; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0027890 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027890
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr8:6768857..6772776
RNA-Seq ExpressionLag0027890
SyntenyLag0027890
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4279811.1 unnamed protein product [Prunus armeniaca]1.9e-1028.44Show/hide
Query:  WKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGGAWSQPNTYSGGEELSKATIILWVLWNSRNNCRNSNQ----------QLDINQV
        WKS+W L + P+ +  + K   N +    N+   GI     C LCG      +     E L K        +    +C +  Q          +  +NQV
Subjt:  WKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGGAWSQPNTYSGGEELSKATIILWVLWNSRNNCRNSNQ----------QLDINQV

Query:  SRLLTNYIEE---LEDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRDSAGSLIGAGCSRVSRYWPIKALEVKVLPEEEED
            T  +     + +  RP    PE+Q++ ++ SW+    G  K+N DA+W S    GGVGWV+RDS G ++ AGC    R     A+E K + E    
Subjt:  SRLLTNYIEE---LEDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRDSAGSLIGAGCSRVSRYWPIKALEVKVLPEEEED

Query:  YSDSGLIFAEI
           SGL   E+
Subjt:  YSDSGLIFAEI

OMO85295.1 reverse transcriptase [Corchorus capsularis]1.5e-1027.83Show/hide
Query:  GQAEAPWKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGG---------------------------------AWSQPNTYSGGEEL
        GQ +  WK +WSL   P+ K  + ++I   +PT S +  RG   NL C  C                                    W + N        
Subjt:  GQAEAPWKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGG---------------------------------AWSQPNTYSGGEEL

Query:  SKA-------TIILWVLWNSRNNCRNSNQQLDINQVSRLLTNYIEELEDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRD
        + +       T +LW +W  RN     N ++  N VSR     +E      R       VQS  + +SWKPPD+GW+K+N D S      + G G ++RD
Subjt:  SKA-------TIILWVLWNSRNNCRNSNQQLDINQVSRLLTNYIEELEDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRD

Query:  SAGSLIGAGCSR
          G+ I AG SR
Subjt:  SAGSLIGAGCSR

XP_018436177.1 PREDICTED: uncharacterized protein LOC108808549 [Raphanus sativus]4.6e-1226.17Show/hide
Query:  EAPWKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGGA-----------------WSQPNTYS-----GGEEL--------------
        +A ++ +WSLNI P+ K  + + +NNA+P   N+A R I+ +  C  CG A                 W++ N ++       E L              
Subjt:  EAPWKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGGA-----------------WSQPNTYS-----GGEEL--------------

Query:  -------SKATIILWVLWNSRNNCRNSNQQLDINQVSRLLTNYIEELEDKNRPYLD-FPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIR
               S A  ILW LW +RN      ++ +I++        ++E +DK    ++   +  ++     W PP   W K N+D SW     +GG GW+ R
Subjt:  -------SKATIILWVLWNSRNNCRNSNQQLDINQVSRLLTNYIEELEDKNRPYLD-FPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIR

Query:  DSAGSLIGAGCSRV
        D   SL+ AG  ++
Subjt:  DSAGSLIGAGCSRV

XP_023880772.1 uncharacterized protein LOC111993138 [Quercus suber]1.3e-1126.48Show/hide
Query:  LWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGGAWSQPNTYSG--------GEELSKATII----------------------------
        +W+LN   + K  + +   N +PT   +  RG+  ++GC  CG      +   G        GE   K  +I                            
Subjt:  LWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGGAWSQPNTYSG--------GEELSKATII----------------------------

Query:  -LWVLWNSRNNCRNSNQQLDINQVSRLLTNYIEELEDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRDSAGSLIGAGCSR
         +W LWN RN  R   Q+   ++++R +  Y+ E   +N P    P   S+P   +W PP +GW+K N D + S      G+G VIR++ G ++GA   R
Subjt:  -LWVLWNSRNNCRNSNQQLDINQVSRLLTNYIEELEDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRDSAGSLIGAGCSR

