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Lag0027830 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027830
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein, putative, unclassified
Genome locationchr8:5658605..5659948
RNA-Seq ExpressionLag0027830
SyntenyLag0027830
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAK39575.1 putative reverse transcriptase [Oryza sativa Japonica Group]1.2e-2229.61Show/hide
Query:  SAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINK-----------------------------------------------------------LCAR-
        S GGKE+LIKA++QAIP + M  FKLP S+ D++ K                                                           LCAR 
Subjt:  SAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINK-----------------------------------------------------------LCAR-

Query:  ---------------------------------------WKVGNERYIQIDQDPWLDSEGSKIPILTTNDLKGKRVQKIIDDQGNWIEEKIWENFTVLDA
                                               W+VGN   I+I +DPWL  + S+ PI    + + K V  +I + G+W   KI + F  LDA
Subjt:  ---------------------------------------WKVGNERYIQIDQDPWLDSEGSKIPILTTNDLKGKRVQKIIDDQGNWIEEKIWENFTVLDA

Query:  ETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANKEWRKFWKLKAIPKAKICVTHDESTKHA-LWECKMGKLELNGILDM
        E ILN     R  +D I W  DK GMF+V+SAY L  Q  N  E+S+S   N NK W   WK K   K KI      S   A +   K  KLE + +  +
Subjt:  ETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANKEWRKFWKLKAIPKAKICVTHDESTKHA-LWECKMGKLELNGILDM

Query:  DDEE
         D E
Subjt:  DDEE

AAQ19327.1 bZIP-like protein [Oryza sativa Japonica Group]1.0e-2129.28Show/hide
Query:  SAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINK-----------------------------------------------------------LCAR-
        S GGKE+LIKA++QAIP + M  FKLP S+ D++ K                                                           LCAR 
Subjt:  SAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINK-----------------------------------------------------------LCAR-

Query:  ---------------------------------------WKVGNERYIQIDQDPWLDSEGSKIPILTTNDLKGKRVQKIIDDQGNWIEEKIWENFTVLDA
                                               W+VGN   I+I +D WL  + S+ PI    + + K V  +I + G+W   KI + F  LDA
Subjt:  ---------------------------------------WKVGNERYIQIDQDPWLDSEGSKIPILTTNDLKGKRVQKIIDDQGNWIEEKIWENFTVLDA

Query:  ETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANKEWRKFWKLKAIPKAKICVTHDESTKHA-LWECKMGKLELNGILDM
        E ILN     R  +D I W  DK GMF+V+SAY L  Q  N  E+S+S   N NK W   WK K   K KI      S   A +   K  KLE + +  +
Subjt:  ETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANKEWRKFWKLKAIPKAKICVTHDESTKHA-LWECKMGKLELNGILDM

Query:  DDEE
         D E
Subjt:  DDEE

EEE69144.1 hypothetical protein OsJ_28268 [Oryza sativa Japonica Group]5.3e-2330.2Show/hide
Query:  SAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINKLCAR--------------------------------------------WKVGNERYIQIDQDPW
        + GGKEILIKA++QA+P + M  FKLP S+C+E+ KL                                               W +GN + +++ +DPW
Subjt:  SAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINKLCAR--------------------------------------------WKVGNERYIQIDQDPW

Query:  LDSEGSKIPILTTNDLKGKRVQKIIDDQGNWIEEKIWENFTVLDAETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANK
        +    S+ PI    + + + V  +ID  G+W  +KI  +F  +DAE ILN     R  +D I W  D+ G F+V+SAY+L    A  ++ S+S+   +++
Subjt:  LDSEGSKIPILTTNDLKGKRVQKIIDDQGNWIEEKIWENFTVLDAETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANK

Query:  EWRKFWKLKAIPKAKI----CVTHDESTKHALWECKMGKLELNGI
             WK  A  K KI     +T+  +T   L   K  KLE++ I
Subjt:  EWRKFWKLKAIPKAKI----CVTHDESTKHALWECKMGKLELNGI

XP_023876230.1 uncharacterized protein LOC111988681 [Quercus suber]1.0e-2137.5Show/hide
Query:  MFSAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINKLCARWKVGNERYIQIDQDPWLDSEGS-KIPILTTNDLKGKRVQKIID-DQGNWIEEKIWENF
        + S+ GKE+LIKA+ QA+P++TMSCFKLP +LCDE+  +     VG+   IQI +D WL +  + ++       L+G +V  +ID +Q  W E  I + F
Subjt:  MFSAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINKLCARWKVGNERYIQIDQDPWLDSEGS-KIPILTTNDLKGKRVQKIID-DQGNWIEEKIWENF

Query:  TVLDAETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQ-QANHSEASTSNETNANKEWRKFWKLKAIPKAK
           DAE IL+        +D +IW+ +K G FTV+S Y L Q   +N     +SN     + WR  W +    K K
Subjt:  TVLDAETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQ-QANHSEASTSNETNANKEWRKFWKLKAIPKAK

