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Lag0027798 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027798
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr8:5233838..5234381
RNA-Seq ExpressionLag0027798
SyntenyLag0027798
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO58663.1 reverse transcriptase [Corchorus capsularis]7.8e-0936.56Show/hide
Query:  WVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSKAFVISDCLMAINFLNKQSEV
        W+ P P  WKIN DA++ SS+ + G+G+  R  +G I   G R      D    E+ AIL G   A++ G ++  + SD L+AI+ +NK+  V
Subjt:  WVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSKAFVISDCLMAINFLNKQSEV
VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]6.0e-0935.24Show/hide
Query:  PTNCWVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSKAFVISDCLMAINFLNKQSEVWSS
        P + W PPP  ++KINVD A +S     G+G+  R  +G      +R     +   + EL A +EGLRFAID+G + A +  D    IN +   +E  + 
Subjt:  PTNCWVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSKAFVISDCLMAINFLNKQSEVWSS

Query:  LDGLV
        +DGL+
Subjt:  LDGLV
XP_018832574.2 uncharacterized protein LOC109000195 [Juglans regia]8.4e-1133.58Show/hide
Query:  LALANSKLDLGPNFLTAQVSH---RPTNC-WVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLG
        LA  N  L L   F+  + S+   R   C W PPPP   K+NVD A  +   ++GIG+  R + G +     +  D   +P  +EL A+L GL+F + LG
Subjt:  LALANSKLDLGPNFLTAQVSH---RPTNC-WVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLG

Query:  CSKAFVISDCLMAINFLNKQSEVWSSLDGLVNSI
             V SDCL+ +  L    E  SS   L+  +
Subjt:  CSKAFVISDCLMAINFLNKQSEVWSSLDGLVNSI
XP_022154440.1 uncharacterized protein LOC111021711 [Momordica charantia]2.7e-0940Show/hide
Query:  RPTNCWVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSKAFVISDCLMAINFLNKQ
        +  N W PP PD  KINVD A + S+  TGIG+ C+ D G I    +R  D+ ++P +VE  AILEGL     L      V SD   +IN ++++
Subjt:  RPTNCWVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSKAFVISDCLMAINFLNKQ
XP_042944784.1 uncharacterized protein LOC122278665 [Carya illinoinensis]2.7e-0938.74Show/hide
Query:  AQVSHRPTNC-WVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSKAFVISDCLMAINFL--
        AQ   +  +C W PPP    K+NVD A  S    +GIG+  R D G +     +  D   DP E+EL AIL G++  I LG  +  + SD L+ I  L  
Subjt:  AQVSHRPTNC-WVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSKAFVISDCLMAINFL--

Query:  -NKQSEVWSSL
          K S +WSSL
Subjt:  -NKQSEVWSSL
TrEMBL top hitse value%identityAlignment
A0A1R3GKQ5 Reverse transcriptase3.8e-0936.56Show/hide
Query:  WVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSKAFVISDCLMAINFLNKQSEV
        W+ P P  WKIN DA++ SS+ + G+G+  R  +G I   G R      D    E+ AIL G   A++ G ++  + SD L+AI+ +NK+  V
Subjt:  WVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSKAFVISDCLMAINFLNKQSEV
A0A251QGB9 RNase H domain-containing protein (Fragment)8.4e-0933.33Show/hide
Query:  PTNCWVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSKAFVISDCLMAINFLNKQSEVWSS
        P   W PPP   +KINVD A +S     G+G+  R  +G   G  +R     +   + EL A +EGLR+AID+G + A +  D    +N +   +E ++ 
Subjt:  PTNCWVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSKAFVISDCLMAINFLNKQSEVWSS

Query:  LDGLV
        +D L+
Subjt:  LDGLV
A0A2I4FLN6 uncharacterized protein LOC1090001954.0e-1133.58Show/hide
Query:  LALANSKLDLGPNFLTAQVSH---RPTNC-WVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLG
        LA  N  L L   F+  + S+   R   C W PPPP   K+NVD A  +   ++GIG+  R + G +     +  D   +P  +EL A+L GL+F + LG
Subjt:  LALANSKLDLGPNFLTAQVSH---RPTNC-WVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLG

