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Lag0027991 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027991
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr8:9512231..9512620
RNA-Seq ExpressionLag0027991
SyntenyLag0027991
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155000.1 uncharacterized protein LOC111022144 [Momordica charantia]1.1e-3662.4Show/hide
Query:  MNCNDSQKIRGAVFMLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIK
        + C D  K++GAVFML+ +A  WW S++AAEDHAN  + W RFKD LYDYY+ ETVKD KEAEFLHL QG+++V QYERKFT LSRFA +L+     KIK
Subjt:  MNCNDSQKIRGAVFMLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIK

Query:  RFVKGLREEIRGSVALSRPTTFAEA
        RFVKGL + IRG V L RP ++AEA
Subjt:  RFVKGLREEIRGSVALSRPTTFAEA

XP_022155872.1 uncharacterized protein LOC111022885 [Momordica charantia]6.2e-3770.27Show/hide
Query:  MLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIKRFVKGLREEIRGSV
        ML+D+A  WW SV+AAEDHAN P++W RFKD LYDYY+PETVKD KEAEFLHL QG++TV QYERKFT LSRFA +L+     KIKRFVKGLR+ IRG V
Subjt:  MLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIKRFVKGLREEIRGSV

Query:  ALSRPTTFAEA
         L RP T+AEA
Subjt:  ALSRPTTFAEA

XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]1.3e-3965.6Show/hide
Query:  MNCNDSQKIRGAVFMLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIK
        + C D  K++GAVFML+ +A  WW SV+AAED+AN P+ W RFK+ LYDYY+PETVKD KEAEFLHL QG+++V QYERKFT LSRFA +L+     KIK
Subjt:  MNCNDSQKIRGAVFMLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIK

Query:  RFVKGLREEIRGSVALSRPTTFAEA
        RFVKGLR+ IRG V L RPTT+AEA
Subjt:  RFVKGLREEIRGSVALSRPTTFAEA

XP_022156985.1 uncharacterized protein LOC111023814 [Momordica charantia]1.6e-3763.2Show/hide
Query:  MNCNDSQKIRGAVFMLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIK
        + CND  K++G VFML+  A  WW SV A EDHAN  ++W RFKD LYDYYFP+T+KD KE EFL LTQGSMTVV+YE+KFT LSRFAP+++     KIK
Subjt:  MNCNDSQKIRGAVFMLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIK

Query:  RFVKGLREEIRGSVALSRPTTFAEA
        RFVKGL + I+G V L RP T+AEA
Subjt:  RFVKGLREEIRGSVALSRPTTFAEA

XP_022159077.1 uncharacterized protein LOC111025517 [Momordica charantia]3.6e-3760.8Show/hide
Query:  MNCNDSQKIRGAVFMLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIK
        ++C +  K++G VFML+ +A  WW SV+ AEDHAN P++W RFKD LYDYY+P+T+KD KEAEFLH + G++TV QYERKFT LS FA +L+     KIK
Subjt:  MNCNDSQKIRGAVFMLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIK

Query:  RFVKGLREEIRGSVALSRPTTFAEA
        RFVKGLR+ IRG V L RP T+AEA
Subjt:  RFVKGLREEIRGSVALSRPTTFAEA

TrEMBL top hitse value%identityAlignment
A0A6J1DQ01 uncharacterized protein LOC1110232505.1e-3766.38Show/hide
Query:  MNCNDSQKIRGAVFMLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIK
        + C D  K++GAVFML+  A  WW SV+AAEDHAN P++W RFKD LYDYY+PETVKD KEAEFLH +QG++TV QYERKFT LSRFA +L+     KIK
Subjt:  MNCNDSQKIRGAVFMLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIK

Query:  RFVKGLREEIRGSVAL
        RFVKGLR+ IRG V L
Subjt:  RFVKGLREEIRGSVAL

A0A6J1DQJ4 uncharacterized protein LOC1110228853.0e-3770.27Show/hide
Query:  MLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIKRFVKGLREEIRGSV
        ML+D+A  WW SV+AAEDHAN P++W RFKD LYDYY+PETVKD KEAEFLHL QG++TV QYERKFT LSRFA +L+     KIKRFVKGLR+ IRG V
Subjt:  MLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIKRFVKGLREEIRGSV

