; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0027730 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027730
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr8:4177810..4179293
RNA-Seq ExpressionLag0027730
SyntenyLag0027730
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]3.2e-1737.69Show/hide
Query:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIPHPVTFK-----------------
        + AK  WR + +PNL +SK+L+ +YF   S+  AS  S SSYFWKGF+ G      G+R    NG +IK F DPW+P P TFK                 
Subjt:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIPHPVTFK-----------------

Query:  -----WGVSKLNQFLCDEDVRVISHLPINS
             W V+ ++   C+ED  +I  +PI+S
Subjt:  -----WGVSKLNQFLCDEDVRVISHLPINS

XP_024178198.1 uncharacterized protein LOC112184155 [Rosa chinensis]1.9e-1723.28Show/hide
Query:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIPHPVTFK------WGVS--KLNQF
        + AKQ WR++  P+  L+++L+ RYFP      A +   +S+ W+  + G      G+R    NG++I ++ DPW+P P  F+       G    K+  F
Subjt:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIPHPVTFK------WGVS--KLNQF

Query:  LCDEDVRVISHLPIN-------------------SSCSEPVLDLIYIGAWAIWNDRNYALHNRLVPSIIDRCVWIYRYLEDFRKINEVRASVSSSRVDLH
        +  E      H  +N                    +     L+   +  W +W +RN  +      +II+   W   +L+D++ +++ R    + R  + 
Subjt:  LCDEDVRVISHLPIN-------------------SSCSEPVLDLIYIGAWAIWNDRNYALHNRLVPSIIDRCVWIYRYLEDFRKINEVRASVSSSRVDLH

Query:  VLVDEGEETFMHTDAAFNEPNKKSEIGVVLRDKQGDLKAVLSSPSQVCISHLGAEVVAVLEGIRSAISMGVESILVMCDSLSLVKALQGTNHCDSGISSV
                  ++ D +F        +GVV+R+ +G   A  +   Q   S +  E  A+  G+  AI    + I V  D ++LV AL       S I  +
Subjt:  VLVDEGEETFMHTDAAFNEPNKKSEIGVVLRDKQGDLKAVLSSPSQVCISHLGAEVVAVLEGIRSAISMGVESILVMCDSLSLVKALQGTNHCDSGISSV

Query:  LWDTK
        L D +
Subjt:  LWDTK

XP_030939737.1 uncharacterized protein LOC115964598 [Quercus lobata]2.0e-1926.13Show/hide
Query:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIPHPVTFKWGVSKLNQFLCDEDVR-
        + AKQ WR+       + ++ + +YFP     +AS+ +  SY W+  +      + G+R N  NG SI ++ D W+P P TFK    +L      EDVR 
Subjt:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIPHPVTFKWGVSKLNQFLCDEDVR-

Query:  -----------------------VISHLPINSSCSEPVLDLIYIGAWAIWNDRNYALHNRLVPSIIDRCVWIYRYLEDFRKINEVRASVSSSRVDLHVLV
                               V   + +  S  E    L+   AW +W +RN   H     S +D   W  +YL++F+++N+V  S     V +    
Subjt:  -----------------------VISHLPINSSCSEPVLDLIYIGAWAIWNDRNYALHNRLVPSIIDRCVWIYRYLEDFRKINEVRASVSSSRVDLHVLV

Query:  DEGEETFMHTDAAFNEPNKKSEIGVVLRDKQGDLKAVLSSPSQVCISHLGAEVVAVLEGIRSAISMGVESILVMCDSLSLVKALQGTNHCDSGISSVLWD
               ++ D       K + +GV++RD  G + A LS      +  L  E  A   G+  A  +GV   ++  DSL +  AL G++   S I+ V+  
Subjt:  DEGEETFMHTDAAFNEPNKKSEIGVVLRDKQGDLKAVLSSPSQVCISHLGAEVVAVLEGIRSAISMGVESILVMCDSLSLVKALQGTNHCDSGISSVLWD

