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Lag0027864 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027864
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionpre-rRNA-processing protein las1-like
Genome locationchr8:6218821..6223599
RNA-Seq ExpressionLag0027864
SyntenyLag0027864
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0090730 - Las1 complex (cellular component)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605947.1 Ribosomal biogenesis protein LAS1L, partial [Cucurbita argyrosperma subsp. sororia]9.6e-1577.97Show/hide
Query:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEY
        +A+ SSDLAFP++SKKSRS++L+GWKLAIAKI NKEP+LL DLLEA+LEKIKT EALEY
Subjt:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEY
KAG7010302.1 Ribosomal biogenesis protein LAS1L, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-1580Show/hide
Query:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEYG
        +A+TSSDLAFPK SKKS S +LDGWKL IAKI NKEP+LL DLL+AVLEKIKT EALEYG
Subjt:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEYG
KAG7035893.1 Ribosomal biogenesis protein LAS1L, partial [Cucurbita argyrosperma subsp. argyrosperma]9.6e-1577.97Show/hide
Query:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEY
        +A+ SSDLAFP++SKKSRS++L+GWKLAIAKI NKEP+LL DLLEA+LEKIKT EALEY
Subjt:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEY
XP_022957841.1 uncharacterized protein LOC111459262 [Cucurbita moschata]9.6e-1577.97Show/hide
Query:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEY
        +A+ SSDLAFP++SKKSRS++L+GWKLAIAKI NKEP+LL DLLEA+LEKIKT EALEY
Subjt:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEY
XP_022995044.1 uncharacterized protein LOC111490717 [Cucurbita maxima]9.6e-1577.97Show/hide
Query:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEY
        +A+ SSDLAFP++SKKSRS++L+GWKLAIAKI NKEP+LL DLLEA+LEKIKT EALEY
Subjt:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEY
TrEMBL top hitse value%identityAlignment
A0A5A7V7Q2 Pre-rRNA-processing protein las12.3e-1477.97Show/hide
Query:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEY
        +A+ SSDLAFPK+SKKS SS+LDGWKL +AKI NKEP+LL DLLEAVLEKIKT  ALEY
Subjt:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEY
A0A6J1FXW7 pre-rRNA-processing protein las1-like7.9e-1579.66Show/hide
Query:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEY
        +A+TSSDLAFPK SKKS S +LDGWKL IAKI NKEP+LL DLL+AVLEKIKT EALEY
Subjt:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEY
A0A6J1H0C5 uncharacterized protein LOC1114592624.7e-1577.97Show/hide
Query:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEY
        +A+ SSDLAFP++SKKSRS++L+GWKLAIAKI NKEP+LL DLLEA+LEKIKT EALEY
Subjt:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEY
A0A6J1J8U9 pre-rRNA-processing protein las1-like7.9e-1579.66Show/hide
