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Lag0027989 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027989
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr8:9414196..9414993
RNA-Seq ExpressionLag0027989
SyntenyLag0027989
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147190.1 uncharacterized protein LOC111016201 [Momordica charantia]1.1e-0746.3Show/hide
Query:  RILSKVIEPTQSNSKNVLKFLGKLRIRLDHKIAQSPRIYRAYVTRYTTRIMKE-QSTQLEKTRKDIEELREKMDAILVALEKSKIEADSAQSSNTMNDP-
        RILS+ + P QS  +  L            KIA+S   +R Y TR   R+M E Q  + EKTRKDIEELREK+D IL+ALEK K  AD A SSN +++P 
Subjt:  RILSKVIEPTQSNSKNVLKFLGKLRIRLDHKIAQSPRIYRAYVTRYTTRIMKE-QSTQLEKTRKDIEELREKMDAILVALEKSKIEADSAQSSNTMNDP-

Query:  -----PIW
             P+W
Subjt:  -----PIW

XP_022149382.1 uncharacterized protein LOC111017812 [Momordica charantia]6.3e-0640.17Show/hide
Query:  MKEQSTQLEKTRKDIEELREKMDAILVALEKSKIEADSAQSSNTMN------------DPPIWQSTE---STTPKYHPLYNIPVEQHPFSFFKNEQVHVL
        MK+Q  + EK RKDIEELREK+D IL+ALEK K  AD   SSN ++            DPP+    E        Y+PLY+I V Q+P  F K  Q  + 
Subjt:  MKEQSTQLEKTRKDIEELREKMDAILVALEKSKIEADSAQSSNTMN------------DPPIWQSTE---STTPKYHPLYNIPVEQHPFSFFKNEQVHVL

Query:  HQPGFSLPKEAAPKVTI
            F  P++  P  T+
Subjt:  HQPGFSLPKEAAPKVTI

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]1.5e-0742.71Show/hide
Query:  MKEQSTQLEKTRKDIEELREKMDAILVALEKSKIEADSAQSSNTMND------------PPIWQSTESTTPK---YHPLYNIPVEQHPFSFFKNEQ
        M++Q  + EKTRKDIEELREK+D I + LEK K  AD A SSN +++            PP+    E   P+   Y+PLY++P+ Q+P +F K  Q
Subjt:  MKEQSTQLEKTRKDIEELREKMDAILVALEKSKIEADSAQSSNTMND------------PPIWQSTESTTPK---YHPLYNIPVEQHPFSFFKNEQ

TrEMBL top hitse value%identityAlignment
A0A6J1CZG4 uncharacterized protein LOC1110162015.5e-0846.3Show/hide
Query:  RILSKVIEPTQSNSKNVLKFLGKLRIRLDHKIAQSPRIYRAYVTRYTTRIMKE-QSTQLEKTRKDIEELREKMDAILVALEKSKIEADSAQSSNTMNDP-
        RILS+ + P QS  +  L            KIA+S   +R Y TR   R+M E Q  + EKTRKDIEELREK+D IL+ALEK K  AD A SSN +++P 
Subjt:  RILSKVIEPTQSNSKNVLKFLGKLRIRLDHKIAQSPRIYRAYVTRYTTRIMKE-QSTQLEKTRKDIEELREKMDAILVALEKSKIEADSAQSSNTMNDP-

Query:  -----PIW
             P+W
Subjt:  -----PIW

A0A6J1D7T3 uncharacterized protein LOC1110178123.0e-0640.17Show/hide
Query:  MKEQSTQLEKTRKDIEELREKMDAILVALEKSKIEADSAQSSNTMN------------DPPIWQSTE---STTPKYHPLYNIPVEQHPFSFFKNEQVHVL
        MK+Q  + EK RKDIEELREK+D IL+ALEK K  AD   SSN ++            DPP+    E        Y+PLY+I V Q+P  F K  Q  + 
Subjt:  MKEQSTQLEKTRKDIEELREKMDAILVALEKSKIEADSAQSSNTMN------------DPPIWQSTE---STTPKYHPLYNIPVEQHPFSFFKNEQVHVL

Query:  HQPGFSLPKEAAPKVTI
            F  P++  P  T+
Subjt:  HQPGFSLPKEAAPKVTI

A0A6J1DZ90 Ribonuclease H7.2e-0842.71Show/hide
Query:  MKEQSTQLEKTRKDIEELREKMDAILVALEKSKIEADSAQSSNTMND------------PPIWQSTESTTPK---YHPLYNIPVEQHPFSFFKNEQ
        M++Q  + EKTRKDIEELREK+D I + LEK K  AD A SSN +++            PP+    E   P+   Y+PLY++P+ Q+P +F K  Q
Subjt:  MKEQSTQLEKTRKDIEELREKMDAILVALEKSKIEADSAQSSNTMND------------PPIWQSTESTTPK---YHPLYNIPVEQHPFSFFKNEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCACTCAGATTAGGAGAGTCACTCGAAGGGCAGATGAACTAGCAGAAGATGCACGTATTCTCTCTAAAGTCATAGAACCGACACAGTCGAATAGCAAGAATGTGCT
CAAGTTTCTGGGAAAGCTTCGTATACGTTTAGATCATAAGATAGCTCAGTCACCTCGAATCTACCGCGCCTACGTCACAAGATACACGACAAGGATCATGAAAGAGCAAA
GTACTCAGCTGGAGAAAACGAGAAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCTTGGAGAAAAGCAAAATAGAAGCTGATAGTGCTCAGTCC
AGCAATACAATGAATGACCCTCCAATATGGCAATCAACAGAGAGTACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGCAGCACCCATTTTCATTTTTCAA
GAATGAGCAAGTGCATGTGCTCCATCAACCTGGATTTTCACTGCCTAAGGAGGCAGCTCCCAAGGTGACCATTACGGTTCCCAATTTAGATGATCCTGTAATCAGAAAAG
AGCTAACGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCACTCAGATTAGGAGAGTCACTCGAAGGGCAGATGAACTAGCAGAAGATGCACGTATTCTCTCTAAAGTCATAGAACCGACACAGTCGAATAGCAAGAATGTGCT
CAAGTTTCTGGGAAAGCTTCGTATACGTTTAGATCATAAGATAGCTCAGTCACCTCGAATCTACCGCGCCTACGTCACAAGATACACGACAAGGATCATGAAAGAGCAAA
GTACTCAGCTGGAGAAAACGAGAAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCTTGGAGAAAAGCAAAATAGAAGCTGATAGTGCTCAGTCC
AGCAATACAATGAATGACCCTCCAATATGGCAATCAACAGAGAGTACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGCAGCACCCATTTTCATTTTTCAA
GAATGAGCAAGTGCATGTGCTCCATCAACCTGGATTTTCACTGCCTAAGGAGGCAGCTCCCAAGGTGACCATTACGGTTCCCAATTTAGATGATCCTGTAATCAGAAAAG
AGCTAACGTGA
Protein sequenceShow/hide protein sequence
MLTQIRRVTRRADELAEDARILSKVIEPTQSNSKNVLKFLGKLRIRLDHKIAQSPRIYRAYVTRYTTRIMKEQSTQLEKTRKDIEELREKMDAILVALEKSKIEADSAQS
SNTMNDPPIWQSTESTTPKYHPLYNIPVEQHPFSFFKNEQVHVLHQPGFSLPKEAAPKVTITVPNLDDPVIRKELT