CuGenDBv2

Gene ID	Lag0027975
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Ribonuclease H
Genome location	chr8:9024645..9025202
RNA-Seq Expression	Lag0027975
Synteny	Lag0027975
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR041588 - Integrase zinc-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

TQE13472.1 hypothetical protein C1H46_001039 [Malus baccata]

1.1e-50

61.49

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Query:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE
        +P LRCL    A+ V+RE+HEGVCG+  G++SL HK  RQGYYWPT+ QDA   +RS D+CQR+A IP  PPEPLT  ISPWPF QWG+ LIGP+   K 
Subjt:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE

Query:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTII
        + +YA+VAV+YFTKWA+ EPL+TITE KI D++WKNI+C F IPN I+
Subjt:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTII

XP_020421233.1 uncharacterized protein LOC109949580 [Prunus persica]

8.3e-51

53.55

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Query:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE
        +P LRCL      YV+RE+HEG+CGN  GA+SL HK  RQGY+WP++  DA+ FT+  D+CQRFA IP+ P EPLT+ +SPWPF QWG+ LIGP+ + K 
Subjt:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE

Query:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTIIQTMTDSLTTQQHLGSFAQTWASHTVVHPRLILKPM
        Q KYAVVAV+YFTKWA+ E L+TIT  +I  ++W+NIVC F IPN+I+     +LTT  +  +F  T     V  P+ IL PM
Subjt:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTIIQTMTDSLTTQQHLGSFAQTWASHTVVHPRLILKPM

XP_022154103.1 uncharacterized protein LOC111021439 [Momordica charantia]

1.4e-53

66.89

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Query:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE
        +PLL+CL    A YVMRE+HEGVCG+  GA+SL HKI RQGYYWPTML D K FT+  D+CQRFA +PRQPPEPLTS +S WPF QWGIYLI PL   + 
Subjt:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE

Query:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTII
        QTK+AVVAV+YFTKWA+ + L+TITEKK+ D+IWKNI+C F I  +II
Subjt:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTII

XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]

1.6e-54

68.24

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Query:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE
        +PLL+CL    A YVMRE+HEGVCG+  GA+SL HKI RQGYYWPTML D K FT+  D+CQRFA +PRQPPEPLTS +SPWPF QWGI LIGPL   K 
Subjt:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE

Query:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTII
        QTK+AVVAV+YFTKWA+ + L+TITEKK+  +IWKNI+C F IP  II
Subjt:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTII

XP_024036931.1 uncharacterized protein LOC112096932 [Citrus clementina]

1.3e-51

55.17

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Query:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE
        +P LRCL +  AKYVMRE+HEG+CGN  GA+SL  K  RQGYYWPTM +DAKN  RS D+CQRFA +P  PPE LT   SPWPF  WG+ LIGPL   K 
Subjt:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE

Query:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTIIQTMTDSLTTQQHLGSFAQTWASHTVV
        Q K+A+VAV+YFTKWA+ EPL++ITE+K  ++IWKN++C F IP  I+    +   T  H  S  Q  A + ++
Subjt:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTIIQTMTDSLTTQQHLGSFAQTWASHTVV

TrEMBL top hits

e value

%identity

Alignment

A0A540K7R2 Ribonuclease H

6.9e-51

61.49

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Query:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE
        +P LRCL    A+ V+RE+HEGVCG+  G++SL HK  RQGYYWPT+ QDA   +RS D+CQR+A IP  PPEPLT  ISPWPF QWG+ LIGP+   K 
Subjt:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE

Query:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTII
        + +YA+VAV+YFTKWA+ EPL+TITE KI D++WKNI+C F IPN I+
Subjt:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTII

A0A540M6H6 Integrase catalytic domain-containing protein

6.9e-51

61.49

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Query:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE
        +P LRCL    A+ V+RE+HEGVCG+  G++SL HK  RQGYYWPT+ QDA   +RS D+CQR+A IP  PPEPLT  ISPWPF QWG+ LIGP+   K 
Subjt:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE

Query:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTII
        + +YA+VAV+YFTKWA+ EPL+TITE KI D++WKNI+C F IPN I+
Subjt:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTII

A0A540NR24 Ribonuclease H

5.2e-51

61.49

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Query:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE
        +P LRCL    A+ V+RE+HEGVCG+  G++SL HK  RQGYYWPT+ QDA   +RS D+CQR+A IP  PPEPLT  ISPWPF QWG+ LIGP+   K 
Subjt:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE

Query:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTII
        + +YA+VAV+YFTKWA+ EPL+TITE KI D++WKNI+C F IPN I+
Subjt:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTII

A0A6J1DJC7 Ribonuclease H

6.6e-54

66.89

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Query:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE
        +PLL+CL    A YVMRE+HEGVCG+  GA+SL HKI RQGYYWPTML D K FT+  D+CQRFA +PRQPPEPLTS +S WPF QWGIYLI PL   + 
Subjt:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE

Query:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTII
        QTK+AVVAV+YFTKWA+ + L+TITEKK+ D+IWKNI+C F I  +II
Subjt:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTII

A0A6J1DZU0 Ribonuclease H

7.8e-55

68.24

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Query:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE
        +PLL+CL    A YVMRE+HEGVCG+  GA+SL HKI RQGYYWPTML D K FT+  D+CQRFA +PRQPPEPLTS +SPWPF QWGI LIGPL   K 
Subjt:  MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKE

Query:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTII
        QTK+AVVAV+YFTKWA+ + L+TITEKK+  +IWKNI+C F IP  II
Subjt:  QTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTII

SwissProt top hits

e value

%identity

Alignment

Q9P2P1 Protein NYNRIN

9.3e-05

24.18

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Query:  PLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPR----------QPPEPLTSSISPWPFTQWGIYL
        P +  +P +  + ++  VH+   G     +    K+   G +WP M +  K++ RS   C     IPR          + P PL S+ +PW   Q  I +
Subjt:  PLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPR----------QPPEPLTSSISPWPFTQWGIYL

Query:  IGPLLQSKEQTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIP
        +GP+  S+E  K+ ++  +  T+W +  PL   T   +A  + +++   + +P
Subjt:  IGPLLQSKEQTKYAVVAVNYFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIP

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCGCTGTTGAGGTGCCTTCCCGCAAGAAACGCAAAATATGTGATGAGGGAGGTACATGAAGGGGTGTGTGGAAATCAGTTAGGAGCAAAATCCCTATGTCATAAGAT
TAGTAGACAAGGTTACTACTGGCCGACAATGTTACAGGATGCTAAAAATTTCACGAGGTCTTATGATCAATGCCAAAGGTTTGCACCGATTCCAAGGCAACCACCAGAGC
CTTTAACGAGTAGTATCAGTCCTTGGCCATTCACGCAATGGGGGATATACCTGATTGGACCTTTGCTTCAAAGTAAAGAACAGACCAAGTATGCAGTGGTGGCAGTAAAT
TATTTCACAAAATGGGCAAAGACAGAACCGTTATCGACTATTACAGAGAAAAAGATTGCTGATTACATTTGGAAGAATATAGTGTGTTGTTTTCGGATTCCCAACACCAT
TATTCAGACAATGACAGACAGTTTGACAACGCAACAACATTTAGGAAGTTTTGCTCAGACTTGGGCATCACACACCGTTGTTCATCCCCGGCTCATCCTCAAGCCAATGG
GCATGTAG

mRNA sequence

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Protein sequence

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MPLLRCLPARNAKYVMREVHEGVCGNQLGAKSLCHKISRQGYYWPTMLQDAKNFTRSYDQCQRFAPIPRQPPEPLTSSISPWPFTQWGIYLIGPLLQSKEQTKYAVVAVN
YFTKWAKTEPLSTITEKKIADYIWKNIVCCFRIPNTIIQTMTDSLTTQQHLGSFAQTWASHTVVHPRLILKPMGM

Lag0027975 (gene) of Sponge gourd (AG-4) v1 genome