; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0027936 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027936
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr8:8183134..8184082
RNA-Seq ExpressionLag0027936
SyntenyLag0027936
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]7.2e-4039.68Show/hide
Query:  EATRCRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEER
        EA RCR F+ TL   AR WF ++ + SI SFK LARAFVTQF+G + R +P   LLT+KQ   ESL+DY+ RF+ E + VEG  D V+L A +SG+++E 
Subjt:  EATRCRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEER

Query:  LLNSISESQPRTYVEFMTRAQRYISAEELLRSKQEEREAETDTSSPRPMAEADQRPGSLGVVRNQKS---------------------------------
        L  S  +  P T+ E ++RAQRY+SA E   SK+E     TD   P+     D+  GS    R++ S                                 
Subjt:  LLNSISESQPRTYVEFMTRAQRYISAEELLRSKQEEREAETDTSSPRPMAEADQRPGSLGVVRNQKS---------------------------------

Query:  -EKLRSDPDRRNQNKYCMFHGDHGHTTRECIQLRDEIEAQIREGYLKEFVGE
         E++++   +R++ +YC+FH DHGH T++C  L++E+E  IR GYLKE+V E
Subjt:  -EKLRSDPDRRNQNKYCMFHGDHGHTTRECIQLRDEIEAQIREGYLKEFVGE

XP_024024428.1 uncharacterized protein LOC112092448 [Morus notabilis]3.1e-3541.48Show/hide
Query:  EATRCRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEE-
        E   CR F   L+  AR+WF  +   SI S+ +L   F+TQF+G +    P+ NL  V QGP ESLKD+I RF  +V   EG  D VAL   +S ++++ 
Subjt:  EATRCRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEE-

Query:  RLLNSISESQPRTYVEFMTRAQRYISAEELLR---------SKQEEREAETDTSSPR----PMAEADQRPGSLGVVRNQKSEKLRSDPDRRNQNKYCMFH
             +    P  Y EF+TRAQ +I+AEE  +         +K+E R+A +  +  +    P  +A+  P  L V+R  +   L+SDP RRNQNKYC FH
Subjt:  RLLNSISESQPRTYVEFMTRAQRYISAEELLR---------SKQEEREAETDTSSPR----PMAEADQRPGSLGVVRNQKSEKLRSDPDRRNQNKYCMFH

Query:  GDHGHTTRECIQLRDEIEAQIREGYLKEF
        G+ GHTT EC  LRDE+E  IREG L E+
Subjt:  GDHGHTTRECIQLRDEIEAQIREGYLKEF

XP_024041095.1 uncharacterized protein LOC112098853 [Citrus clementina]1.8e-3836.4Show/hide
Query:  EATRCRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEER
        +A  CR F LTL   AR+WF ++   SI SF +L+R F + F  A+ R KP   LLTVKQ   E+L+DYI R++NE+  V+GYDDG+AL+ ++ GL+  +
Subjt:  EATRCRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEER

Query:  LLNSISESQPRTYVEFMTRAQRYISAEELLRSKQEEREAET------DTSSPRPMAEADQ-------RPGSLGVVRNQKSE-------------------
        L  S+S+  P +Y E + RA++Y +AEE  +++ +E+   T      D    R +   DQ       RPG    VR+ +                     
Subjt:  LLNSISESQPRTYVEFMTRAQRYISAEELLRSKQEEREAET------DTSSPRPMAEADQ-------RPGSLGVVRNQKSE-------------------

Query:  -------------KLRSDPDRRNQNKYCMFHGDHGHTTRECIQLRDEIEAQIREGYLKEFV
                      ++++P RRN NKYC FH DHGH T EC +L+++IE+ +R+G L+E+V
Subjt:  -------------KLRSDPDRRNQNKYCMFHGDHGHTTRECIQLRDEIEAQIREGYLKEFV

XP_030930616.1 uncharacterized protein LOC115956348 [Quercus lobata]5.4e-3535.86Show/hide
Query:  CRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEERLLNS
        CR F  TL  LAR WFSKIP  S+ SF+EL++ FV  F+G Q  +    +LLT++QG  ESL+ +I RF+ E + V+  DD + L A  +G+  +  ++ 
Subjt:  CRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEERLLNS

Query:  ISESQPRTYVEFMTRAQRYISAEELLRSKQEEREAETDTSSPRPMAEAD---------------QRPGSLGVVRNQK-----------------------
        + E +P++  E +  AQ +++AE+ +  K+ +R    DT+  R + +                 ++PGS    RNQ+                       
Subjt:  ISESQPRTYVEFMTRAQRYISAEELLRSKQEEREAETDTSSPRPMAEAD---------------QRPGSLGVVRNQK-----------------------

Query:  SEKLRSDPDRRNQNKYCMFHGDHGHTTRECIQLRDEIEAQIREGYLKEFVG
         EK+R DP++RN+NKYC FH DHGH T EC  L+ +IE  IR+G LK F+G
Subjt:  SEKLRSDPDRRNQNKYCMFHGDHGHTTRECIQLRDEIEAQIREGYLKEFVG

XP_030958631.1 uncharacterized protein LOC115980538 [Quercus lobata]1.2e-3436.14Show/hide
Query:  CRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEERLLNS
        CR F  TL   AR WFSKIP  S+ +F+EL++ FV  F+G Q  ++   +LLT++QG  ESL+ +I RF+ E + V+  DD + L A  +G+  +  ++ 
Subjt:  CRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEERLLNS

Query:  ISESQPRTYVEFMTRAQRYISAEELLRSKQEER-------EAETDTSSPRP-------MAEAD-QRPGSLGVVRN---------------------QKSE
        + E +P+T  E +  AQ +++AE+ + +K+ +R        A     +PRP         E D ++ G LG  +N                     +  E
Subjt:  ISESQPRTYVEFMTRAQRYISAEELLRSKQEER-------EAETDTSSPRP-------MAEAD-QRPGSLGVVRN---------------------QKSE

Query:  KLRSDPDRRNQNKYCMFHGDHGHTTRECIQLRDEIEAQIREGYLKEFVG
        K++ DP++RN+NKYC FH DHGH T EC  L+ +IE  IR+G LK FVG
Subjt:  KLRSDPDRRNQNKYCMFHGDHGHTTRECIQLRDEIEAQIREGYLKEFVG

TrEMBL top hitse value%identityAlignment
A0A2N9GEW2 Uncharacterized protein1.4e-3337.44Show/hide
Query:  EATRCRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEER
        E   CR F L L   AR WF+K+  +SIGSF +L+RAF+  F+G+Q R +P  +LL+VKQ   ESL+ +++RF+ E + ++   + V +TA ++GL++  
Subjt:  EATRCRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEER

Query:  LLNSISESQPRTYVEFMTRAQRYISAEELLRSKQE---EREAETDTSSPRPMAEADQRPGSLGVVRNQKSEKLRSDPDRRNQNKYCMFHGDHGHTTRECI
         L  + +  P T  E M  A ++++AE+ L + ++   +R  E +   P P  +  Q   SL     +   K+RSDP+ R +N YC FH DHGH T EC+
Subjt:  LLNSISESQPRTYVEFMTRAQRYISAEELLRSKQE---EREAETDTSSPRPMAEADQRPGSLGVVRNQKSEKLRSDPDRRNQNKYCMFHGDHGHTTRECI

Query:  QLRDEIEAQIREGYLKEFV
         L+++IE  I++G L+++V
Subjt:  QLRDEIEAQIREGYLKEFV

A0A2N9GS26 Ribonuclease H3.2e-3336.32Show/hide
Query:  EATRCRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEER
        E   CR F L L   AR WF+K+  +SIGSF +L+RAF+  F+G+Q R +P  +LL+VKQ   ESL+ +++RF+ E + ++   + V +TA ++GL++  
Subjt:  EATRCRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEER

Query:  LLNSISESQPRTYVEFMTRAQRYISAEELLRSKQE---EREAETDTSSPRPM----AEADQRPGSLGVVRNQKSEKLRSDPDRRNQNKYCMFHGDHGHTT
         L  + +  P T  E M  A ++++AE+ L +  +   +R  E +   P       +E  + PG+     ++   K+RSDP+ R +N YC FH DHGH T
Subjt:  LLNSISESQPRTYVEFMTRAQRYISAEELLRSKQE---EREAETDTSSPRPM----AEADQRPGSLGVVRNQKSEKLRSDPDRRNQNKYCMFHGDHGHTT

