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Lag0027971 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027971
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionProtein SDA1
Genome locationchr8:8950667..8951086
RNA-Seq ExpressionLag0027971
SyntenyLag0027971
Gene Ontology termsGO:0000055 - ribosomal large subunit export from nucleus (biological process)
GO:0015031 - protein transport (biological process)
GO:0030036 - actin cytoskeleton organization (biological process)
GO:0042273 - ribosomal large subunit biogenesis (biological process)
GO:0005730 - nucleolus (cellular component)
InterPro domainsIPR012977 - Uncharacterised domain NUC130/133, N-terminal
IPR027312 - Sda1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575976.1 Protein SDA1-like protein, partial [Cucurbita argyrosperma subsp. sororia]8.7e-3785.42Show/hide
Query:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN
        MNS PE+LSL LLQ KMK DP GYE ELVL+YNQFKSSMELFKQQASLHF S+GGIGSDPSVAKDLSDRA FLAHVTPFY KHL EFPKQLA LLN
Subjt:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN

KAG7014500.1 Protein SDA1-like protein [Cucurbita argyrosperma subsp. argyrosperma]8.7e-3785.42Show/hide
Query:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN
        MNS PE+LSL LLQ KMK DP GYE ELVL+YNQFKSSMELFKQQASLHF S+GGIGSDPSVAKDLSDRA FLAHVTPFY KHL EFPKQLA LLN
Subjt:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN

XP_022953635.1 protein SDA1 homolog [Cucurbita moschata]8.7e-3785.42Show/hide
Query:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN
        MNS PE+LSL LLQ KMK DP GYE ELVL+YNQFKSSMELFKQQASLHF S+GGIGSDPSVAKDLSDRA FLAHVTPFY KHL EFPKQLA LLN
Subjt:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN

XP_022991552.1 protein SDA1 homolog [Cucurbita maxima]8.7e-3785.42Show/hide
Query:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN
        MNS PE+LSL LLQ KMK DP GYE ELVL+YNQFKSSMELFKQQASLHF S+GGIGSDPSVAKDLSDRA FLAHVTPFY KHL EFPKQLA LLN
Subjt:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN

XP_023548412.1 protein SDA1 homolog [Cucurbita pepo subsp. pepo]8.7e-3785.42Show/hide
Query:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN
        MNS PE+LSL LLQ KMK DP GYE ELVL+YNQFKSSMELFKQQASLHF S+GGIGSDPSVAKDLSDRA FLAHVTPFY KHL EFPKQLA LLN
Subjt:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN

TrEMBL top hitse value%identityAlignment
A0A1S3CDG0 Protein SDA19.4e-3785.42Show/hide
Query:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN
        MNSAPEKL+L LLQ KMK DP GYE ELVL+YNQFKSSMELFKQQASLHF S+GGIGSDPSVAKDLSDRA FLAHVT  YPKHL EFPKQLA LLN
Subjt:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN

A0A5A7TGU7 Protein SDA19.4e-3785.42Show/hide
Query:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN
        MNSAPEKL+L LLQ KMK DP GYE ELVL+YNQFKSSMELFKQQASLHF S+GGIGSDPSVAKDLSDRA FLAHVT  YPKHL EFPKQLA LLN
Subjt:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN

A0A6J1D5Q3 Protein SDA15.5e-3786.46Show/hide
Query:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN
        M+S PEKLSL LLQ KMK DP GYESELVL+Y+QFKSSMELFKQQASLHF+SIGGIGSDPSVAKDLSDRA FLAHVTPFY KHL EFPKQLA LLN
Subjt:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN

A0A6J1GQ82 Protein SDA14.2e-3785.42Show/hide
Query:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN
        MNS PE+LSL LLQ KMK DP GYE ELVL+YNQFKSSMELFKQQASLHF S+GGIGSDPSVAKDLSDRA FLAHVTPFY KHL EFPKQLA LLN
Subjt:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN

A0A6J1JM56 Protein SDA14.2e-3785.42Show/hide
Query:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN
        MNS PE+LSL LLQ KMK DP GYE ELVL+YNQFKSSMELFKQQASLHF S+GGIGSDPSVAKDLSDRA FLAHVTPFY KHL EFPKQLA LLN
Subjt:  MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN

