; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0027888 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027888
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr8:6750054..6752222
RNA-Seq ExpressionLag0027888
SyntenyLag0027888
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038880370.1 uncharacterized protein LOC120072018 [Benincasa hispida]2.6e-3254.55Show/hide
Query:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK
        MA  RY+IEKFDGK DF+L KAKIKA+L QQK L AI D  + P T+++ +K+ ++  AY T++LN+++++LRQ++DQ TAY +W KL+E+YL KDLPNK
Subjt:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK

Query:  ANLRERFFTYKMDPSKSMTDNRGDHRSVGVGF
        A  RERFFTYK+D +KS+TDN  + + +   F
Subjt:  ANLRERFFTYKMDPSKSMTDNRGDHRSVGVGF

XP_038885928.1 uncharacterized protein LOC120076236 [Benincasa hispida]6.2e-3456.06Show/hide
Query:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK
        M   RY+IEKF+ K DF+LWKAKIK +LR+QKAL AI D  + P  + + EK+ ++  AY T+VLN+ ++VLRQ++D+ TAY +W KL+++YL KDLPNK
Subjt:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK

Query:  ANLRERFFTYKMDPSKSMTDNRGDHRSVGVGF
        A LRERFFTYKMDP+KS+TDN  + +S+   F
Subjt:  ANLRERFFTYKMDPSKSMTDNRGDHRSVGVGF

XP_038887098.1 uncharacterized protein LOC120077280 [Benincasa hispida]1.2e-3255.3Show/hide
Query:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK
        MA  +Y+IEKFD K DF+L KAKIKA+L QQKAL AI D  + P T+++ EK+ ++  AY T++LN++++VLRQ++DQ T Y +W KL+E+YL KD PNK
Subjt:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK

Query:  ANLRERFFTYKMDPSKSMTDNRGDHRSVGVGF
          LRERFFTYKMDP+KS+TDN  + + +   F
Subjt:  ANLRERFFTYKMDPSKSMTDNRGDHRSVGVGF

XP_038889933.1 uncharacterized protein LOC120079695 [Benincasa hispida]1.2e-3256.06Show/hide
Query:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK
        M   R++IEKFDGK DF+LWKAKIKA+L QQKAL AI DL + P T T  EK+ ++  AY T+VLN+++NVLRQ++D+ TA+ +W KL+E+YL KDL NK
Subjt:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK

Query:  ANLRERFFTYKMDPSKSMTDNRGDHRSVGVGF
        A  R+RFFTYKMD +KS+T+N  + + + + F
Subjt:  ANLRERFFTYKMDPSKSMTDNRGDHRSVGVGF

XP_038890043.1 uncharacterized protein LOC120079747 [Benincasa hispida]2.6e-3255.71Show/hide
Query:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK
        MA  RY+IEKFD K DF+LWK KIK +L QQKAL AI D  + P T+T+ EK+ ++  A  T+VLN+++NVLRQV++Q TAY +W KL+E+YL KDL NK
Subjt:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK

Query:  ANLRERFFTYKMDPSKSMTD-------NRGDHRSVGVGFG
        A LRERFFTYKMD +KS+TD          + RS+G   G
Subjt:  ANLRERFFTYKMDPSKSMTD-------NRGDHRSVGVGFG

TrEMBL top hitse value%identityAlignment
A0A2P5CTT8 Uncharacterized protein4.2e-2851.54Show/hide
Query:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK
        M  ++ +IEKFDGK DF++WK K+KA+L QQK  K + D   LP TM   EK+ + + AY  L+LNL++NVLRQV +QDTA K+W KL  LYLTK L NK
Subjt:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK

Query:  ANLRERFFTYKMDPSKSMTDNRGDHRSVGV
          L+E+ F +KMD +KS+ DN  D + + V
Subjt:  ANLRERFFTYKMDPSKSMTDNRGDHRSVGV

A0A2P5FE65 Uncharacterized protein (Fragment)8.5e-2952.31Show/hide
Query:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK
        M  ++ +IEKFDGK DF++WK K+KA+L QQK  KA+ D+  LP TM   EK+ + + AY  L+LNL++NVLRQV +QDTA K+W KL  LYLTK L NK
Subjt:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK

Query:  ANLRERFFTYKMDPSKSMTDNRGDHRSVGV
          L+E+ F +KMD +KS+ DN  D + + V
Subjt:  ANLRERFFTYKMDPSKSMTDNRGDHRSVGV

A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-2645.31Show/hide
Query:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK
        M   +++IEKFDG  DF LW  +I AIL  QKALKA++D KELP T+T+ E++ +++ AY TL++N+++NVLRQV+++ TA+  W KL  LY  KDLPNK
Subjt:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK

Query:  ANLRERFFTYKMDPSKSMTDNRGDHRSV
          ++E+ F++K + +K++ +N  + + +
Subjt:  ANLRERFFTYKMDPSKSMTDNRGDHRSV

A0A5C7GV29 Uncharacterized protein2.1e-2747.69Show/hide
Query:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK
        M   ++ IEKF+GK DF +W+ K+KAIL QQK +KA+++ K+LP +++ EEK ++ + AY T++LNL++NVLRQV D+DTA K+W+KL   Y+ K L  K
Subjt:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK

Query:  ANLRERFFTYKMDPSKSMTDNRGDHRSVGV
          L+E+ F +KMD SKS+ DN  D   + +
Subjt:  ANLRERFFTYKMDPSKSMTDNRGDHRSVGV

A0A5C7HNJ4 Uncharacterized protein1.0e-2648.46Show/hide
Query:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK
        M +AR++IEKF+ K DF +W+  +KAIL QQK +K ++  K+LP T++ EEK ++ + AY T+VLNL++NVLRQV D+DTA K+W+KL  LY+ K L  K
Subjt:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK

Query:  ANLRERFFTYKMDPSKSMTDNRGDHRSVGV
          L+E+ F +KMD SK + DN  D   + +
Subjt:  ANLRERFFTYKMDPSKSMTDNRGDHRSVGV

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.0e-1131.25Show/hide
Query:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK
        M+  +Y++ KF+G   F  W+ +++ +L QQ   K +    + P TM  E+  ++ + A   + L+LS++V+  ++D+DTA  IW +L  LY++K L NK
Subjt:  MAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTTMTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNK

Query:  ANLRERFFTYKM
          L+++ +   M
Subjt:  ANLRERFFTYKM

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTTAAGTCAGCAGAGTGGATATTCATTGCTGCCAGACCGTGCTTCGCCACAAGTTCTGATTGGAAGAGGAAGACGAAGCCTGCTGCATCTCACCAGAGGTTGAT
CGCGATTCGTTGCGAGTTCCGCAAGCCTGCAATGGCCTCTACAGTTCGCGTGGAACTCGAGAAAAATCAAGAAACTGAAGAAATGGCAGTAGCAAGGTATGACATTGAGA
AATTTGATGGCAAGAGAGATTTTGATCTGTGGAAAGCAAAGATCAAAGCCATTCTTAGACAGCAAAAGGCGTTAAAGGCTATTCAAGACCTAAAAGAACTCCCAACCACG
ATGACTCAAGAAGAAAAAGACAATATGCAAAAAGCGGCATATAGAACATTGGTTTTGAACCTTAGCAACAATGTTCTTAGACAAGTGTTGGATCAAGACACTGCCTACAA
GATATGGATGAAGCTACATGAGTTATATCTCACTAAAGATCTTCCCAACAAAGCAAATTTGAGGGAAAGATTTTTTACATACAAGATGGATCCAAGTAAGTCTATGACTG
ATAATAGGGGTGATCATCGGTCGGTCGGCGTCGGTTTTGGGCTCAAACCGACGCCGACCACCGACAAGTCGGTTCTGTTCGGTCGGCGATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTTAAGTCAGCAGAGTGGATATTCATTGCTGCCAGACCGTGCTTCGCCACAAGTTCTGATTGGAAGAGGAAGACGAAGCCTGCTGCATCTCACCAGAGGTTGAT
CGCGATTCGTTGCGAGTTCCGCAAGCCTGCAATGGCCTCTACAGTTCGCGTGGAACTCGAGAAAAATCAAGAAACTGAAGAAATGGCAGTAGCAAGGTATGACATTGAGA
AATTTGATGGCAAGAGAGATTTTGATCTGTGGAAAGCAAAGATCAAAGCCATTCTTAGACAGCAAAAGGCGTTAAAGGCTATTCAAGACCTAAAAGAACTCCCAACCACG
ATGACTCAAGAAGAAAAAGACAATATGCAAAAAGCGGCATATAGAACATTGGTTTTGAACCTTAGCAACAATGTTCTTAGACAAGTGTTGGATCAAGACACTGCCTACAA
GATATGGATGAAGCTACATGAGTTATATCTCACTAAAGATCTTCCCAACAAAGCAAATTTGAGGGAAAGATTTTTTACATACAAGATGGATCCAAGTAAGTCTATGACTG
ATAATAGGGGTGATCATCGGTCGGTCGGCGTCGGTTTTGGGCTCAAACCGACGCCGACCACCGACAAGTCGGTTCTGTTCGGTCGGCGATAG
Protein sequenceShow/hide protein sequence
MKLKSAEWIFIAARPCFATSSDWKRKTKPAASHQRLIAIRCEFRKPAMASTVRVELEKNQETEEMAVARYDIEKFDGKRDFDLWKAKIKAILRQQKALKAIQDLKELPTT
MTQEEKDNMQKAAYRTLVLNLSNNVLRQVLDQDTAYKIWMKLHELYLTKDLPNKANLRERFFTYKMDPSKSMTDNRGDHRSVGVGFGLKPTPTTDKSVLFGRR