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Lag0027851 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027851
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetroelement pol polyprotein-like
Genome locationchr8:6040875..6041427
RNA-Seq ExpressionLag0027851
SyntenyLag0027851
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3473721.1 retroelement pol polyprotein-like [Gossypium australe]9.6e-0553.45Show/hide
Query:  PQQNKLATHPNSGNSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKARLPG
        PQQ +      + NSLE ++K YMA+ND LIQS  A+L+ LE QV QLA EL+ RL G
Subjt:  PQQNKLATHPNSGNSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKARLPG

XP_023521781.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111785639, partial [Cucurbita pepo subsp. pepo]9.6e-0550.75Show/hide
Query:  NQFEFAKSQALPQ-QNKLATHPNSGNSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKAR
        NQ  +   QA  Q +         G SLE ++K+YMA+ND +IQS QASLR LE QV QLANEL+ R
Subjt:  NQFEFAKSQALPQ-QNKLATHPNSGNSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKAR

XP_030478190.1 uncharacterized protein LOC115695250 [Cannabis sativa]5.6e-0549.35Show/hide
Query:  QAQQKVVNQFEFAKSQALPQQNKLATHPNSGNSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKARLPGT
        QAQ K      F++     Q ++    P S  SLE +M+DYMA+ND +IQS  ASLR LE Q+ QLAN+LK RL GT
Subjt:  QAQQKVVNQFEFAKSQALPQQNKLATHPNSGNSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKARLPGT

XP_030502440.1 uncharacterized protein LOC115717596 [Cannabis sativa]1.3e-0433.75Show/hide
Query:  MSTIRADIAELANALKNITVVSNVQQLPVVELVAVVNQVA--------------ANLVSIVVGVTTQLCMGRARKQFASPQAQQKVVNQFEFAKSQALPQ
        ++T+ A +A + N LKN+ +  +VQ    ++   + + V               +N  +           G      +  QAQ K     EF++ Q  PQ
Subjt:  MSTIRADIAELANALKNITVVSNVQQLPVVELVAVVNQVA--------------ANLVSIVVGVTTQLCMGRARKQFASPQAQQKVVNQFEFAKSQALPQ

Query:  QNKLATHPNSG---NSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKARLPGT
        Q     H   G   +SLE +M+DYMA+NDV+IQS  ASLR LE Q+ QLAN+LK R  GT
Subjt:  QNKLATHPNSG---NSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKARLPGT

XP_030504954.1 uncharacterized protein LOC115719921 [Cannabis sativa]2.5e-0563.83Show/hide
Query:  NSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKARLPGTF
        +SLE +M+DYMA+ND +IQS  ASLR LE Q+  LANELKAR  G+F
Subjt:  NSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKARLPGTF

TrEMBL top hitse value%identityAlignment
A0A5B6VNM1 Uncharacterized protein1.0e-0449.18Show/hide
Query:  QALPQQNKLATHPNSGNSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKARLPG
        Q +P+QN      +S +SLE ++K+YMA+NDV+IQS  ASLR LE QV ++A  L +R  G
Subjt:  QALPQQNKLATHPNSGNSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKARLPG

A0A5B6VWJ0 Retroelement pol polyprotein-like4.6e-0553.45Show/hide
Query:  PQQNKLATHPNSGNSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKARLPG
        PQQ +      + NSLE ++K YMA+ND LIQS  A+L+ LE QV QLA EL+ RL G
Subjt:  PQQNKLATHPNSGNSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKARLPG

A0A6J1DVZ9 uncharacterized protein LOC1110249701.3e-0439.17Show/hide
Query:  ELVAVVNQVAANLVSIVVGVTTQLC------MGRARKQFA---SPQAQQKVVNQFEFAKSQALPQQNKLATHP--NSGNSLELMMKDYMARNDVLIQSHQ
        E +A +N   ANL ++V  + T         +GR  ++     + Q QQKV  Q        +P Q +  T P  NS NS+E MM++YM RND LIQS  
Subjt:  ELVAVVNQVAANLVSIVVGVTTQLC------MGRARKQFA---SPQAQQKVVNQFEFAKSQALPQQNKLATHP--NSGNSLELMMKDYMARNDVLIQSHQ

Query:  ASLRVLEFQVDQLANELKAR
        A  R LE Q+ Q+AN+LK R
Subjt:  ASLRVLEFQVDQLANELKAR

A0A6J1DYG0 uncharacterized protein LOC1110257641.3e-0449.21Show/hide
Query:  QALPQQNKLATHPNSGNSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKARLPGTF
        Q   Q+ +     N+ ++LE MMK+YMAR D +IQS  AS+R  E Q+ QLANELK R  G+F
Subjt:  QALPQQNKLATHPNSGNSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKARLPGTF

A0A6J1G7Q6 uncharacterized protein LOC1114515981.3e-0450.75Show/hide
Query:  NQFEFAKSQALPQ-QNKLATHPNSGNSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKAR
        NQ  +   QA  Q +        SG  LE ++K+YMARND +IQS Q SLR LE QV QLANEL+ R
Subjt:  NQFEFAKSQALPQ-QNKLATHPNSGNSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACCATTAGGGCCGATATTGCAGAATTAGCTAACGCTCTTAAAAACATAACTGTGGTAAGTAATGTTCAGCAGTTGCCAGTGGTGGAGCTTGTTGCAGTTGTAAA
CCAAGTGGCAGCAAATCTTGTGTCTATTGTGGTTGGTGTAACCACCCAACTTTGCATGGGGAGGGCAAGGAAGCAATTCGCGAGCCCCCAAGCACAACAAAAGGTGGTGA
ACCAGTTCGAATTTGCTAAATCACAGGCATTGCCCCAACAAAATAAGCTGGCTACCCATCCAAACTCGGGTAATTCTCTGGAGTTAATGATGAAGGATTATATGGCTCGT
AATGATGTCTTAATCCAAAGTCACCAAGCTTCATTGAGAGTCCTAGAGTTTCAAGTGGACCAGCTAGCTAATGAGCTGAAGGCACGACTTCCGGGAACATTCCTTCATAT
ATTGAACACCCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTACCATTAGGGCCGATATTGCAGAATTAGCTAACGCTCTTAAAAACATAACTGTGGTAAGTAATGTTCAGCAGTTGCCAGTGGTGGAGCTTGTTGCAGTTGTAAA
CCAAGTGGCAGCAAATCTTGTGTCTATTGTGGTTGGTGTAACCACCCAACTTTGCATGGGGAGGGCAAGGAAGCAATTCGCGAGCCCCCAAGCACAACAAAAGGTGGTGA
ACCAGTTCGAATTTGCTAAATCACAGGCATTGCCCCAACAAAATAAGCTGGCTACCCATCCAAACTCGGGTAATTCTCTGGAGTTAATGATGAAGGATTATATGGCTCGT
AATGATGTCTTAATCCAAAGTCACCAAGCTTCATTGAGAGTCCTAGAGTTTCAAGTGGACCAGCTAGCTAATGAGCTGAAGGCACGACTTCCGGGAACATTCCTTCATAT
ATTGAACACCCTATAA
Protein sequenceShow/hide protein sequence
MSTIRADIAELANALKNITVVSNVQQLPVVELVAVVNQVAANLVSIVVGVTTQLCMGRARKQFASPQAQQKVVNQFEFAKSQALPQQNKLATHPNSGNSLELMMKDYMAR
NDVLIQSHQASLRVLEFQVDQLANELKARLPGTFLHILNTL