SwissProt top hitse value%identityAlignment
A5D7C2 Protein SDA1 homolog1.7e-0632.95Show/hide
Query:  SLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN
        +L  LQ  +K DP  Y  E +  YN +KS++E+FK Q +               +K+L++   F+A ++  YP+HL+ FP++L  LL+
Subjt:  SLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN

Q55DE2 Protein SDA1 homolog2.8e-0632.99Show/hide
Query:  LSLLQLK--MKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLL--NIKDIRP
        L LLQL+   K DP+ Y+ E +L Y  + + +++F+ + +  F             K  S   ++L+HV   YPK L+EFPKQ++ LL  N  ++ P
Subjt:  LSLLQLK--MKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLL--NIKDIRP

Q5XIQ5 Protein SDA1 homolog3.4e-0735.23Show/hide
Query:  SLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN
        +L  LQ  +K DP  Y  E +  YN +KS+ME+FK Q +               +K+L++   F+A +   YP+HL+EFP++L  LL+
Subjt:  SLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN

Q80UZ2 Protein SDA1 homolog9.8e-0734.09Show/hide
Query:  SLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN
        +L  LQ  +K DP  Y  E +  YN +KS+ME+FK Q +               +K+L++   F+A +   YP+HL+ FP++L  LL+
Subjt:  SLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN

Q9NVU7 Protein SDA1 homolog2.4e-0530.68Show/hide
Query:  SLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN
        +L  LQ  +K DP  Y  E +  YN +KS++E+FK Q +               +K+L++   F+A ++  YP++L+ FP+++  LL+
Subjt:  SLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLN

Arabidopsis top hitse value%identityAlignment
AT1G13160.1 ARM repeat superfamily protein5.1e-2766.67Show/hide
Query:  EKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLL
        E +SL  LQ K+K DP GYE+EL LIY QFK+S++LF + A+L F+S GGIGSDPSV+KDL DRA FLAHVTPFYPK L  FP QL  LL
Subjt:  EKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTCGGCCCCTGAGAAGCTAAGCCTATCATTGCTACAATTGAAGATGAAGGTTGATCCAACAGGGTACGAGTCTGAGTTAGTTCTCATCTACAACCAATTCAAATC
ATCTATGGAGCTATTTAAGCAACAAGCATCTCTTCACTTCAACTCTATCGGTGGCATTGGTAGCGACCCTTCAGTGGCTAAGGACCTTAGTGACAGAGCGACGTTTTTGG
CTCACGTTACTCCATTTTACCCTAAACATCTTAATGAATTTCCAAAACAACTAGCTCATTTGCTTAATATTAAGGATATCAGGCCTATGGCCCAAGACAAGGAGGAACCC
AAACCTATGGGCCAGCTATCGGAGCCCATTAACAGAAGGAAAAGTTCATCAGTCCAGAAGGTTCTTGTAAACAATACAGCTGCAAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAATTCGGCCCCTGAGAAGCTAAGCCTATCATTGCTACAATTGAAGATGAAGGTTGATCCAACAGGGTACGAGTCTGAGTTAGTTCTCATCTACAACCAATTCAAATC
ATCTATGGAGCTATTTAAGCAACAAGCATCTCTTCACTTCAACTCTATCGGTGGCATTGGTAGCGACCCTTCAGTGGCTAAGGACCTTAGTGACAGAGCGACGTTTTTGG
CTCACGTTACTCCATTTTACCCTAAACATCTTAATGAATTTCCAAAACAACTAGCTCATTTGCTTAATATTAAGGATATCAGGCCTATGGCCCAAGACAAGGAGGAACCC
AAACCTATGGGCCAGCTATCGGAGCCCATTAACAGAAGGAAAAGTTCATCAGTCCAGAAGGTTCTTGTAAACAATACAGCTGCAAGATAA
Protein sequenceShow/hide protein sequence
MNSAPEKLSLSLLQLKMKVDPTGYESELVLIYNQFKSSMELFKQQASLHFNSIGGIGSDPSVAKDLSDRATFLAHVTPFYPKHLNEFPKQLAHLLNIKDIRPMAQDKEEP
KPMGQLSEPINRRKSSSVQKVLVNNTAAR