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Lag0027845 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027845
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr8:5991155..5998369
RNA-Seq ExpressionLag0027845
SyntenyLag0027845
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]9.7e-1172.34Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        MRDCPLICTGESG   DSI L F GQDR+GSWE + TRWN LLP  R
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]6.9e-0971.11Show/hide
Query:  DCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        DCPLI T ESG  ADS+ L FWGQDRV SWE + TRWNSLLP  R
Subjt:  DCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-0757.97Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPD-IRGFLFAGWTINRLFIRGALVLK
        +RDCPLICTGESG  ADSI L FWGQDRVG       RW  +  D I  F   G     LFIRGALVL+
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPD-IRGFLFAGWTINRLFIRGALVLK
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]8.8e-1263.46Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRGFLFA
        +RDCPL CTGESG   DSI L FWGQDRVGSWE + TRWNS +P  R ++++
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRGFLFA
TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]9.4e-0678.79Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
        +RDCPLICTGESG  ADSI L FWGQDRVG W+
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein4.7e-1172.34Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        MRDCPLICTGESG   DSI L F GQDR+GSWE + TRWN LLP  R
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
A0A5A7U202 Reverse transcriptase4.9e-0857.97Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPD-IRGFLFAGWTINRLFIRGALVLK
        +RDCPLICTGESG  ADSI L FWGQDRVG       RW  +  D I  F   G     LFIRGALVL+
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPD-IRGFLFAGWTINRLFIRGALVLK
A0A5A7U2P4 Integrase catalytic domain-containing protein3.4e-0971.11Show/hide
Query:  DCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        DCPLI T ESG  ADS+ L FWGQDRV SWE + TRWNSLLP  R
Subjt:  DCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
A0A5D3C3J6 Gag/pol protein4.2e-1263.46Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRGFLFA
        +RDCPL CTGESG   DSI L FWGQDRVGSWE + TRWNS +P  R ++++
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRGFLFA
A0A5D3CBX3 Reverse transcriptase4.5e-0678.79Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
        +RDCPLICTGESG  ADSI L FWGQDRVG W+
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCACCAAGAGGTGCCTTTTATAGGCCTGGAATGGGGGCAGCGTCGCGACGCTACATTGCACAACGTCGCGACGCTGCGATGCACGCGTCTTGTTGCCCAAGAAAT
GGGTAGCGTCGCGTCGCTATCTACACAGCGTCTCGACGCTGACCCAATTTCCAGAATTTCCAGCTTCGGATCACATCGTCTGTTTTTAAAGAACAAAGCGAGTCGCGCCA
ATAGTGTCCCCAAGATTAAGCCTCACGCCATTCGCAGCCGTTTGCAGCTGCCCCAGCCGCATGCCGTTCTCAGCCATTCGCACGCCATTCCCAGCCGTTCGCAGCCCAGT
TCGTACCCTCTAGTCGTTTGTTCTTCTCAGCCGCTAGCAGTCGCAACCGTGTTTGCAGCAGCAGTTCGAGTTCTCAATCGCAACCGTTCAGCTGCCATTCAAGTGCAGTT
CAGCCGCCGTTCAAGTGTCGTTCAGCCCACTGTTTTAGACTTTTGGTTGTTCATTAGAGGAGCACTGGCAACTTGGCCTCAATCCTGTGTGGATTATGGACTCCTGTCCA
TGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCTGTTCGCCGACTCAATAAGCTTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACGTAGTCTTACA
AGATGGAATTCACTCCTTCCCGATATTAGGGGATTTCTGTTTGCTGGTTGGACCATAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGACCAAGAGGTAGCCCA
GGGAAATACATCTGCAGTGAGAAGAGTGCAGCTGTGGTTCTTTAGTGGAGTGAACCACAGTCCATCAGGTCCCACCGATAGCTCTATAAGGGCGTTGAGAGAAGAGTTCC
AGAGAAGAAAATCCTTAGATTATTGGGGTTCTCACATAACCACTCAAGACATATACCTTGGAGGATACCGGTGCAATCTTGACGATGGTGTTCGTGATTTTTGCAGCAAG
ATCAAGATCAAAAGTTGGGTGTTGGTTGTTGTATTTTTTCTGTTTATCAAAGGTTTTGGCGAAGCGGTTCAAGAATTTCTTCAAGGAGCAATCAAGAATCATTCGTTGAA
GTATTCAGAGTCGTCAATGGAGCGAGCATCCATCTTCGGCGTCATCCTCGCTCTCCAGCCGGCAGCAGCTACCTCCGGCGACGGGCGTTCCTCCAGCGGTGTAGCGACTC
TCGGTAGCGGCAGTGGGCGACGTCGTCTCTTTCGGCGGTGCAGCAACCAACGACGACAACAGGTTCGGGCGGTGCTTCTTCACGGATCTGCGGCGACGATCCCCGACAAC
TCCAGCCCACAACAACACGTCCTTTTGCTCTCTCTACGTCTCCTCCGACGAACTTCGAGCGGCGTAGCAGTAAGGTGCAGCGGGGGCATTTTTCCGGCGAGTTCAGACTG
A
mRNA sequenceShow/hide mRNA sequence
ATGAGGCACCAAGAGGTGCCTTTTATAGGCCTGGAATGGGGGCAGCGTCGCGACGCTACATTGCACAACGTCGCGACGCTGCGATGCACGCGTCTTGTTGCCCAAGAAAT
GGGTAGCGTCGCGTCGCTATCTACACAGCGTCTCGACGCTGACCCAATTTCCAGAATTTCCAGCTTCGGATCACATCGTCTGTTTTTAAAGAACAAAGCGAGTCGCGCCA
ATAGTGTCCCCAAGATTAAGCCTCACGCCATTCGCAGCCGTTTGCAGCTGCCCCAGCCGCATGCCGTTCTCAGCCATTCGCACGCCATTCCCAGCCGTTCGCAGCCCAGT
TCGTACCCTCTAGTCGTTTGTTCTTCTCAGCCGCTAGCAGTCGCAACCGTGTTTGCAGCAGCAGTTCGAGTTCTCAATCGCAACCGTTCAGCTGCCATTCAAGTGCAGTT
CAGCCGCCGTTCAAGTGTCGTTCAGCCCACTGTTTTAGACTTTTGGTTGTTCATTAGAGGAGCACTGGCAACTTGGCCTCAATCCTGTGTGGATTATGGACTCCTGTCCA
TGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCTGTTCGCCGACTCAATAAGCTTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACGTAGTCTTACA
AGATGGAATTCACTCCTTCCCGATATTAGGGGATTTCTGTTTGCTGGTTGGACCATAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGACCAAGAGGTAGCCCA
GGGAAATACATCTGCAGTGAGAAGAGTGCAGCTGTGGTTCTTTAGTGGAGTGAACCACAGTCCATCAGGTCCCACCGATAGCTCTATAAGGGCGTTGAGAGAAGAGTTCC
AGAGAAGAAAATCCTTAGATTATTGGGGTTCTCACATAACCACTCAAGACATATACCTTGGAGGATACCGGTGCAATCTTGACGATGGTGTTCGTGATTTTTGCAGCAAG
ATCAAGATCAAAAGTTGGGTGTTGGTTGTTGTATTTTTTCTGTTTATCAAAGGTTTTGGCGAAGCGGTTCAAGAATTTCTTCAAGGAGCAATCAAGAATCATTCGTTGAA
GTATTCAGAGTCGTCAATGGAGCGAGCATCCATCTTCGGCGTCATCCTCGCTCTCCAGCCGGCAGCAGCTACCTCCGGCGACGGGCGTTCCTCCAGCGGTGTAGCGACTC
TCGGTAGCGGCAGTGGGCGACGTCGTCTCTTTCGGCGGTGCAGCAACCAACGACGACAACAGGTTCGGGCGGTGCTTCTTCACGGATCTGCGGCGACGATCCCCGACAAC
TCCAGCCCACAACAACACGTCCTTTTGCTCTCTCTACGTCTCCTCCGACGAACTTCGAGCGGCGTAGCAGTAAGGTGCAGCGGGGGCATTTTTCCGGCGAGTTCAGACTG
A
Protein sequenceShow/hide protein sequence
MRHQEVPFIGLEWGQRRDATLHNVATLRCTRLVAQEMGSVASLSTQRLDADPISRISSFGSHRLFLKNKASRANSVPKIKPHAIRSRLQLPQPHAVLSHSHAIPSRSQPS
SYPLVVCSSQPLAVATVFAAAVRVLNRNRSAAIQVQFSRRSSVVQPTVLDFWLFIRGALATWPQSCVDYGLLSMRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLT
RWNSLLPDIRGFLFAGWTINRLFIRGALVLKDQEVAQGNTSAVRRVQLWFFSGVNHSPSGPTDSSIRALREEFQRRKSLDYWGSHITTQDIYLGGYRCNLDDGVRDFCSK
IKIKSWVLVVVFFLFIKGFGEAVQEFLQGAIKNHSLKYSESSMERASIFGVILALQPAAATSGDGRSSSGVATLGSGSGRRRLFRRCSNQRRQQVRAVLLHGSAATIPDN
SSPQQHVLLLSLRLLRRTSSGVAVRCSGGIFPASSD