Query:  ALSRPTTFAEA
         L RP T+AEA
Subjt:  ALSRPTTFAEA

A0A6J1DRW8 uncharacterized protein LOC1110238147.9e-3863.2Show/hide
Query:  MNCNDSQKIRGAVFMLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIK
        + CND  K++G VFML+  A  WW SV A EDHAN  ++W RFKD LYDYYFP+T+KD KE EFL LTQGSMTVV+YE+KFT LSRFAP+++     KIK
Subjt:  MNCNDSQKIRGAVFMLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIK

Query:  RFVKGLREEIRGSVALSRPTTFAEA
        RFVKGL + I+G V L RP T+AEA
Subjt:  RFVKGLREEIRGSVALSRPTTFAEA

A0A6J1DUM2 uncharacterized protein LOC1110232476.5e-4065.6Show/hide
Query:  MNCNDSQKIRGAVFMLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIK
        + C D  K++GAVFML+ +A  WW SV+AAED+AN P+ W RFK+ LYDYY+PETVKD KEAEFLHL QG+++V QYERKFT LSRFA +L+     KIK
Subjt:  MNCNDSQKIRGAVFMLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIK

Query:  RFVKGLREEIRGSVALSRPTTFAEA
        RFVKGLR+ IRG V L RPTT+AEA
Subjt:  RFVKGLREEIRGSVALSRPTTFAEA

A0A6J1DYU5 uncharacterized protein LOC1110255171.8e-3760.8Show/hide
Query:  MNCNDSQKIRGAVFMLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIK
        ++C +  K++G VFML+ +A  WW SV+ AEDHAN P++W RFKD LYDYY+P+T+KD KEAEFLH + G++TV QYERKFT LS FA +L+     KIK
Subjt:  MNCNDSQKIRGAVFMLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIK

Query:  RFVKGLREEIRGSVALSRPTTFAEA
        RFVKGLR+ IRG V L RP T+AEA
Subjt:  RFVKGLREEIRGSVALSRPTTFAEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTGCAATGATTCCCAGAAAATTAGAGGAGCAGTCTTCATGCTAAAGGATGACGCTCGCATGTGGTGGCAGTCCGTGTCAGCCGCCGAGGACCATGCCAATCAGCC
GATGTCTTGGGAAAGGTTCAAAGACCGGCTGTACGATTACTACTTCCCAGAGACCGTCAAAGATGATAAAGAAGCTGAGTTCCTCCATCTGACCCAGGGAAGTATGACAG
TTGTACAGTATGAAAGAAAGTTCACTGCATTGTCTCGTTTTGCTCCCGACCTCGTCAGCGCTCCGGAAAGGAAGATCAAGAGGTTCGTAAAAGGCCTCCGTGAGGAAATT
CGTGGTTCTGTGGCCCTGAGCAGACCCACAACCTTCGCTGAAGCGCCACAGGCGCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACTGCAATGATTCCCAGAAAATTAGAGGAGCAGTCTTCATGCTAAAGGATGACGCTCGCATGTGGTGGCAGTCCGTGTCAGCCGCCGAGGACCATGCCAATCAGCC
GATGTCTTGGGAAAGGTTCAAAGACCGGCTGTACGATTACTACTTCCCAGAGACCGTCAAAGATGATAAAGAAGCTGAGTTCCTCCATCTGACCCAGGGAAGTATGACAG
TTGTACAGTATGAAAGAAAGTTCACTGCATTGTCTCGTTTTGCTCCCGACCTCGTCAGCGCTCCGGAAAGGAAGATCAAGAGGTTCGTAAAAGGCCTCCGTGAGGAAATT
CGTGGTTCTGTGGCCCTGAGCAGACCCACAACCTTCGCTGAAGCGCCACAGGCGCACTGA
Protein sequenceShow/hide protein sequence
MNCNDSQKIRGAVFMLKDDARMWWQSVSAAEDHANQPMSWERFKDRLYDYYFPETVKDDKEAEFLHLTQGSMTVVQYERKFTALSRFAPDLVSAPERKIKRFVKGLREEI
RGSVALSRPTTFAEAPQAH