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Lag0027952 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027952
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr8:8532225..8532951
RNA-Seq ExpressionLag0027952
SyntenyLag0027952
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_030494802.1 uncharacterized protein LOC115710583 [Cannabis sativa]3.1e-1956.76Show/hide
Query:  AEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACM
        A AWL++ PP+S+T+WNDLAEKFL K+FP ++N K+R+EI+SF++S +E    AWERF+ ++RKC HHG+P C+
Subjt:  AEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACM

XP_030497803.1 uncharacterized protein LOC115713460 [Cannabis sativa]1.4e-1958.11Show/hide
Query:  AEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACM
        A AWL++ PP+S+T+WNDLAEKFL K+FP ++N K+R+EI+SF++S +E    AWERF+ L+RKC HHG+P C+
Subjt:  AEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACM

XP_030502440.1 uncharacterized protein LOC115717596 [Cannabis sativa]1.8e-1958.11Show/hide
Query:  AEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACM
        A AWL++ PPNS+T+WNDLAEKFL K+FP ++N K+R+EI+SF++  +E    AWERF+ L+RKC HHG+P C+
Subjt:  AEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACM

XP_030503898.1 uncharacterized protein LOC115719117 [Cannabis sativa]6.6e-2239.63Show/hide
Query:  KEYQLFELDPKIERTFCRRHREQRRKKREQQELSKG-QNGGRIPPAPPVPL------------MPQNENLISIAEE-------------DAEAWLDSFPP
        ++ +L  +DP+IERTF +R +EQ+ KK     ++ G + GG    A P+ L            +P    L  ++EE              A AWL++ PP
Subjt:  KEYQLFELDPKIERTFCRRHREQRRKKREQQELSKG-QNGGRIPPAPPVPL------------MPQNENLISIAEE-------------DAEAWLDSFPP

Query:  NSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACM
        +S+T+WNDLAEKFL K+FP ++N K+R+EI+SF++  +E    AWERF+ L+RKC HHG+P C+
Subjt:  NSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACM

XP_030509229.1 uncharacterized protein LOC115723907 [Cannabis sativa]6.2e-2056.58Show/hide
Query:  EDAEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACM
        + A AWL++ PPNS+T+WNDLAEKFL K+FP ++N K+R+EI+SF++S +E    AWERF+  +RKC HHG+P C+
Subjt:  EDAEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACM

TrEMBL top hitse value%identityAlignment
A0A392MI20 Retrotrans_gag domain-containing protein6.3e-1855.17Show/hide
Query:  AEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACMMC-----NLLTAS
        A++WL+S  PNSI++WN LAEKFL K FP  KN + R EIISFR++ +E L  AWERF+ L+RKC HHG+P+C+        LLT+S
Subjt:  AEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACMMC-----NLLTAS

A0A392QF53 Retrotrans_gag domain-containing protein (Fragment)6.9e-1756.76Show/hide
Query:  AEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACM
        A++WL+S  PNSI +WN LAEKFL K+FP  KN++ R EI SFR++ +E L  AWERF+ L+RKC  HG+P+C+
Subjt:  AEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACM

A0A392QG70 Retrotrans_gag domain-containing protein (Fragment)9.1e-1756.76Show/hide
Query:  AEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACM
        A++WL+S  PNSI +WN LAEKFL K+FP  KN + R EI SFR++ +E L  AWERF+ L+RKC  HG+P+C+
Subjt:  AEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACM

A0A6J1E1F3 uncharacterized protein LOC1110250655.3e-1753.95Show/hide
Query:  EDAEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACM
        ++A  WL+S P  SITSW+DLAEKFL K+FP SKN KYR+EI +F++   E +  +WE F+RL++ C HHG+P C+
Subjt:  EDAEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACM

U5CUI2 Retrotrans_gag domain-containing protein7.4e-1955.41Show/hide
Query:  AEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACM
        A +WL++ PP+S+T+WNDLAEKFL K+FP ++N K+R+EI+SF++  +E    AWERF+ L+RKC HHG+P C+
Subjt:  AEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFRKSYNEPLDAAWERFQRLVRKCSHHGLPACM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAAAGAGTATCAACTCTTCGAGCTAGATCCTAAGATAGAAAGAACCTTTTGTCGTCGTCATAGAGAGCAAAGACGAAAGAAAAGGGAACAACAAGAGTTGAGCAA
AGGCCAAAATGGTGGGAGAATACCTCCAGCACCACCAGTTCCACTGATGCCACAAAATGAAAATTTGATCTCTATTGCAGAAGAAGATGCCGAGGCTTGGTTAGATTCAT
TTCCACCAAACTCCATCACATCCTGGAATGACTTGGCAGAGAAGTTCCTAGAGAAGTTTTTTCCGTCCAGCAAGAATACTAAGTATAGAGCAGAGATCATTTCCTTTAGA
AAATCTTACAATGAGCCTTTAGACGCAGCATGGGAGAGATTCCAGAGGCTGGTCCGAAAGTGTTCTCATCATGGGTTGCCTGCATGCATGATGTGCAATTTGCTTACCGC
AAGTGTACGGGTCAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAAAGAGTATCAACTCTTCGAGCTAGATCCTAAGATAGAAAGAACCTTTTGTCGTCGTCATAGAGAGCAAAGACGAAAGAAAAGGGAACAACAAGAGTTGAGCAA
AGGCCAAAATGGTGGGAGAATACCTCCAGCACCACCAGTTCCACTGATGCCACAAAATGAAAATTTGATCTCTATTGCAGAAGAAGATGCCGAGGCTTGGTTAGATTCAT
TTCCACCAAACTCCATCACATCCTGGAATGACTTGGCAGAGAAGTTCCTAGAGAAGTTTTTTCCGTCCAGCAAGAATACTAAGTATAGAGCAGAGATCATTTCCTTTAGA
AAATCTTACAATGAGCCTTTAGACGCAGCATGGGAGAGATTCCAGAGGCTGGTCCGAAAGTGTTCTCATCATGGGTTGCCTGCATGCATGATGTGCAATTTGCTTACCGC
AAGTGTACGGGTCAAGTAA
Protein sequenceShow/hide protein sequence
MSKEYQLFELDPKIERTFCRRHREQRRKKREQQELSKGQNGGRIPPAPPVPLMPQNENLISIAEEDAEAWLDSFPPNSITSWNDLAEKFLEKFFPSSKNTKYRAEIISFR
KSYNEPLDAAWERFQRLVRKCSHHGLPACMMCNLLTASVRVK