Query:  RECIQLRDEIEAQIREGYLKEFV
         EC+ L++++E  IR+G L+++V
Subjt:  RECIQLRDEIEAQIREGYLKEFV

A0A2N9HV64 Ribonuclease H3.7e-3439.82Show/hide
Query:  CRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEERLLNS
        CR F  TL   AR WF K+   S+GSF +L+R+F   F+G Q   +P  +LL V+Q   E+L+ Y+ RF+ E + V+G DD V LTA ISGLQ    L S
Subjt:  CRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEERLLNS

Query:  ISESQPRTYVEFMTRAQRYISAEELL---------RSKQEEREAETDTSSPRPMAEADQRPGSLGVVRNQKSE-----KLRSDPDRRNQNKYCMFHGDHG
        + +  P +  E M  AQRY++ E+ L         R+   +R  ET  S P+   E+  R    G+  +Q        KL ++PDRR ++KYC FH DHG
Subjt:  ISESQPRTYVEFMTRAQRYISAEELL---------RSKQEEREAETDTSSPRPMAEADQRPGSLGVVRNQKSE-----KLRSDPDRRNQNKYCMFHGDHG

Query:  HTTRECIQLRDEIEAQIREGYLKEFV
        H T +C  L+ +IE  I++G L+ FV
Subjt:  HTTRECIQLRDEIEAQIREGYLKEFV

A0A2N9I2V6 Uncharacterized protein1.4e-3337.44Show/hide
Query:  EATRCRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEER
        E   CR F L L   AR WF+K+  +SIGSF +L+ AF+  F+G+Q R +P  +LL+VKQ   ESL+ +++RF+ E + ++   + V +TA ++GL++  
Subjt:  EATRCRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEER

Query:  LLNSISESQPRTYVEFMTRAQRYISAEELLRSKQE---EREAETDTSSPRPMAEADQRPGSLGVVRNQKSEKLRSDPDRRNQNKYCMFHGDHGHTTRECI
         L  + +  P T  E M  A ++++AE+ L +  +   +R  ET+   P P  +  Q   SL     +   K+RSDP+ R +N YC FH DHGH T+EC+
Subjt:  LLNSISESQPRTYVEFMTRAQRYISAEELLRSKQE---EREAETDTSSPRPMAEADQRPGSLGVVRNQKSEKLRSDPDRRNQNKYCMFHGDHGHTTRECI

Query:  QLRDEIEAQIREGYLKEFV
         L++++E  IR+G L+++V
Subjt:  QLRDEIEAQIREGYLKEFV

A0A6J1DWY0 uncharacterized protein LOC1110252933.5e-4039.68Show/hide
Query:  EATRCRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEER
        EA RCR F+ TL   AR WF ++ + SI SFK LARAFVTQF+G + R +P   LLT+KQ   ESL+DY+ RF+ E + VEG  D V+L A +SG+++E 
Subjt:  EATRCRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPRESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEER

Query:  LLNSISESQPRTYVEFMTRAQRYISAEELLRSKQEEREAETDTSSPRPMAEADQRPGSLGVVRNQKS---------------------------------
        L  S  +  P T+ E ++RAQRY+SA E   SK+E     TD   P+     D+  GS    R++ S                                 
Subjt:  LLNSISESQPRTYVEFMTRAQRYISAEELLRSKQEEREAETDTSSPRPMAEADQRPGSLGVVRNQKS---------------------------------

