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Lag0027998 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0027998
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr8:9729187..9729666
RNA-Seq ExpressionLag0027998
SyntenyLag0027998
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RDY13916.1 hypothetical protein CR513_01096, partial [Mucuna pruriens]4.6e-1045.05Show/hide
Query:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAAVVQAATKSEAKAFGLCFMTTHTIDACPKIQ--DNGEVNTIGGYNGNKSYGNQ
        M+DAA+GGAL++KT   AR LIS+MA N+QQF  RGP    Q  T   AK +G+C    H  D+CP +Q  ++G+  ++G   G + YG Q
Subjt:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAAVVQAATKSEAKAFGLCFMTTHTIDACPKIQ--DNGEVNTIGGYNGNKSYGNQ

XP_024963453.1 uncharacterized protein LOC112503699, partial [Cynara cardunculus var. scolymus]1.2e-1034.48Show/hide
Query:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAAVVQAATKSEAKAFGLCFMTTHTIDACPKIQDN-----GEVNTIGGYNG--------NKSYG
        M+DAA+GGA+ NKT  E R LI++MA+NSQ F             K + KA G+C  T+H  D CP++Q++      +VN IGG+ G        N ++G
Subjt:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAAVVQAATKSEAKAFGLCFMTTHTIDACPKIQDN-----GEVNTIGGYNG--------NKSYG

Query:  NQQKPLM------------------FKQNQASTSTSGTFFDEALK
        NQ+ P                    F  NQA+ S+SG   ++ +K
Subjt:  NQQKPLM------------------FKQNQASTSTSGTFFDEALK

XP_024964029.1 uncharacterized protein LOC112504332 [Cynara cardunculus var. scolymus]2.1e-1034.48Show/hide
Query:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAAVVQAATKSEAKAFGLCFMTTHTIDACPKIQDN-----GEVNTIGGYNG---------NKSY
        M+DAA+GGA+ NKT  E R LI++MA+NSQQF             K + KA G+C  T H  DACP++Q++       +N IGGY G         N ++
Subjt:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAAVVQAATKSEAKAFGLCFMTTHTIDACPKIQDN-----GEVNTIGGYNG---------NKSY

Query:  GNQQKPLM-----------------FKQNQASTSTSGTFFDEALK
        GNQ+ P                   F  N+A++S+ G   ++ +K
Subjt:  GNQQKPLM-----------------FKQNQASTSTSGTFFDEALK

XP_024986583.1 uncharacterized protein LOC112521826 [Cynara cardunculus var. scolymus]5.4e-1133.13Show/hide
Query:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAAVVQ---------------------AATKSEAKAFGLCFMTTHTIDACPKIQDN-----GEV
        M+DAA+GGA+ NKT  E R LI++ AKNSQQF  R   A                           K + KA+G+C  T H IDACP++Q++       V
Subjt:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAAVVQ---------------------AATKSEAKAFGLCFMTTHTIDACPKIQDN-----GEV

Query:  NTIGGYNG---------NKSYGNQQKPLM-----------------FKQNQASTSTSGTFFDEALK
        N IGGY G         N  +GNQ+ P                   F  NQA++S+ G   ++ +K
Subjt:  NTIGGYNG---------NKSYGNQQKPLM-----------------FKQNQASTSTSGTFFDEALK

XP_024990730.1 uncharacterized protein LOC112525018 [Cynara cardunculus var. scolymus]4.6e-1032.34Show/hide
Query:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRG-----PAAVVQAAT--------------------KSEAKAFGLCFMTTHTIDACPKIQDN----
        M+DAA+GGA+ NKT  + R LI++MA+NSQ F  RG     P  + +  T                    K + KA G+C  T+H  DACP++Q++    
Subjt:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRG-----PAAVVQAAT--------------------KSEAKAFGLCFMTTHTIDACPKIQDN----

Query:  -GEVNTIGGYNG--------NKSYGNQQKPLMFKQ---------------NQASTSTSGTFFDEALK
          +VN IGG+ G        N+S+G Q+ P  F+Q               NQA++S++G   ++ +K
Subjt:  -GEVNTIGGYNG--------NKSYGNQQKPLMFKQ---------------NQASTSTSGTFFDEALK