Query:  VSRYWPIKALEVKVLPEEE
        +    P+KALE + +  +E
Subjt:  VSRYWPIKALEVKVLPEEE

XP_030924745.1 uncharacterized protein LOC115951731 [Quercus lobata]1.3e-1130.32Show/hide
Query:  SVTTDKDKASPSNCGQAEAPWKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGG----------------------AWSQP--NTYS
        + T     +SP N  Q    W+ LW L +  + K    +  N+A+PT SN+  R I+TN  C  C                        +WSQP  N+++
Subjt:  SVTTDKDKASPSNCGQAEAPWKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGG----------------------AWSQP--NTYS

Query:  GG-----------EELSKATI---ILWVLWNSRNNCRNSNQQLDINQVSRLLTNYIEELEDKNRPYLD-FPEVQSQPSLLSWKPPDEGWWKLNSDASWSS
                     +E  ++ I   I W+LWN RN  R +     IN +S L  +Y++E  D     LD  P V   PS   W+PPDE  +K N DA+   
Subjt:  GG-----------EELSKATI---ILWVLWNSRNNCRNSNQQLDINQVSRLLTNYIEELEDKNRPYLD-FPEVQSQPSLLSWKPPDEGWWKLNSDASWSS

Query:  AAMRGGVGWVIRDSAGSLIGA
         +   G+G +IRD  G  +GA
Subjt:  AAMRGGVGWVIRDSAGSLIGA

TrEMBL top hitse value%identityAlignment
A0A1R3IRS5 Reverse transcriptase7.2e-1127.83Show/hide
Query:  GQAEAPWKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGG---------------------------------AWSQPNTYSGGEEL
        GQ +  WK +WSL   P+ K  + ++I   +PT S +  RG   NL C  C                                    W + N        
Subjt:  GQAEAPWKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGG---------------------------------AWSQPNTYSGGEEL

Query:  SKA-------TIILWVLWNSRNNCRNSNQQLDINQVSRLLTNYIEELEDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRD
        + +       T +LW +W  RN     N ++  N VSR     +E      R       VQS  + +SWKPPD+GW+K+N D S      + G G ++RD
Subjt:  SKA-------TIILWVLWNSRNNCRNSNQQLDINQVSRLLTNYIEELEDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRD

Query:  SAGSLIGAGCSR
          G+ I AG SR
Subjt:  SAGSLIGAGCSR

A0A2N9H1N4 RNase H domain-containing protein5.5e-1124.03Show/hide
Query:  KDKASPSNCGQAEAPWKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGG----------------------AWSQ---PNTYS----
        ++++ PS+  Q    WKS+WSLN+ P+ +  + +  +N++PT SN+  R I  +  C +C                        +W Q    +TY+    
Subjt:  KDKASPSNCGQAEAPWKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGG----------------------AWSQ---PNTYS----

Query:  ---------GGEELSKATIILWVLWNSRNNCR---NSNQQLDINQVSRLLTNYIEELEDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAM
                    EL   ++I W +W  RN  R   + +  L + Q +R   +  +E +D+ +     P+  S  + + W PP +G +K+N D +  S + 
Subjt:  ---------GGEELSKATIILWVLWNSRNNCR---NSNQQLDINQVSRLLTNYIEELEDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAM

Query:  RGGVGWVIRDSAGSLIGAGCSRVSRYWPIKALE
          G+G +IR+  G ++G+   R      ++A+E
Subjt:  RGGVGWVIRDSAGSLIGAGCSRVSRYWPIKALE

A0A6J0JKM2 uncharacterized protein LOC1088085492.2e-1226.17Show/hide
Query:  EAPWKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGGA-----------------WSQPNTYS-----GGEEL--------------
        +A ++ +WSLNI P+ K  + + +NNA+P   N+A R I+ +  C  CG A                 W++ N ++       E L              
Subjt:  EAPWKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGGA-----------------WSQPNTYS-----GGEEL--------------