XP_025877668.1 uncharacterized protein LOC4351546 [Oryza sativa Japonica Group]1.0e-2129.28Show/hide
Query:  SAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINK-----------------------------------------------------------LCAR-
        S GGKE+LIKA++QAIP + M  FKLP S+ D++ K                                                           LCAR 
Subjt:  SAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINK-----------------------------------------------------------LCAR-

Query:  ---------------------------------------WKVGNERYIQIDQDPWLDSEGSKIPILTTNDLKGKRVQKIIDDQGNWIEEKIWENFTVLDA
                                               W+VGN   I+I +D WL  + S+ PI    + + K V  +I + G+W   KI + F  LDA
Subjt:  ---------------------------------------WKVGNERYIQIDQDPWLDSEGSKIPILTTNDLKGKRVQKIIDDQGNWIEEKIWENFTVLDA

Query:  ETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANKEWRKFWKLKAIPKAKICVTHDESTKHA-LWECKMGKLELNGILDM
        E ILN     R  +D I W  DK GMF+V+SAY L  Q  N  E+S+S   N NK W   WK K   K KI      S   A +   K  KLE + +  +
Subjt:  ETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANKEWRKFWKLKAIPKAKICVTHDESTKHA-LWECKMGKLELNGILDM

Query:  DDEE
         D E
Subjt:  DDEE

TrEMBL top hitse value%identityAlignment
A0A5S6RD43 Putative reverse transcriptase5.7e-2329.61Show/hide
Query:  SAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINK-----------------------------------------------------------LCAR-
        S GGKE+LIKA++QAIP + M  FKLP S+ D++ K                                                           LCAR 
Subjt:  SAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINK-----------------------------------------------------------LCAR-

Query:  ---------------------------------------WKVGNERYIQIDQDPWLDSEGSKIPILTTNDLKGKRVQKIIDDQGNWIEEKIWENFTVLDA
                                               W+VGN   I+I +DPWL  + S+ PI    + + K V  +I + G+W   KI + F  LDA
Subjt:  ---------------------------------------WKVGNERYIQIDQDPWLDSEGSKIPILTTNDLKGKRVQKIIDDQGNWIEEKIWENFTVLDA

Query:  ETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANKEWRKFWKLKAIPKAKICVTHDESTKHA-LWECKMGKLELNGILDM
        E ILN     R  +D I W  DK GMF+V+SAY L  Q  N  E+S+S   N NK W   WK K   K KI      S   A +   K  KLE + +  +
Subjt:  ETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANKEWRKFWKLKAIPKAKICVTHDESTKHA-LWECKMGKLELNGILDM

Query:  DDEE
         D E
Subjt:  DDEE

A0A803Q3X2 Uncharacterized protein4.4e-2334.31Show/hide
Query:  MFSAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINKLCARWKVGNERYIQIDQDPWLDSEGS-KI---PILTTNDLKGKRVQKIIDDQGNWIEEKIWE
        MFS  GKE+LIKA+VQAIPT+TMSCF+L       I+++ ARW+VGN   +++ +DPWL    + KI   P+L  N +    V  +    G W E  I  
Subjt:  MFSAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINKLCARWKVGNERYIQIDQDPWLDSEGS-KI---PILTTNDLKGKRVQKIIDDQGNWIEEKIWE

Query:  NFTVLDAETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANKEWRKFWKLKAIPKAK-----------------------
         F   DA+ IL+ P    + +D+I+W   K G +TVKS Y +     +  E   SN+       +  W+ K  PK K                       
Subjt:  NFTVLDAETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANKEWRKFWKLKAIPKAK-----------------------

Query:  ------ICVTHDESTK-HALWECKMGKLELNGILDMDDE
               C +H E T  HALWECK  K E   +  + DE
Subjt:  ------ICVTHDESTK-HALWECKMGKLELNGILDMDDE

B9FYJ3 Uncharacterized protein2.6e-2330.2Show/hide
Query:  SAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINKLCAR--------------------------------------------WKVGNERYIQIDQDPW
        + GGKEILIKA++QA+P + M  FKLP S+C+E+ KL                                               W +GN + +++ +DPW
Subjt:  SAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINKLCAR--------------------------------------------WKVGNERYIQIDQDPW

Query:  LDSEGSKIPILTTNDLKGKRVQKIIDDQGNWIEEKIWENFTVLDAETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANK
        +    S+ PI    + + + V  +ID  G+W  +KI  +F  +DAE ILN     R  +D I W  D+ G F+V+SAY+L    A  ++ S+S+   +++
Subjt:  LDSEGSKIPILTTNDLKGKRVQKIIDDQGNWIEEKIWENFTVLDAETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANK

Query:  EWRKFWKLKAIPKAKI----CVTHDESTKHALWECKMGKLELNGI
             WK  A  K KI     +T+  +T   L   K  KLE++ I
Subjt:  EWRKFWKLKAIPKAKI----CVTHDESTKHALWECKMGKLELNGI

Q0IPZ9 Os12g0156200 protein4.9e-2229.28Show/hide
Query:  SAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINK-----------------------------------------------------------LCAR-
        S GGKE+LIKA++QAIP + M  FKLP S+ D++ K                                                           LCAR 
Subjt:  SAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINK-----------------------------------------------------------LCAR-

Query:  ---------------------------------------WKVGNERYIQIDQDPWLDSEGSKIPILTTNDLKGKRVQKIIDDQGNWIEEKIWENFTVLDA
                                               W+VGN   I+I +D WL  + S+ PI    + + K V  +I + G+W   KI + F  LDA
Subjt:  ---------------------------------------WKVGNERYIQIDQDPWLDSEGSKIPILTTNDLKGKRVQKIIDDQGNWIEEKIWENFTVLDA

Query:  ETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANKEWRKFWKLKAIPKAKICVTHDESTKHA-LWECKMGKLELNGILDM
        E ILN     R  +D I W  DK GMF+V+SAY L  Q  N  E+S+S   N NK W   WK K   K KI      S   A +   K  KLE + +  +
Subjt:  ETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANKEWRKFWKLKAIPKAKICVTHDESTKHA-LWECKMGKLELNGILDM

Query:  DDEE
         D E
Subjt:  DDEE

Q94HY0 Retrotransposon protein, putative, unclassified5.7e-2329.61Show/hide
Query:  SAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINK-----------------------------------------------------------LCAR-
        S GGKE+LIKA++QAIP + M  FKLP S+ D++ K                                                           LCAR 
Subjt:  SAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINK-----------------------------------------------------------LCAR-

Query:  ---------------------------------------WKVGNERYIQIDQDPWLDSEGSKIPILTTNDLKGKRVQKIIDDQGNWIEEKIWENFTVLDA
                                               W+VGN   I+I +DPWL  + S+ PI    + + K V  +I + G+W   KI + F  LDA
Subjt:  ---------------------------------------WKVGNERYIQIDQDPWLDSEGSKIPILTTNDLKGKRVQKIIDDQGNWIEEKIWENFTVLDA

Query:  ETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANKEWRKFWKLKAIPKAKICVTHDESTKHA-LWECKMGKLELNGILDM
        E ILN     R  +D I W  DK GMF+V+SAY L  Q  N  E+S+S   N NK W   WK K   K KI      S   A +   K  KLE + +  +
Subjt:  ETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANKEWRKFWKLKAIPKAKICVTHDESTKHA-LWECKMGKLELNGILDM

Query:  DDEE
         D E
Subjt:  DDEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein7.7e-0422.96Show/hide
Query:  RWKVGNERYIQIDQDPWLDSEGSKIPILTTNDLKGKRVQKIIDDQGN---WIEEKIWENFTVLDAETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYL
        R  +G+ + I+I  D  +DS   + P+ T    K   +  + + +G+   W + KI +     D   I      +  + D+IIW+ +  G +TV+S Y+L
Subjt:  RWKVGNERYIQIDQDPWLDSEGSKIPILTTNDLKGKRVQKIIDDQGN---WIEEKIWENFTVLDAETILNTPRGERDRKDEIIWSKDKKGMFTVKSAYYL

Query:  VQQQANHSEASTSNETNANKEWRKFWKLKAIPKAK
        +    + +  + +    +     + W L  +PK K
Subjt:  VQQQANHSEASTSNETNANKEWRKFWKLKAIPKAK

AT4G29090.1 Ribonuclease H-like superfamily protein1.4e-0827.84Show/hide
Query:  EINKLCARWKVGNERYIQIDQDPWLDSEGS-------KIPILTTNDLKG-KRVQKIIDDQG-NWIEEKIWENFTVLDAETILNTPRGERDRKDEIIWSKD
        EI +  AR  VGN   I I +  WLDS+ +       ++P      +    +V  +ID+ G  W ++ I   F  ++ + I     G R   D   W   
Subjt:  EINKLCARWKVGNERYIQIDQDPWLDSEGS-------KIPILTTNDLKG-KRVQKIIDDQG-NWIEEKIWENFTVLDAETILNTPRGERDRKDEIIWSKD