Query:  TKGAFSFCIP
         +G    C P
Subjt:  TKGAFSFCIP

XP_031099874.1 uncharacterized protein LOC116004082 [Ipomoea triloba]1.9e-1727.55Show/hide
Query:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIP-----------------------
        M  KQ WR + NP+  +++I + RYFP  S   ASV    SY W+  +        G+RR   NG+S  I+  PW+P                       
Subjt:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIP-----------------------

Query:  -HPVTFKWGVSKLNQFLCDEDVRVISHLPINSSCSEPVLDLIYIGAWAIWNDRNYALHNRLVPSIIDRCVW--IYRYLEDFRKINEVRASVSS-----SR
          P T  W  + L+      DVR I  +P  ++ +     ++Y     IW  RN A+ +  +P+   R VW       + +R++++     S+     + 
Subjt:  -HPVTFKWGVSKLNQFLCDEDVRVISHLPINSSCSEPVLDLIYIGAWAIWNDRNYALHNRLVPSIIDRCVW--IYRYLEDFRKINEVRASVSS-----SR

Query:  VDLHVLVDEGEETFMHT---DAAFNEPNKKSEIGVVLRDKQGDLKAVLSSPSQVCISHLGAEVVAVLEGIRSAISMGVESILVMCDSLSLVKAL
          L   V +G+   +H    DA F   ++K+ +GVVL   +GD  A  +SP Q C+S L AE VA  E +      G+ S++   D   L + L
Subjt:  VDLHVLVDEGEETFMHT---DAAFNEPNKKSEIGVVLRDKQGDLKAVLSSPSQVCISHLGAEVVAVLEGIRSAISMGVESILVMCDSLSLVKAL

XP_042973059.1 uncharacterized protein LOC122304861 [Carya illinoinensis]3.2e-1723.94Show/hide
Query:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIPHPVTFK-----------------
        + AKQ WRV++NP    + +L+ +YF    + +A++    S+ WK     L   + G+     NG+SIKI+ D W+P  VTFK                 
Subjt:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIPHPVTFK-----------------

Query:  -------WGVSKLNQFLCDEDVRVISHLPINSS----------------------CSEPVLDLIYIGAWAIWNDRN-YALHNRL-----VPSIIDRCVWI
               W    + Q    E+  ++ +LPI+ S                        E  ++LI +    IW  RN +   NR      V S    C+  
Subjt:  -------WGVSKLNQFLCDEDVRVISHLPINSS----------------------CSEPVLDLIYIGAWAIWNDRN-YALHNRL-----VPSIIDRCVWI

Query:  YRYLEDFRKINEVRASVSSSRVDLHVLVDEGEETFMHTDAAFNEPNKKSEIGVVLRDKQGDLKAVLSSPSQVCISHLGAEVVAVLEGIRSAISMGVESIL
        Y+  ++ ++    +++    R  LH    EG+   ++ DAA    ++K  +GVV+RD+ GD+ A L S      + + AEV A+   ++    +    + 
Subjt:  YRYLEDFRKINEVRASVSSSRVDLHVLVDEGEETFMHTDAAFNEPNKKSEIGVVLRDKQGDLKAVLSSPSQVCISHLGAEVVAVLEGIRSAISMGVESIL

Query:  VMCDSLSLVKALQGTNHCDSGISSVLWDTK
        +  D+ S++ A+     C      ++ D K
Subjt:  VMCDSLSLVKALQGTNHCDSGISSVLWDTK

TrEMBL top hitse value%identityAlignment
A0A6J1DX30 uncharacterized protein LOC1110248741.5e-1737.69Show/hide
Query:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIPHPVTFK-----------------
        + AK  WR + +PNL +SK+L+ +YF   S+  AS  S SSYFWKGF+ G      G+R    NG +IK F DPW+P P TFK                 
Subjt:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIPHPVTFK-----------------