Query:  -EKLRSDPDRRNQNKYCMFHGDHGHTTRECIQLRDEIEAQIREGYLKEFVGE
         E++++   +R++ +YC+FH DHGH T++C  L++E+E  IR GYLKE+V E
Subjt:  -EKLRSDPDRRNQNKYCMFHGDHGHTTRECIQLRDEIEAQIREGYLKEFVGE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCCAGATCCGACATGAGCACTCCTCGACCGATGGCCGAGGCTGAGCAGAAGCTCAATCGCAAAAAGGCCCGCAGAAGCATAGCCGAGGCCGAGCAGGGCCAAAA
GGGGCGAGAACTATCCAAATGGCTAAAAGACGAAGCGACAAGGTGTCGACCCTTCACGCTAACACTCACAAGTTTGGCAAGGCAATGGTTTAGTAAGATTCCACAGAAGT
CAATCGGTTCGTTTAAGGAATTGGCCCGAGCGTTTGTTACGCAATTCCTAGGAGCCCAGAGCCGACAGAAGCCTCAGATCAACTTGCTGACAGTAAAGCAGGGGCCTCGA
GAAAGCTTGAAGGATTATATTAACAGATTTAGTAACGAAGTTGTTCCGGTAGAAGGCTATGACGATGGAGTTGCCTTGACTGCTGTGATTTCAGGTCTTCAGGAAGAAAG
ACTGCTCAACTCGATCAGTGAGAGCCAGCCACGAACATACGTGGAATTCATGACCCGAGCACAAAGGTACATAAGCGCTGAGGAACTGTTGAGGTCCAAACAAGAAGAGA
GAGAGGCCGAAACCGACACGAGCAGTCCTCGGCCAATGGCCGAGGCCGACCAGAGACCAGGGAGCCTCGGGGTCGTGCGGAACCAAAAGTCAGAAAAATTGAGGTCGGAC
CCAGATAGGAGGAATCAGAACAAGTACTGCATGTTCCATGGAGACCACGGTCACACAACCCGGGAATGCATACAGTTGAGGGACGAGATAGAAGCCCAAATCCGAGAGGG
TTACCTCAAGGAGTTTGTGGGGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCCAGATCCGACATGAGCACTCCTCGACCGATGGCCGAGGCTGAGCAGAAGCTCAATCGCAAAAAGGCCCGCAGAAGCATAGCCGAGGCCGAGCAGGGCCAAAA
GGGGCGAGAACTATCCAAATGGCTAAAAGACGAAGCGACAAGGTGTCGACCCTTCACGCTAACACTCACAAGTTTGGCAAGGCAATGGTTTAGTAAGATTCCACAGAAGT
CAATCGGTTCGTTTAAGGAATTGGCCCGAGCGTTTGTTACGCAATTCCTAGGAGCCCAGAGCCGACAGAAGCCTCAGATCAACTTGCTGACAGTAAAGCAGGGGCCTCGA
GAAAGCTTGAAGGATTATATTAACAGATTTAGTAACGAAGTTGTTCCGGTAGAAGGCTATGACGATGGAGTTGCCTTGACTGCTGTGATTTCAGGTCTTCAGGAAGAAAG
ACTGCTCAACTCGATCAGTGAGAGCCAGCCACGAACATACGTGGAATTCATGACCCGAGCACAAAGGTACATAAGCGCTGAGGAACTGTTGAGGTCCAAACAAGAAGAGA
GAGAGGCCGAAACCGACACGAGCAGTCCTCGGCCAATGGCCGAGGCCGACCAGAGACCAGGGAGCCTCGGGGTCGTGCGGAACCAAAAGTCAGAAAAATTGAGGTCGGAC
CCAGATAGGAGGAATCAGAACAAGTACTGCATGTTCCATGGAGACCACGGTCACACAACCCGGGAATGCATACAGTTGAGGGACGAGATAGAAGCCCAAATCCGAGAGGG
TTACCTCAAGGAGTTTGTGGGGGAATGA
Protein sequenceShow/hide protein sequence
MEARSDMSTPRPMAEAEQKLNRKKARRSIAEAEQGQKGRELSKWLKDEATRCRPFTLTLTSLARQWFSKIPQKSIGSFKELARAFVTQFLGAQSRQKPQINLLTVKQGPR
ESLKDYINRFSNEVVPVEGYDDGVALTAVISGLQEERLLNSISESQPRTYVEFMTRAQRYISAEELLRSKQEEREAETDTSSPRPMAEADQRPGSLGVVRNQKSEKLRSD
PDRRNQNKYCMFHGDHGHTTRECIQLRDEIEAQIREGYLKEFVGE