Query:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEY
        +A+TSSDLAFPK SKKS S +LDGWKL IAKI NKEP+LL DLL+AVLEKIKT EALEY
Subjt:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEY
A0A6J1K4K1 uncharacterized protein LOC1114907174.7e-1577.97Show/hide
Query:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEY
        +A+ SSDLAFP++SKKSRS++L+GWKLAIAKI NKEP+LL DLLEA+LEKIKT EALEY
Subjt:  QAITSSDLAFPKDSKKSRSSILDGWKLAIAKILNKEPKLLFDLLEAVLEKIKTLEALEY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTCCAGCTCTTCAGGTCATTCGGTGTGCCTCAACCAAGGGGTTGTTTGTTTCATGGGTTTGGATTGGATTGGATTGGAATGGAAATGGATCACCATGTTTGGAA
GCCCTGGAATGAGATGGGTTTGGAATTGGTTGGATTCCAATGGGGTTTCGCCCTCCACCTCTCAGATCTGAGGTATTTTCGCCGTTTTCGAATTATTTCGGCGGATTTGT
GTCGGTGGCGGTGTAATCCCTCTTATTCGCTCGGATCTAAGATGCTGTCGGCGAGACACCCTATCGCCGTTTGGCTTCGACGATCTGGCCGCTTGCTGCTTCGTTATCCC
CCTTCCTCTCTTTTGCCGCCCCGAAGATGGAGGACTGTCCCCCTTGCCGCTTCGAATCTCCTTTCGTCTCTTCGCCGCCTCGAAGATGGAGGACTATTCTCCATGGTCGT
TGGGGCTCGCATTTTCATTCTCAGATGCTACACAATCAGTCCACCATTCGACGAGACCCGGCAGGAGACTGGTTTGGGGATGATAAGCTTGGTAGGGAGGCCGGAACGAG
TGAAAAAACAGGCAATAACGTCATCAGACTTGGCGTTTCCCAAAGATTCAAAAAAATCCAGAAGCTCCATATTGGATGGTTGGAAGCTTGCGATTGCTAAGATCTTAAAT
AAGGAACCAAAATTGCTTTTCGATCTGCTTGAGGCAGTTCTAGAGAAGATCAAGACTCTAGAAGCCTTGGAATATGGGGTTAGATCACACCCAGGACAACAACGGATTCA
AATTCGTGATCATAGGGGGTTTAATAACAGTGCAGAACTGACATTTAAGCCCAAAATTGTTGTAGTGTCACTTTTTCCTAAATTTGTTTTTAACCAAAACATAAATGATC
TTGATTACCCATTACAAGCTAGTAAGGGGACCTCATGGACCTACAGATCAGAAGCAACAATGATTCGAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTTCCAGCTCTTCAGGTCATTCGGTGTGCCTCAACCAAGGGGTTGTTTGTTTCATGGGTTTGGATTGGATTGGATTGGAATGGAAATGGATCACCATGTTTGGAA
GCCCTGGAATGAGATGGGTTTGGAATTGGTTGGATTCCAATGGGGTTTCGCCCTCCACCTCTCAGATCTGAGGTATTTTCGCCGTTTTCGAATTATTTCGGCGGATTTGT
GTCGGTGGCGGTGTAATCCCTCTTATTCGCTCGGATCTAAGATGCTGTCGGCGAGACACCCTATCGCCGTTTGGCTTCGACGATCTGGCCGCTTGCTGCTTCGTTATCCC
CCTTCCTCTCTTTTGCCGCCCCGAAGATGGAGGACTGTCCCCCTTGCCGCTTCGAATCTCCTTTCGTCTCTTCGCCGCCTCGAAGATGGAGGACTATTCTCCATGGTCGT
TGGGGCTCGCATTTTCATTCTCAGATGCTACACAATCAGTCCACCATTCGACGAGACCCGGCAGGAGACTGGTTTGGGGATGATAAGCTTGGTAGGGAGGCCGGAACGAG
TGAAAAAACAGGCAATAACGTCATCAGACTTGGCGTTTCCCAAAGATTCAAAAAAATCCAGAAGCTCCATATTGGATGGTTGGAAGCTTGCGATTGCTAAGATCTTAAAT
AAGGAACCAAAATTGCTTTTCGATCTGCTTGAGGCAGTTCTAGAGAAGATCAAGACTCTAGAAGCCTTGGAATATGGGGTTAGATCACACCCAGGACAACAACGGATTCA
AATTCGTGATCATAGGGGGTTTAATAACAGTGCAGAACTGACATTTAAGCCCAAAATTGTTGTAGTGTCACTTTTTCCTAAATTTGTTTTTAACCAAAACATAAATGATC
TTGATTACCCATTACAAGCTAGTAAGGGGACCTCATGGACCTACAGATCAGAAGCAACAATGATTCGAGATTAA
Protein sequenceShow/hide protein sequence
MNFQLFRSFGVPQPRGCLFHGFGLDWIGMEMDHHVWKPWNEMGLELVGFQWGFALHLSDLRYFRRFRIISADLCRWRCNPSYSLGSKMLSARHPIAVWLRRSGRLLLRYP
PSSLLPPRRWRTVPLAASNLLSSLRRLEDGGLFSMVVGARIFILRCYTISPPFDETRQETGLGMISLVGRPERVKKQAITSSDLAFPKDSKKSRSSILDGWKLAIAKILN
KEPKLLFDLLEAVLEKIKTLEALEYGVRSHPGQQRIQIRDHRGFNNSAELTFKPKIVVVSLFPKFVFNQNINDLDYPLQASKGTSWTYRSEATMIRD