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Lag0027863 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027863
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr8:6189314..6190734
RNA-Seq ExpressionLag0027863
SyntenyLag0027863
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN73380.1 hypothetical protein VITISV_032547 [Vitis vinifera]4.4e-0628.57Show/hide
Query:  PLNIKLLNFNYLLWKNQLLNRIIAIDMESFINDTP-SPPKFLD-----------------------------------------------------AIET
        PL IKL   NYL+WKNQLLN +I   +E  +++T   PPKFLD                                                     A  +
Subjt:  PLNIKLLNFNYLLWKNQLLNRIIAIDMESFINDTP-SPPKFLD-----------------------------------------------------AIET

Query:  QARLEKQCFVDQLNLVQANLAIISTSS------------------------GQPQSSPRPSKWP----QSQNFNHPQCQICGKLDHTALVCYNRHNPLYH
         ARL K C   QL  ++        S                         GQPQ +P    WP     S N + P+CQICGK  HTAL+C++R N  Y 
Subjt:  QARLEKQCFVDQLNLVQANLAIISTSS------------------------GQPQSSPRPSKWP----QSQNFNHPQCQICGKLDHTALVCYNRHNPLYH

Query:  APN
         P+
Subjt:  APN

RVW56403.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]6.3e-0546.67Show/hide
Query:  MSSSTSTISIPLSTPVNPSQRLNVNPSQSQNQPLPPYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFI-NDTPSPPKFLDAIETQ
        MS++TS ++   +  +NP Q +N  P  S N     YP L+ PL IKL   N  LWKNQLLN IIA  +E FI  +TP P KFLD  + Q
Subjt:  MSSSTSTISIPLSTPVNPSQRLNVNPSQSQNQPLPPYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFI-NDTPSPPKFLDAIETQ

RVX04814.1 hypothetical protein CK203_024917 [Vitis vinifera]2.8e-0546.99Show/hide
Query:  PVNPSQRLNVNPSQSQNQPLP-------PYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFIN-DTPSPPKFLDAIETQ
        P  P+   N   + SQN P P       P P L+ PL+IKL   N LLW NQL+N IIA  +E FIN D  +PPK+LDA   Q
Subjt:  PVNPSQRLNVNPSQSQNQPLP-------PYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFIN-DTPSPPKFLDAIETQ

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]1.3e-0534.43Show/hide
Query:  QARLEKQCFVDQLNLVQANLAIISTSSGQPQSSPRPS------------------------------KWPQSQNFNHPQCQICGKLDHTALVCYNRHNPL
        +ARL+KQ  VDQLN+ QANL  +S      +  P+ S                              KWP   + +  QCQICGKL H+A VCY+R N  
Subjt:  QARLEKQCFVDQLNLVQANLAIISTSSGQPQSSPRPS------------------------------KWPQSQNFNHPQCQICGKLDHTALVCYNRHNPL

Query:  YHAPNTTSPSLQAYLNQLQSLP
        YH     + S QA  + +Q  P
Subjt:  YHAPNTTSPSLQAYLNQLQSLP

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]7.0e-0449.09Show/hide
Query:  PYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFINDT-PSPPKFLDAIETQ
        P+P L  PLN+KL + N+LLWKNQLLN +IA  +  +++ T   PP+FLD  + Q
Subjt:  PYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFINDT-PSPPKFLDAIETQ

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]2.8e-0540.48Show/hide
Query:  PLSTPVNPSQRLNVNPSQSQNQPLPPYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFINDT-PSPPKFLDAIETQARLE
        P S P+  S   N NP      PLP  P +  PL +KL + NY++WK QLLN +IA  +E F++ +   PP+FLD  + Q+  E
Subjt:  PLSTPVNPSQRLNVNPSQSQNQPLPPYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFINDT-PSPPKFLDAIETQARLE

TrEMBL top hitse value%identityAlignment
A0A438F8X3 Retrovirus-related Pol polyprotein from transposon RE13.1e-0546.67Show/hide
Query:  MSSSTSTISIPLSTPVNPSQRLNVNPSQSQNQPLPPYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFI-NDTPSPPKFLDAIETQ
        MS++TS ++   +  +NP Q +N  P  S N     YP L+ PL IKL   N  LWKNQLLN IIA  +E FI  +TP P KFLD  + Q
Subjt:  MSSSTSTISIPLSTPVNPSQRLNVNPSQSQNQPLPPYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFI-NDTPSPPKFLDAIETQ

A0A6J1DQX7 uncharacterized protein LOC1110223156.2e-0634.43Show/hide
Query:  QARLEKQCFVDQLNLVQANLAIISTSSGQPQSSPRPS------------------------------KWPQSQNFNHPQCQICGKLDHTALVCYNRHNPL
        +ARL+KQ  VDQLN+ QANL  +S      +  P+ S                              KWP   + +  QCQICGKL H+A VCY+R N  
Subjt:  QARLEKQCFVDQLNLVQANLAIISTSSGQPQSSPRPS------------------------------KWPQSQNFNHPQCQICGKLDHTALVCYNRHNPL

Query:  YHAPNTTSPSLQAYLNQLQSLP
        YH     + S QA  + +Q  P
Subjt:  YHAPNTTSPSLQAYLNQLQSLP

A0A6J1DQX7 uncharacterized protein LOC1110223153.4e-0449.09Show/hide
Query:  PYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFINDT-PSPPKFLDAIETQ
        P+P L  PLN+KL + N+LLWKNQLLN +IA  +  +++ T   PP+FLD  + Q
Subjt:  PYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFINDT-PSPPKFLDAIETQ