Query:  CSKAFVISDCLMAINFLNKQSEVWSSLDGLVNSI
             V SDCL+ +  L    E  SS   L+  +
Subjt:  CSKAFVISDCLMAINFLNKQSEVWSSLDGLVNSI
A0A5E4FZN9 PREDICTED: retrotransposon2.9e-0935.24Show/hide
Query:  PTNCWVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSKAFVISDCLMAINFLNKQSEVWSS
        P + W PPP  ++KINVD A +S     G+G+  R  +G      +R     +   + EL A +EGLRFAID+G + A +  D    IN +   +E  + 
Subjt:  PTNCWVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSKAFVISDCLMAINFLNKQSEVWSS

Query:  LDGLV
        +DGL+
Subjt:  LDGLV
A0A6J1DJL6 uncharacterized protein LOC1110217111.3e-0940Show/hide
Query:  RPTNCWVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSKAFVISDCLMAINFLNKQ
        +  N W PP PD  KINVD A + S+  TGIG+ C+ D G I    +R  D+ ++P +VE  AILEGL     L      V SD   +IN ++++
Subjt:  RPTNCWVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSKAFVISDCLMAINFLNKQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.6e-0525.66Show/hide
Query:  QVSHRPTNCWVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSKAFVISDCLMAINFLNKQS
        QV    +  W  PP    K N DA W+  +   GIG   R + G +  +G R      +  E EL A+   +         +    SD    +N LN   
Subjt:  QVSHRPTNCWVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSKAFVISDCLMAINFLNKQS

Query:  EVWSSLDGLVNSI
        + W +L   +  I
Subjt:  EVWSSLDGLVNSI
AT4G29090.1 Ribonuclease H-like superfamily protein3.0e-0631.67Show/hide
Query:  QVSHRPTNCWVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVE--LRAILEGLRFAIDLGCSK---AFVI--SDCLMAI
        QV+      W PPP    K N DA W   +   GIG   R + G +  +G R        P+++  L A LE +R+A+ L  S+    +VI  SD  + I
Subjt:  QVSHRPTNCWVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVE--LRAILEGLRFAIDLGCSK---AFVI--SDCLMAI

Query:  NFLNKQSEVWSSLDGLVNSI
          LN   E+W SL   +  +
Subjt:  NFLNKQSEVWSSLDGLVNSI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCTTAGTTCGAGTTGTTCCCCTAAAGAGCTAGCATTGGCTAATTCGAAGCTCGACTTGGGTCCTAATTTCCTAACGGCTCAAGTTTCTCACCGTCCAACTAACTG
TTGGGTTCCACCGCCGCCTGATTTATGGAAGATAAATGTGGATGCTGCGTGGAGATCTTCTTCCCTTGAGACTGGAATTGGTATAGCTTGCAGAAGAGATGATGGAAGCA
TAGCTGGGGTTGGTTTACGCTATTTTGACCTAGAATTTGATCCCCCTGAAGTCGAACTGCGAGCTATTTTGGAGGGCTTGAGATTTGCGATTGATTTGGGTTGTAGCAAG
GCGTTTGTTATATCAGATTGTTTAATGGCCATTAATTTCCTAAATAAGCAATCAGAAGTCTGGAGTTCCTTAGATGGGCTGGTGAATAGTATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCCTTAGTTCGAGTTGTTCCCCTAAAGAGCTAGCATTGGCTAATTCGAAGCTCGACTTGGGTCCTAATTTCCTAACGGCTCAAGTTTCTCACCGTCCAACTAACTG
TTGGGTTCCACCGCCGCCTGATTTATGGAAGATAAATGTGGATGCTGCGTGGAGATCTTCTTCCCTTGAGACTGGAATTGGTATAGCTTGCAGAAGAGATGATGGAAGCA
TAGCTGGGGTTGGTTTACGCTATTTTGACCTAGAATTTGATCCCCCTGAAGTCGAACTGCGAGCTATTTTGGAGGGCTTGAGATTTGCGATTGATTTGGGTTGTAGCAAG
GCGTTTGTTATATCAGATTGTTTAATGGCCATTAATTTCCTAAATAAGCAATCAGAAGTCTGGAGTTCCTTAGATGGGCTGGTGAATAGTATTTAA
Protein sequenceShow/hide protein sequence
MLLSSSCSPKELALANSKLDLGPNFLTAQVSHRPTNCWVPPPPDLWKINVDAAWRSSSLETGIGIACRRDDGSIAGVGLRYFDLEFDPPEVELRAILEGLRFAIDLGCSK
AFVISDCLMAINFLNKQSEVWSSLDGLVNSI