Query:  -------SKATIILWVLWNSRNNCRNSNQQLDINQVSRLLTNYIEELEDKNRPYLD-FPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIR
               S A  ILW LW +RN      ++ +I++        ++E +DK    ++   +  ++     W PP   W K N+D SW     +GG GW+ R
Subjt:  -------SKATIILWVLWNSRNNCRNSNQQLDINQVSRLLTNYIEELEDKNRPYLD-FPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIR

Query:  DSAGSLIGAGCSRV
        D   SL+ AG  ++
Subjt:  DSAGSLIGAGCSRV

A0A6J5UV01 Reverse transcriptase domain-containing protein9.4e-1128.44Show/hide
Query:  WKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGGAWSQPNTYSGGEELSKATIILWVLWNSRNNCRNSNQ----------QLDINQV
        WKS+W L + P+ +  + K   N +    N+   GI     C LCG      +     E L K        +    +C +  Q          +  +NQV
Subjt:  WKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGGAWSQPNTYSGGEELSKATIILWVLWNSRNNCRNSNQ----------QLDINQV

Query:  SRLLTNYIEE---LEDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRDSAGSLIGAGCSRVSRYWPIKALEVKVLPEEEED
            T  +     + +  RP    PE+Q++ ++ SW+    G  K+N DA+W S    GGVGWV+RDS G ++ AGC    R     A+E K + E    
Subjt:  SRLLTNYIEE---LEDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRDSAGSLIGAGCSRVSRYWPIKALEVKVLPEEEED

Query:  YSDSGLIFAEI
           SGL   E+
Subjt:  YSDSGLIFAEI

A0A803PA46 Uncharacterized protein1.9e-1127.14Show/hide
Query:  SVTTDKDKASPSNCGQAEAPWKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGGAWSQPNTYSGGEELSKAT---------IILWVL
        S T+  D  SPS+       WK+LW L++ P+ K  + +   N +PT  N+A+R I  N  C  C     Q  T S      +            I W++
Subjt:  SVTTDKDKASPSNCGQAEAPWKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGGAWSQPNTYSGGEELSKAT---------IILWVL

Query:  WNSRNNCRNSNQQLDINQVSRLLTNYIEELEDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRDSAGSLIGAGCSRVSRYW
        W++RN    +  Q   + +  L  +++ E +  ++       V   P +  W+PP  G  KLN+DA+    + + G G VIR+S G ++ A  +      
Subjt:  WNSRNNCRNSNQQLDINQVSRLLTNYIEELEDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRDSAGSLIGAGCSRVSRYW

Query:  PIKALEVKVL
         +  LE K L
Subjt:  PIKALEVKVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-0829.06Show/hide
Query:  ILWVLWNSRNNCRNSNQQLDINQVSRLLTNYIEELEDKN--RPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRDSAGSLIGAGC
        +LW LW SRN      ++ D  +V R      EE   +         P+V+   S + WK P   W K N+DA+W     R G+GW++R+ +G ++  G 
Subjt:  ILWVLWNSRNNCRNSNQQLDINQVSRLLTNYIEELEDKN--RPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRDSAGSLIGAGC

Query:  SRVSRYWPIKALEVKVL
          + R   +   E++ L
Subjt:  SRVSRYWPIKALEVKVL

AT4G09775.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1)1.7e-0427.05Show/hide
Query:  LWVLWNSRNNCRNSNQQLD------INQVSRLLTNYIEEL--EDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRDSAGSL
        +W LW SRN      QQ+D        +  +  T ++E    +  N    + P  +       W PP EG+ K N D+ +          W+IRDS G +
Subjt:  LWVLWNSRNNCRNSNQQLD------INQVSRLLTNYIEEL--EDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRDSAGSL

Query:  IGAGCSRVSRYWPIKALEVKVL
        I +GC+++ + +   AL+ + L
Subjt:  IGAGCSRVSRYWPIKALEVKVL

AT4G29090.1 Ribonuclease H-like superfamily protein3.5e-1021.24Show/hide
Query:  WKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLC------------------------------GGAWSQP---------NTYSGGEEL
        ++ +W     P+ +  + K ++N++P    +A R +S    C  C                              GG W+           N  +G  + 
Subjt:  WKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLC------------------------------GGAWSQP---------NTYSGGEEL

Query:  SKAT----IILWVLWNSRNNCRNSNQQLDINQVSRLLTNYIEE--LEDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRDS
         KA+     +LW LW +RN      ++ +  +V R   + +EE  +  +       P+V ++ S   W+PP   W K N+DA+W+    R G+GWV+R+ 
Subjt:  SKAT----IILWVLWNSRNNCRNSNQQLDINQVSRLLTNYIEE--LEDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRDS

Query:  AGSLIGAGCSRVSRYWPIKALEVKVL
         G +   G   + +   +   E++ +
Subjt:  AGSLIGAGCSRVSRYWPIKALEVKVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTATTTGGAATCCGGAAGCCAAAGGGAATTTCACCGTTAGAAGTGCCTACAATCTCGCCGTTAACATCAGTGACAACTGACAAGGACAAAGCATCCCCTTCGAA
TTGTGGCCAAGCAGAAGCCCCTTGGAAATCTCTTTGGAGCTTGAACATTTTCCCCAGAGCCAAAATATCTATGTTGAAGATTATAAACAATGCTATTCCCACAAATTCAA
ATATTGCTATAAGAGGGATTTCTACTAATTTGGGATGTTTTCTGTGCGGGGGAGCGTGGAGTCAACCAAACACTTATTCTGGGGGTGAGGAGCTGAGCAAAGCGACTATC
ATCTTATGGGTGCTATGGAATTCAAGAAACAATTGCAGAAATTCAAACCAACAGCTAGACATTAATCAGGTTTCCAGATTGTTGACAAATTATATTGAGGAACTTGAAGA
TAAGAACAGACCATACTTGGATTTTCCAGAGGTACAGAGCCAGCCGAGTCTCCTGTCATGGAAGCCACCGGATGAAGGCTGGTGGAAGCTCAACTCAGACGCCTCGTGGA
GCAGCGCTGCGATGAGGGGCGGGGTGGGCTGGGTGATTCGTGACTCTGCCGGATCTTTAATCGGAGCAGGTTGCAGTCGTGTTTCTCGCTATTGGCCAATAAAGGCCCTT
GAAGTCAAAGTGCTCCCGGAAGAGGAAGAAGACTATTCGGATTCAGGCCTGATTTTCGCCGAAATTTTGGAGATGGCTAAGGAAAAGAAGATCGAATTCGTTTATTCTAT
CACCGCTGGATTGGATCATGCCGTTTCATTTCAGTTCTTGAGGCTTTATATTGATGGGAAGCTTTTTTCAGATCGTTGGAAGAGAATGGCTTTCGAAGAAATGCTAGAAA
ATTGGGAAAAGTTTAATCTGACTGCTGAGGAAGAGTCTACGGAAGTAGATGTTGATCGTCGAGCAGTTGTAGTTACAAGTCAGTCTCTCGGTTTCAATCTTATTGGAAAG
CTTTTGGCGCCGAGGACCATGGCTTTTCGACAAGAAGTTCTTGCTGGTTCTTTCCAAGCCAATCCCGATGGTGAAACCGACTGCAATCGAGTTGATGCGGCGGTGGTTGG