A0A6J1DQX7 uncharacterized protein LOC1110223151.4e-0546.99Show/hide
Query:  PVNPSQRLNVNPSQSQNQPLP-------PYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFIN-DTPSPPKFLDAIETQ
        P  P+   N   + SQN P P       P P L+ PL+IKL   N LLW NQL+N IIA  +E FIN D  +PPK+LDA   Q
Subjt:  PVNPSQRLNVNPSQSQNQPLP-------PYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFIN-DTPSPPKFLDAIETQ

A0A7J0EGI5 Uncharacterized protein1.4e-0540.48Show/hide
Query:  PLSTPVNPSQRLNVNPSQSQNQPLPPYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFINDT-PSPPKFLDAIETQARLE
        P S P+  S   N NP      PLP  P +  PL +KL + NY++WK QLLN +IA  +E F++ +   PP+FLD  + Q+  E
Subjt:  PLSTPVNPSQRLNVNPSQSQNQPLPPYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFINDT-PSPPKFLDAIETQARLE

A5AG90 Uncharacterized protein2.1e-0628.57Show/hide
Query:  PLNIKLLNFNYLLWKNQLLNRIIAIDMESFINDTP-SPPKFLD-----------------------------------------------------AIET
        PL IKL   NYL+WKNQLLN +I   +E  +++T   PPKFLD                                                     A  +
Subjt:  PLNIKLLNFNYLLWKNQLLNRIIAIDMESFINDTP-SPPKFLD-----------------------------------------------------AIET

Query:  QARLEKQCFVDQLNLVQANLAIISTSS------------------------GQPQSSPRPSKWP----QSQNFNHPQCQICGKLDHTALVCYNRHNPLYH
         ARL K C   QL  ++        S                         GQPQ +P    WP     S N + P+CQICGK  HTAL+C++R N  Y 
Subjt:  QARLEKQCFVDQLNLVQANLAIISTSS------------------------GQPQSSPRPSKWP----QSQNFNHPQCQICGKLDHTALVCYNRHNPLYH

Query:  APN
         P+
Subjt:  APN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTCTTCTTCTAGTACCTCCTCCACCGGAAATGAAAACTTACCTGAGTTGCCTTCTTCCTCTACAACTGTCACTATCCCTATGTCATCATCCACTTCCACTATCTC
CATTCCTCTATCGACACCCGTGAACCCATCTCAGCGGTTAAATGTGAATCCATCCCAAAGTCAGAATCAACCTTTGCCGCCATATCCAATTCTTACTCCGCCGCTAAACA
TCAAGCTCTTGAACTTCAACTACTTGCTTTGGAAGAACCAGCTTCTTAATCGTATCATTGCAATTGATATGGAGAGTTTCATTAACGACACTCCTTCACCCCCAAAGTTC
TTGGACGCTATTGAAACCCAGGCTCGTCTTGAAAAACAATGTTTTGTGGATCAACTGAACTTGGTGCAAGCCAACCTTGCCATCATCTCCACTTCTTCTGGTCAACCACA
GTCTTCCCCCCGTCCTTCTAAATGGCCTCAATCACAAAATTTCAATCACCCTCAATGTCAGATATGTGGTAAGCTCGACCACACCGCCCTTGTTTGCTATAATCGCCATA
ACCCTCTATATCATGCTCCCAACACTACATCTCCTTCTTTGCAAGCCTATTTGAACCAACTTCAATCTCTTCCTCGGTCTTCCACTACCACATCTTCTGATAACCTACCT
GCACTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCTCTTCTTCTAGTACCTCCTCCACCGGAAATGAAAACTTACCTGAGTTGCCTTCTTCCTCTACAACTGTCACTATCCCTATGTCATCATCCACTTCCACTATCTC
CATTCCTCTATCGACACCCGTGAACCCATCTCAGCGGTTAAATGTGAATCCATCCCAAAGTCAGAATCAACCTTTGCCGCCATATCCAATTCTTACTCCGCCGCTAAACA
TCAAGCTCTTGAACTTCAACTACTTGCTTTGGAAGAACCAGCTTCTTAATCGTATCATTGCAATTGATATGGAGAGTTTCATTAACGACACTCCTTCACCCCCAAAGTTC
TTGGACGCTATTGAAACCCAGGCTCGTCTTGAAAAACAATGTTTTGTGGATCAACTGAACTTGGTGCAAGCCAACCTTGCCATCATCTCCACTTCTTCTGGTCAACCACA
GTCTTCCCCCCGTCCTTCTAAATGGCCTCAATCACAAAATTTCAATCACCCTCAATGTCAGATATGTGGTAAGCTCGACCACACCGCCCTTGTTTGCTATAATCGCCATA
ACCCTCTATATCATGCTCCCAACACTACATCTCCTTCTTTGCAAGCCTATTTGAACCAACTTCAATCTCTTCCTCGGTCTTCCACTACCACATCTTCTGATAACCTACCT
GCACTTTAG
Protein sequenceShow/hide protein sequence
MVSSSSTSSTGNENLPELPSSSTTVTIPMSSSTSTISIPLSTPVNPSQRLNVNPSQSQNQPLPPYPILTPPLNIKLLNFNYLLWKNQLLNRIIAIDMESFINDTPSPPKF
LDAIETQARLEKQCFVDQLNLVQANLAIISTSSGQPQSSPRPSKWPQSQNFNHPQCQICGKLDHTALVCYNRHNPLYHAPNTTSPSLQAYLNQLQSLPRSSTTTSSDNLP
AL