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Lag0027833 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027833
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr8:5684251..5684879
RNA-Seq ExpressionLag0027833
SyntenyLag0027833
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022136678.1 uncharacterized protein LOC111008330 [Momordica charantia]2.8e-2158.82Show/hide
Query:  GERFEYALRFNFRASNNEAEYETLLAGLKLAREIGS-NLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARLQ
        GERF+YAL FNFR SNNEAEYE LLAGL++ARE+G+ ++ V SDSQL+V Q+  +YQAK+ RM +YL+K +  +A+FK  EV Q  RS+N+N D+LA+L 
Subjt:  GERFEYALRFNFRASNNEAEYETLLAGLKLAREIGS-NLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARLQ

Query:  QT
         T
Subjt:  QT

XP_022150038.1 uncharacterized protein K02A2.6-like [Momordica charantia]8.0e-2161.62Show/hide
Query:  GERFEYALRFNFRASNNEAEYETLLAGLKLAREIG-SNLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARL
        GERFEYALRFNFR SNNEAEYE LLAGL++A+ +G S++ V SDSQLIV Q+  +YQAK+ RM +YL K +  LA+F+  EV Q  RS N+N D+LA+L
Subjt:  GERFEYALRFNFRASNNEAEYETLLAGLKLAREIG-SNLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARL

XP_022152157.1 uncharacterized protein LOC111019946 [Momordica charantia]1.4e-2061.62Show/hide
Query:  GERFEYALRFNFRASNNEAEYETLLAGLKLAREIGSN-LVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARL
        GERF+YALRFNFR SNNEAEYE LLAGL +A+ +G+N + V SDSQLIV Q+  +YQAK+ RM +YLSK +  LA+F   EV Q  RS+N+N D+LA+L
Subjt:  GERFEYALRFNFRASNNEAEYETLLAGLKLAREIGSN-LVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARL

XP_022154103.1 uncharacterized protein LOC111021439 [Momordica charantia]4.3e-2262.38Show/hide
Query:  ERFEYALRFNFRASNNEAEYETLLAGLKLAREIG-SNLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARLQQ
        ERFEYALRFNF ASNNEAEYE LLAGLK+AR +G  N+++ SDSQLIV QV  ++QA+E RM +YLS+ +  L +F K E+RQ  R+QN N D+LARL  
Subjt:  ERFEYALRFNFRASNNEAEYETLLAGLKLAREIG-SNLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARLQQ

Query:  T
        T
Subjt:  T

XP_022156050.1 uncharacterized protein LOC111023020 [Momordica charantia]3.6e-2160.61Show/hide
Query:  GERFEYALRFNFRASNNEAEYETLLAGLKLAREIGSN-LVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARL
        GERFEYALRFNFR SNNEAEYE LLAGL++A+ +G+N   V SDSQL+V Q+  +YQ K+ RM +YLSK +  LA+F  CEV Q  RS+N+N D L++L
Subjt:  GERFEYALRFNFRASNNEAEYETLLAGLKLAREIGSN-LVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARL

TrEMBL top hitse value%identityAlignment
A0A6J1C878 Ribonuclease H1.3e-2158.82Show/hide
Query:  GERFEYALRFNFRASNNEAEYETLLAGLKLAREIGS-NLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARLQ
        GERF+YAL FNFR SNNEAEYE LLAGL++ARE+G+ ++ V SDSQL+V Q+  +YQAK+ RM +YL+K +  +A+FK  EV Q  RS+N+N D+LA+L 
Subjt:  GERFEYALRFNFRASNNEAEYETLLAGLKLAREIGS-NLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARLQ

Query:  QT
         T
Subjt:  QT

A0A6J1D8D8 Ribonuclease H3.9e-2161.62Show/hide
Query:  GERFEYALRFNFRASNNEAEYETLLAGLKLAREIG-SNLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARL
        GERFEYALRFNFR SNNEAEYE LLAGL++A+ +G S++ V SDSQLIV Q+  +YQAK+ RM +YL K +  LA+F+  EV Q  RS N+N D+LA+L
Subjt:  GERFEYALRFNFRASNNEAEYETLLAGLKLAREIG-SNLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARL

A0A6J1DFF1 uncharacterized protein LOC1110199466.6e-2161.62Show/hide
Query:  GERFEYALRFNFRASNNEAEYETLLAGLKLAREIGSN-LVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARL
        GERF+YALRFNFR SNNEAEYE LLAGL +A+ +G+N + V SDSQLIV Q+  +YQAK+ RM +YLSK +  LA+F   EV Q  RS+N+N D+LA+L
Subjt:  GERFEYALRFNFRASNNEAEYETLLAGLKLAREIGSN-LVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARL

A0A6J1DJC7 Ribonuclease H2.1e-2262.38Show/hide
Query:  ERFEYALRFNFRASNNEAEYETLLAGLKLAREIG-SNLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARLQQ
        ERFEYALRFNF ASNNEAEYE LLAGLK+AR +G  N+++ SDSQLIV QV  ++QA+E RM +YLS+ +  L +F K E+RQ  R+QN N D+LARL  
Subjt:  ERFEYALRFNFRASNNEAEYETLLAGLKLAREIG-SNLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARLQQ

Query:  T
        T
Subjt:  T

A0A6J1DP79 uncharacterized protein LOC1110230201.7e-2160.61Show/hide
Query:  GERFEYALRFNFRASNNEAEYETLLAGLKLAREIGSN-LVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARL
        GERFEYALRFNFR SNNEAEYE LLAGL++A+ +G+N   V SDSQL+V Q+  +YQ K+ RM +YLSK +  LA+F  CEV Q  RS+N+N D L++L
Subjt:  GERFEYALRFNFRASNNEAEYETLLAGLKLAREIGSN-LVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARL

SwissProt top hitse value%identityAlignment
Q9HSF6 Ribonuclease HI4.2e-0432.94Show/hide
Query:  RASNNEAEYETLLAGLKLAREIG-SNLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLA
        RA+NN+AEY+ L+A L+ A + G  ++ ++ DSQL+ KQ+T  +   +  + +   +A+E L  F    +    R+ N   D+LA
Subjt:  RASNNEAEYETLLAGLKLAREIG-SNLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLA

Arabidopsis top hitse value%identityAlignment
AT1G24090.1 RNase H family protein2.5e-0434.88Show/hide
Query:  ASNNEAEYETLLAGLKLAREIG-SNLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARL
        A+NN AEY  L+ GLK A E G  N+ V+ DS+L+  Q+  Q++   + + +   +AK    K    E+    R+ NA+ D  A L
Subjt:  ASNNEAEYETLLAGLKLAREIG-SNLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARL

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.3e-0534.52Show/hide
Query:  ASNNEAEYETLLAGLKLAREIG-SNLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLA
        A+NN AEY  LL GL+ A + G  N+ V  DS L+  QV   ++    +M +   +AKE +  FK  +++  +R +N+  D  A
Subjt:  ASNNEAEYETLLAGLKLAREIG-SNLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLA

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.3e-0534.52Show/hide
Query:  ASNNEAEYETLLAGLKLAREIG-SNLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLA
        A+NN AEY  LL GL+ A + G  N+ V  DS L+  QV   ++    +M +   +AKE +  FK  +++  +R +N+  D  A
Subjt:  ASNNEAEYETLLAGLKLAREIG-SNLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGCAGGAATATTGTTGGAATCTCTAGAGGGGAGAGATTTGAGTATGCTTTGAGATTCAATTTTAGAGCCTCAAACAATGAAGCAGAATATGAAACTCTCCTTGC
AGGACTTAAGTTGGCCAGGGAAATTGGATCAAATCTTGTGGTTCAGAGTGATTCACAGTTAATTGTGAAACAAGTGACAGTCCAGTATCAAGCTAAAGAACAGAGGATGG
TTCAATATTTATCCAAAGCTAAAGAGCCACTAGCCAAGTTCAAAAAGTGTGAGGTTAGGCAAAGCTCGAGATCCCAAAATGCTAATGTTGATTCATTAGCTCGTTTGCAG
CAGACAGAGCTGAAGCCAAGAGGTTACAGAGGCGAGCAACGCACTATGTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAGCAGGAATATTGTTGGAATCTCTAGAGGGGAGAGATTTGAGTATGCTTTGAGATTCAATTTTAGAGCCTCAAACAATGAAGCAGAATATGAAACTCTCCTTGC
AGGACTTAAGTTGGCCAGGGAAATTGGATCAAATCTTGTGGTTCAGAGTGATTCACAGTTAATTGTGAAACAAGTGACAGTCCAGTATCAAGCTAAAGAACAGAGGATGG
TTCAATATTTATCCAAAGCTAAAGAGCCACTAGCCAAGTTCAAAAAGTGTGAGGTTAGGCAAAGCTCGAGATCCCAAAATGCTAATGTTGATTCATTAGCTCGTTTGCAG
CAGACAGAGCTGAAGCCAAGAGGTTACAGAGGCGAGCAACGCACTATGTACTGA
Protein sequenceShow/hide protein sequence
MWSRNIVGISRGERFEYALRFNFRASNNEAEYETLLAGLKLAREIGSNLVVQSDSQLIVKQVTVQYQAKEQRMVQYLSKAKEPLAKFKKCEVRQSSRSQNANVDSLARLQ
QTELKPRGYRGEQRTMY