaliana x Arabidopsis arenosa]4.4e-2266.67Show/hide
Query:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESL
        MSKAYDR+EWS+L  +LE+LGFH   I++IM+C++S S+S L+N    GNV+PSRGLRQGDPLSPYLF+LCTE L
Subjt:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESL
XP_013650931.1 uncharacterized protein LOC106355555 [Brassica napus]7.5e-2256.47Show/hide
Query:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLYHAGNYSVKN
        MSKAYDRVEWS+L  +  K+GFHR+ I++IM C+SS ++++LLN +  G+++P RGLRQGDPLSP+LF+LC E+L H  N + +N
Subjt:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLYHAGNYSVKN
XP_013665485.1 uncharacterized protein LOC106369943 [Brassica napus]7.5e-2256.47Show/hide
Query:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLYHAGNYSVKN
        MSKAYDRVEWS+L  +  K+GFHR+ I++IM C+SS ++++LLN +  G+++P RGLRQGDPLSP+LF+LC E+L H  N + +N
Subjt:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLYHAGNYSVKN
XP_030940187.1 uncharacterized protein LOC115965136 [Quercus lobata]4.4e-2265.79Show/hide
Query:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLY
        MSKAYDRVEW +L  ++ KLGFH++ I+ +M CIS+ S+S+L+N EA G +IPSRGLRQGDP+SPYLFLLCTE L+
Subjt:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLY
TrEMBL top hitse value%identityAlignment
A0A2N9F6W2 Reverse transcriptase domain-containing protein6.2e-2264.47Show/hide
Query:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLY
        MSKAYD+VEW YL K+++K+GFH++ I  +++CIS+ S+SIL+N E  GN+ PSRGLRQGDPLSPYLFLLC E L+
Subjt:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLY
A0A2N9F9E4 Reverse transcriptase domain-containing protein1.2e-2267.11Show/hide
Query:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLY
        MSKAYDRVEWSYL  ++EK+GFH++ I  +++CISS S+S+L+N E  GN+ PSRGLRQGDPLSPYLFLLC E L+
Subjt:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLY
A0A2N9FKE9 Protein kinase domain-containing protein1.2e-2265.79Show/hide
Query:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLY
        MSKAYDRVEW YL  ++E++GFH++ IN +++CISS S+S+L+N E  GN+ PSRGLRQGDPLSPYLFLLC E L+
Subjt:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLY
A0A2N9HR00 Uncharacterized protein4.7e-2265.79Show/hide
Query:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLY
        MSKAYDRVEWSYL ++++K+GFH++ I  + +CIS+ S+SIL+N E  GN+ PSRGLRQGDPLSPYLFLLC E L+
Subjt:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLY
A0A2N9J7Z2 Reverse transcriptase domain-containing protein3.6e-2264.47Show/hide
Query:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLY
        MSKAYDRVEW YL ++++K+GFH++ I  + +CIS+ S+SIL+N E  GN++PSRGLRQGDPLSPYLFLLC E L+
Subjt:  MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLY
SwissProt top hitse value%identityAlignment
P11369 LINE-1 retrotransposable element ORF2 protein7.8e-0635.53Show/hide
Query:  KAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLYHA
        KA+D+++  ++ K+LE+ G     +N I    S    +I +N E +  +    G RQG PLSPYLF +  E L  A
Subjt:  KAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLYHA
P92555 Uncharacterized mitochondrial protein AtMg012501.6e-0670.59Show/hide
Query:  LLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESL
        ++N    G V PSRGLRQGDPLSPYLF+LCTE L
Subjt:  LLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESL
Q03274 Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment)2.5e-0433.77Show/hide
Query:  KAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLN-REAIGNVIPSRGLRQGDPLSPYLF------LLCT
        KA+D V  S + + L++LG    + N+I   +S ++ +I +        +   RG++QGDPLSP+LF      LLC+
Subjt:  KAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLN-REAIGNVIPSRGLRQGDPLSPYLF------LLCT
Arabidopsis top hitse value%identityAlignment
ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)1.1e-0770.59Show/hide
Query:  LLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESL
        ++N    G V PSRGLRQGDPLSPYLF+LCTE L
Subjt:  LLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAAAGCTTATGATAGGGTGGAATGGTCATATCTTAGTAAAATGTTGGAGAAATTGGGGTTCCATAGGGAGTCGATTAATTTTATTATGGATTGTATTTCATCTGC
TTCATTTTCAATTCTTCTTAATAGGGAAGCGATTGGAAATGTGATACCTTCCAGGGGCTTGAGGCAAGGGGATCCTCTGTCTCCATATTTATTTTTATTATGCACTGAGA
GTCTCTACCATGCTGGCAACTACTCGGTCAAGAACGCTCTCAGGGGTTGCAATAGCGAGATCTTTGATAGCGAGCATAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTAAAGCTTATGATAGGGTGGAATGGTCATATCTTAGTAAAATGTTGGAGAAATTGGGGTTCCATAGGGAGTCGATTAATTTTATTATGGATTGTATTTCATCTGC
TTCATTTTCAATTCTTCTTAATAGGGAAGCGATTGGAAATGTGATACCTTCCAGGGGCTTGAGGCAAGGGGATCCTCTGTCTCCATATTTATTTTTATTATGCACTGAGA
GTCTCTACCATGCTGGCAACTACTCGGTCAAGAACGCTCTCAGGGGTTGCAATAGCGAGATCTTTGATAGCGAGCATAGCTAG
Protein sequenceShow/hide protein sequence
MSKAYDRVEWSYLSKMLEKLGFHRESINFIMDCISSASFSILLNREAIGNVIPSRGLRQGDPLSPYLFLLCTESLYHAGNYSVKNALRGCNSEIFDSEHS