Query:  -----WGVSKLNQFLCDEDVRVISHLPINS
             W V+ ++   C+ED  +I  +PI+S
Subjt:  -----WGVSKLNQFLCDEDVRVISHLPINS

A0A803NGQ8 Uncharacterized protein6.5e-1625.48Show/hide
Query:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIP--HPVTFK---------------
        + AKQAWR++ NP+  ++++L+ +YF       AS     SY W   + G      G+     NG++    +  WIP    +T+K               
Subjt:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIP--HPVTFK---------------

Query:  ----WGVSKLNQFLCDEDVRVISHLPINSS-------CSEP------VLDLIYIG---------------AWAIWNDRNYALHNRLVPSIIDRCVWIYRY
            W V KLN +   + V+ I  +PI+ S        S P      + D +  G                W+IWN RN  L     P + D    +  Y
Subjt:  ----WGVSKLNQFLCDEDVRVISHLPINSS-------CSEP------VLDLIYIG---------------AWAIWNDRNYALHNRLVPSIIDRCVWIYRY

Query:  LEDFRKINEVRAS---VSSSRVDLHVLVDEGEETFMHTDAAFNEPNKKSEIGVVLRDKQGDLKAVLSSPSQVCISHLGAEVVAVLEGIR--SAISMGVES
        L+++    +  A+   +  +      L   G  T +++DAA + P      G  ++D  G + A LSSP    +S   AE  A+L+ I+  S + + + S
Subjt:  LEDFRKINEVRAS---VSSSRVDLHVLVDEGEETFMHTDAAFNEPNKKSEIGVVLRDKQGDLKAVLSSPSQVCISHLGAEVVAVLEGIR--SAISMGVES

Query:  ILVMCDSLSLVKAL
        I   C  L LVK +
Subjt:  ILVMCDSLSLVKAL

A0A803P4P2 Uncharacterized protein4.3e-2028.91Show/hide
Query:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIPHPVTFK------WGVSKLNQFLC
        M AKQAWRV+ NPN  L+ IL+ ++F   +   A +  S S+ W   + G      G+     NG SI+  ++ W+P     +      W  S L  F  
Subjt:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIPHPVTFK------WGVSKLNQFLC

Query:  DEDVRVISHLPI--NSSCSEPVLDLIYIGAWAIWNDRNYALHNRLVPSIIDRCVWIYRYLEDFRKINEVRASVSSSRV----DLHVLVDEGEETFMHTDA
        +     I    I   S  S+  L L+    WAIWN RN  L      S +D   WI  YL D+         +SSS +    +    V+ G    ++TDA
Subjt:  DEDVRVISHLPI--NSSCSEPVLDLIYIGAWAIWNDRNYALHNRLVPSIIDRCVWIYRYLEDFRKINEVRASVSSSRV----DLHVLVDEGEETFMHTDA

Query:  AFNEPNKKSEIGVVLRDKQGDLKAVLSSPSQVCISHLGAEVVAVLEGIRSAISMGVESILVMCDSLSLVKALQGTNHCDSGISSVLWDTKGAFS
        A      K   G V+ D +G + A LS P+      L AE +A+ E +     + +   ++  DS  LV  + G     S +S V+ D   + S
Subjt:  AFNEPNKKSEIGVVLRDKQGDLKAVLSSPSQVCISHLGAEVVAVLEGIRSAISMGVESILVMCDSLSLVKALQGTNHCDSGISSVLWDTKGAFS

A0A803P5U5 Uncharacterized protein5.9e-1723.68Show/hide
Query:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIPHPVTF------------------
        + AKQAWR+V NPN  L K+L+ +YFP  S   ASV  S S  W+G   G      G+R   + G+SI+   DPWI    TF                  
Subjt:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIPHPVTF------------------

Query:  ---KWGVSKLNQFLCDEDVRVISHLP----------------------------------INSSCSEPVLDLIYIGAWAIWNDRNYALHNRLVPSIIDRC
           +W +S L Q+    DV  I  +P                                  ++S  ++  ++ ++   WAIW +RN  +H +     +D  
Subjt:  ---KWGVSKLNQFLCDEDVRVISHLP----------------------------------INSSCSEPVLDLIYIGAWAIWNDRNYALHNRLVPSIIDRC