Query:  KKGMFTVKSAYYLVQQQAN-HSEASTSNETNANKEWRKFWKLKAIPKAKICVTHDESTKHALWECKMGKLELNGIL
          G +TVKS Y+++ Q  N  S     +E + N  ++K WK +  PK           +H LW+C    L + G L
Subjt:  KKGMFTVKSAYYLVQQQAN-HSEASTSNETNANKEWRKFWKLKAIPKAKICVTHDESTKHALWECKMGKLELNGIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCAGCTGGTGGAAAAGAAATCCTCATAAAGGCCATTGTACAGGCAATTCCAACATTCACAATGAGCTGCTTCAAACTACCTGTGAGCTTATGTGATGAAATCAA
CAAACTATGTGCAAGGTGGAAGGTAGGCAACGAGAGATATATCCAAATAGACCAAGACCCGTGGCTTGACAGTGAAGGGAGCAAAATTCCCATACTAACAACAAATGACC
TGAAAGGGAAAAGGGTCCAAAAGATAATTGATGATCAGGGGAATTGGATAGAAGAAAAAATCTGGGAGAACTTCACAGTCCTGGATGCTGAAACCATTCTCAATACTCCA
AGGGGGGAAAGAGATAGAAAGGATGAAATAATTTGGAGTAAAGATAAGAAGGGTATGTTTACTGTTAAGAGCGCGTACTATCTAGTCCAACAACAGGCCAACCACTCTGA
AGCCTCAACGTCAAATGAAACAAATGCCAATAAGGAATGGAGGAAGTTTTGGAAACTCAAAGCAATCCCAAAGGCAAAAATATGTGTGACACATGATGAATCCACAAAAC
ATGCTCTATGGGAGTGCAAAATGGGGAAATTGGAACTCAATGGAATACTGGACATGGATGATGAAGAATTTAAAGGAGGAAGAGCTAGAGCAAGCAATCCTGATCCTTTG
GAGCCTATGGAGCTACAGAAACACAATCGCTCAAACAAGCAGCAAGCCAGACAAGATTTCAATGATACGAGCAGTCGAAAGAAGCCTAGAATTAAGAGAGCAGACGAAAA
TTCATACCTAAATCTCCAGCAACGAGGCAATCGACCCAAATTAAAGACCCTCATGAGTCACGAAAGATGGACTCCACCGCCGGCTAATACGTGGAAATTAAATACGGATG
CATCCTGGAACGACAAGCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCTCAGCTGGTGGAAAAGAAATCCTCATAAAGGCCATTGTACAGGCAATTCCAACATTCACAATGAGCTGCTTCAAACTACCTGTGAGCTTATGTGATGAAATCAA
CAAACTATGTGCAAGGTGGAAGGTAGGCAACGAGAGATATATCCAAATAGACCAAGACCCGTGGCTTGACAGTGAAGGGAGCAAAATTCCCATACTAACAACAAATGACC
TGAAAGGGAAAAGGGTCCAAAAGATAATTGATGATCAGGGGAATTGGATAGAAGAAAAAATCTGGGAGAACTTCACAGTCCTGGATGCTGAAACCATTCTCAATACTCCA
AGGGGGGAAAGAGATAGAAAGGATGAAATAATTTGGAGTAAAGATAAGAAGGGTATGTTTACTGTTAAGAGCGCGTACTATCTAGTCCAACAACAGGCCAACCACTCTGA
AGCCTCAACGTCAAATGAAACAAATGCCAATAAGGAATGGAGGAAGTTTTGGAAACTCAAAGCAATCCCAAAGGCAAAAATATGTGTGACACATGATGAATCCACAAAAC
ATGCTCTATGGGAGTGCAAAATGGGGAAATTGGAACTCAATGGAATACTGGACATGGATGATGAAGAATTTAAAGGAGGAAGAGCTAGAGCAAGCAATCCTGATCCTTTG
GAGCCTATGGAGCTACAGAAACACAATCGCTCAAACAAGCAGCAAGCCAGACAAGATTTCAATGATACGAGCAGTCGAAAGAAGCCTAGAATTAAGAGAGCAGACGAAAA
TTCATACCTAAATCTCCAGCAACGAGGCAATCGACCCAAATTAAAGACCCTCATGAGTCACGAAAGATGGACTCCACCGCCGGCTAATACGTGGAAATTAAATACGGATG
CATCCTGGAACGACAAGCAGTAG
Protein sequenceShow/hide protein sequence
MFSAGGKEILIKAIVQAIPTFTMSCFKLPVSLCDEINKLCARWKVGNERYIQIDQDPWLDSEGSKIPILTTNDLKGKRVQKIIDDQGNWIEEKIWENFTVLDAETILNTP
RGERDRKDEIIWSKDKKGMFTVKSAYYLVQQQANHSEASTSNETNANKEWRKFWKLKAIPKAKICVTHDESTKHALWECKMGKLELNGILDMDDEEFKGGRARASNPDPL
EPMELQKHNRSNKQQARQDFNDTSSRKKPRIKRADENSYLNLQQRGNRPKLKTLMSHERWTPPPANTWKLNTDASWNDKQ