ACACGATCTCCAGCGACATGGTGGTGGTGCTGTGGCTGATCTGGGAGAAGACGAGAGGGAGATCAAGAGGAAGGGAGAGAGGCACGCGAGGGAAAATAGTCTGAGGGTTT
TTGAGAAAAAGAGGCGGGGGAGGGAGGAGGAGCTCACTCCTCCCCGTTTCGACGCCGGAACGAGGAGGAGGGAGCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAATTATTTGGAATCCGGAAGCCAAAGGGAATTTCACCGTTAGAAGTGCCTACAATCTCGCCGTTAACATCAGTGACAACTGACAAGGACAAAGCATCCCCTTCGAA
TTGTGGCCAAGCAGAAGCCCCTTGGAAATCTCTTTGGAGCTTGAACATTTTCCCCAGAGCCAAAATATCTATGTTGAAGATTATAAACAATGCTATTCCCACAAATTCAA
ATATTGCTATAAGAGGGATTTCTACTAATTTGGGATGTTTTCTGTGCGGGGGAGCGTGGAGTCAACCAAACACTTATTCTGGGGGTGAGGAGCTGAGCAAAGCGACTATC
ATCTTATGGGTGCTATGGAATTCAAGAAACAATTGCAGAAATTCAAACCAACAGCTAGACATTAATCAGGTTTCCAGATTGTTGACAAATTATATTGAGGAACTTGAAGA
TAAGAACAGACCATACTTGGATTTTCCAGAGGTACAGAGCCAGCCGAGTCTCCTGTCATGGAAGCCACCGGATGAAGGCTGGTGGAAGCTCAACTCAGACGCCTCGTGGA
GCAGCGCTGCGATGAGGGGCGGGGTGGGCTGGGTGATTCGTGACTCTGCCGGATCTTTAATCGGAGCAGGTTGCAGTCGTGTTTCTCGCTATTGGCCAATAAAGGCCCTT
GAAGTCAAAGTGCTCCCGGAAGAGGAAGAAGACTATTCGGATTCAGGCCTGATTTTCGCCGAAATTTTGGAGATGGCTAAGGAAAAGAAGATCGAATTCGTTTATTCTAT
CACCGCTGGATTGGATCATGCCGTTTCATTTCAGTTCTTGAGGCTTTATATTGATGGGAAGCTTTTTTCAGATCGTTGGAAGAGAATGGCTTTCGAAGAAATGCTAGAAA
ATTGGGAAAAGTTTAATCTGACTGCTGAGGAAGAGTCTACGGAAGTAGATGTTGATCGTCGAGCAGTTGTAGTTACAAGTCAGTCTCTCGGTTTCAATCTTATTGGAAAG
CTTTTGGCGCCGAGGACCATGGCTTTTCGACAAGAAGTTCTTGCTGGTTCTTTCCAAGCCAATCCCGATGGTGAAACCGACTGCAATCGAGTTGATGCGGCGGTGGTTGG
ACACGATCTCCAGCGACATGGTGGTGGTGCTGTGGCTGATCTGGGAGAAGACGAGAGGGAGATCAAGAGGAAGGGAGAGAGGCACGCGAGGGAAAATAGTCTGAGGGTTT
TTGAGAAAAAGAGGCGGGGGAGGGAGGAGGAGCTCACTCCTCCCCGTTTCGACGCCGGAACGAGGAGGAGGGAGCTTTAG
Protein sequenceShow/hide protein sequence
MKLFGIRKPKGISPLEVPTISPLTSVTTDKDKASPSNCGQAEAPWKSLWSLNIFPRAKISMLKIINNAIPTNSNIAIRGISTNLGCFLCGGAWSQPNTYSGGEELSKATI
ILWVLWNSRNNCRNSNQQLDINQVSRLLTNYIEELEDKNRPYLDFPEVQSQPSLLSWKPPDEGWWKLNSDASWSSAAMRGGVGWVIRDSAGSLIGAGCSRVSRYWPIKAL
EVKVLPEEEEDYSDSGLIFAEILEMAKEKKIEFVYSITAGLDHAVSFQFLRLYIDGKLFSDRWKRMAFEEMLENWEKFNLTAEEESTEVDVDRRAVVVTSQSLGFNLIGK
LLAPRTMAFRQEVLAGSFQANPDGETDCNRVDAAVVGHDLQRHGGGAVADLGEDEREIKRKGERHARENSLRVFEKKRRGREEELTPPRFDAGTRRREL