Query:  VWIYRYLEDFRKINEVRAS---VSSSRVDLHVLVDEGEETFMHTDAAFNEPNKK-SEIGVVLRDKQGDLKAVLSSPSQVCISHLGAEVVAVLEGIRSAIS
        ++   +L++++       S   V +S    HV       T  H     ++ +   + +G VLRD  G +KA LS P          E  ++   +  A+ 
Subjt:  VWIYRYLEDFRKINEVRAS---VSSSRVDLHVLVDEGEETFMHTDAAFNEPNKK-SEIGVVLRDKQGDLKAVLSSPSQVCISHLGAEVVAVLEGIRSAIS

Query:  MGVESILVMCDSLSLVKALQGTNHCDSGISSVLWDTKGAFSF
          +    +  ++L +  A++     +S  S ++ D     SF
Subjt:  MGVESILVMCDSLSLVKALQGTNHCDSGISSVLWDTKGAFSF

A0A803PZ52 Uncharacterized protein5.0e-1629.02Show/hide
Query:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIPHPVTFKWGVSKLNQFLCDEDVRV
        M AKQAWRV+ NPN TL+ IL+ +YF     + A +  S S+ W   + G                + KI+K   + H       V  + +FL    +  
Subjt:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIPHPVTFKWGVSKLNQFLCDEDVRV

Query:  ISHLPINSSCSEPVLDLIYIGAWAIWNDRNYALHNRLVPSIIDRCVWIYRYLEDFRKINEVRASVSSSRVDLHVLVDEGEET----FMHTDAAFNEPNKK
         SHL      ++  L L+    WAIWN RN  L   L  S  D   WI  YL D+         +S S++ LHV   + +       ++TDAA      K
Subjt:  ISHLPINSSCSEPVLDLIYIGAWAIWNDRNYALHNRLVPSIIDRCVWIYRYLEDFRKINEVRASVSSSRVDLHVLVDEGEET----FMHTDAAFNEPNKK

Query:  SEIGVVLRDKQGDLKAVLSSPSQVCISHLGAEVVAVLEGIRSAISMGVESILVMCDSLSLVKALQGTNHCDSGISSVLWDTKGAFS
           G V+ D  G + A LS PS   +  L AE +A+   +     + +   ++  DS  LV  + G     S +S V+ D + + S
Subjt:  SEIGVVLRDKQGDLKAVLSSPSQVCISHLGAEVVAVLEGIRSAISMGVESILVMCDSLSLVKALQGTNHCDSGISSVLWDTKGAFS

SwissProt top hitse value%identityAlignment
P93295 Uncharacterized mitochondrial protein AtMg003108.2e-0835.53Show/hide
Query:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWI
        + AKQ++R++  P+  LS++LR RYFP  S+   SV +  SY W+  + G      G+ R   +G   K++ D WI
Subjt:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWI

Arabidopsis top hitse value%identityAlignment
ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.8e-0935.53Show/hide
Query:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWI
        + AKQ++R++  P+  LS++LR RYFP  S+   SV +  SY W+  + G      G+ R   +G   K++ D WI
Subjt:  MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGCTAAACAAGCATGGCGTGTGGTGGTTAATCCAAACTTAACGCTCTCTAAGATTCTAAGGGGGAGGTATTTCCCTACGTTGTCTGTTTTTTATGCATCAGTCAA
ATCTTCCTCCTCTTATTTCTGGAAGGGTTTTGTGTTGGGGCTTGGATTTGCTGAAGGGGGTATTCGACGGAATCGAGCGAATGGTCAGTCGATTAAAATCTTTAAAGATC
CTTGGATTCCTCATCCTGTTACCTTTAAGTGGGGTGTCTCCAAGCTTAACCAATTTCTATGCGATGAGGATGTTCGAGTGATTTCTCACTTACCAATTAACAGTAGTTGC
TCTGAGCCCGTTTTGGATCTAATTTATATTGGTGCCTGGGCAATTTGGAATGATAGAAATTATGCCCTCCATAACCGCCTTGTTCCCAGCATCATTGATAGGTGTGTATG
GATTTATAGGTACCTTGAAGACTTTAGAAAGATTAATGAGGTTAGGGCTTCTGTGTCATCATCTAGGGTCGACTTACATGTATTAGTCGACGAAGGCGAGGAAACCTTTA
TGCATACTGATGCGGCTTTTAATGAACCCAATAAGAAGTCAGAAATTGGGGTAGTGCTTCGTGACAAACAAGGTGATTTAAAGGCAGTTCTGTCTTCACCATCCCAAGTT
TGTATCTCCCATCTAGGTGCTGAAGTTGTTGCTGTACTGGAGGGAATTCGATCCGCTATTAGTATGGGTGTCGAAAGCATTTTAGTGATGTGCGACTCTCTTTCATTGGT
CAAGGCTCTTCAGGGAACGAACCATTGTGATTCGGGTATTTCATCAGTTTTGTGGGATACAAAAGGAGCGTTCTCTTTTTGTATCCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGCTAAACAAGCATGGCGTGTGGTGGTTAATCCAAACTTAACGCTCTCTAAGATTCTAAGGGGGAGGTATTTCCCTACGTTGTCTGTTTTTTATGCATCAGTCAA
ATCTTCCTCCTCTTATTTCTGGAAGGGTTTTGTGTTGGGGCTTGGATTTGCTGAAGGGGGTATTCGACGGAATCGAGCGAATGGTCAGTCGATTAAAATCTTTAAAGATC
CTTGGATTCCTCATCCTGTTACCTTTAAGTGGGGTGTCTCCAAGCTTAACCAATTTCTATGCGATGAGGATGTTCGAGTGATTTCTCACTTACCAATTAACAGTAGTTGC
TCTGAGCCCGTTTTGGATCTAATTTATATTGGTGCCTGGGCAATTTGGAATGATAGAAATTATGCCCTCCATAACCGCCTTGTTCCCAGCATCATTGATAGGTGTGTATG
GATTTATAGGTACCTTGAAGACTTTAGAAAGATTAATGAGGTTAGGGCTTCTGTGTCATCATCTAGGGTCGACTTACATGTATTAGTCGACGAAGGCGAGGAAACCTTTA
TGCATACTGATGCGGCTTTTAATGAACCCAATAAGAAGTCAGAAATTGGGGTAGTGCTTCGTGACAAACAAGGTGATTTAAAGGCAGTTCTGTCTTCACCATCCCAAGTT
TGTATCTCCCATCTAGGTGCTGAAGTTGTTGCTGTACTGGAGGGAATTCGATCCGCTATTAGTATGGGTGTCGAAAGCATTTTAGTGATGTGCGACTCTCTTTCATTGGT
CAAGGCTCTTCAGGGAACGAACCATTGTGATTCGGGTATTTCATCAGTTTTGTGGGATACAAAAGGAGCGTTCTCTTTTTGTATCCCCTAG
Protein sequenceShow/hide protein sequence
MFAKQAWRVVVNPNLTLSKILRGRYFPTLSVFYASVKSSSSYFWKGFVLGLGFAEGGIRRNRANGQSIKIFKDPWIPHPVTFKWGVSKLNQFLCDEDVRVISHLPINSSC
SEPVLDLIYIGAWAIWNDRNYALHNRLVPSIIDRCVWIYRYLEDFRKINEVRASVSSSRVDLHVLVDEGEETFMHTDAAFNEPNKKSEIGVVLRDKQGDLKAVLSSPSQV
CISHLGAEVVAVLEGIRSAISMGVESILVMCDSLSLVKALQGTNHCDSGISSVLWDTKGAFSFCIP