TrEMBL top hitse value%identityAlignment
A0A1U8QA90 uncharacterized protein LOC1046118132.7e-0834.25Show/hide
Query:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAAVVQAATKSEAKAFGLCFMTTHTIDACPKIQDN--GEVNTIGGYNG----------------
        M+DAA+GGALV+KT   AR LI++M  NSQQF TR     +   +K   +A G+C +  H  D CP +Q+    +VN  GG+ G                
Subjt:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAAVVQAATKSEAKAFGLCFMTTHTIDACPKIQDN--GEVNTIGGYNG----------------

Query:  -----NKSYGN---------QQKPLMFKQNQASTSTSGTFFDEALK
             N SYGN          Q+P   +Q    TS SG   ++ +K
Subjt:  -----NKSYGN---------QQKPLMFKQNQASTSTSGTFFDEALK

A0A371FDR4 Uncharacterized protein (Fragment)3.5e-0840.78Show/hide
Query:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPA-AVVQAATKSEAKAFGLCFMTTHTIDACPKIQDN-----GEVNTIGGYN------GNKSYGN
        M+DAA+GGAL++KT   AR LIS+MA N+QQF  RGP+ + +     + AK  G+C    H ID CP +Q+        V  IGG+        N+ + N
Subjt:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPA-AVVQAATKSEAKAFGLCFMTTHTIDACPKIQDN-----GEVNTIGGYN------GNKSYGN

Query:  QQK
        QQ+
Subjt:  QQK

A0A371HWW9 Retrotrans_gag domain-containing protein (Fragment)1.2e-0843.88Show/hide
Query:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGP-------AAVVQAATKSEAKAFGLCFMTTHTIDACPKIQ--DNGEVNTIGGYNGNKSYGNQ
        M+DAA+GGAL++KT V AR LIS+MA N+QQF  RGP        AV Q      AK  G+C    H  D CP +Q  ++G+  ++G   G + YG Q
Subjt:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGP-------AAVVQAATKSEAKAFGLCFMTTHTIDACPKIQ--DNGEVNTIGGYNGNKSYGNQ

A0A371IFS9 Uncharacterized protein (Fragment)2.2e-1045.05Show/hide
Query:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAAVVQAATKSEAKAFGLCFMTTHTIDACPKIQ--DNGEVNTIGGYNGNKSYGNQ
        M+DAA+GGAL++KT   AR LIS+MA N+QQF  RGP    Q  T   AK +G+C    H  D+CP +Q  ++G+  ++G   G + YG Q
Subjt:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAAVVQAATKSEAKAFGLCFMTTHTIDACPKIQ--DNGEVNTIGGYNGNKSYGNQ

A0A484N6C8 Uncharacterized protein9.3e-0946.32Show/hide
Query:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAA-VVQAATKSEAKAFGLCFMTTHTIDACPKIQDNGEVNTIGGYNGNKSYGNQQKPLM
        +VDAA+GGALVNKT  +AR+L +++A+N+QQF TR      V     S+ K  G+C +  H  DACP +Q N EVN +  +N N    NQ+KP M
Subjt:  MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAA-VVQAATKSEAKAFGLCFMTTHTIDACPKIQDNGEVNTIGGYNGNKSYGNQQKPLM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGATGCAGCCAACGGAGGAGCATTAGTTAACAAGACAACTGTTGAAGCTAGAAAACTGATTTCAAGTATGGCTAAGAACTCTCAGCAATTCAGGACGAGAGGACC
AGCTGCAGTTGTGCAAGCCGCCACAAAAAGTGAGGCGAAAGCCTTTGGACTTTGCTTCATGACTACCCACACTATCGATGCTTGCCCAAAGATACAAGACAATGGAGAGG
TGAATACCATTGGTGGATACAATGGGAATAAAAGTTATGGGAACCAACAGAAGCCACTGATGTTCAAGCAGAATCAAGCTTCCACCTCAACTTCAGGGACATTTTTCGAT
GAGGCACTTAAGAAGGACTTGAATGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGATGCAGCCAACGGAGGAGCATTAGTTAACAAGACAACTGTTGAAGCTAGAAAACTGATTTCAAGTATGGCTAAGAACTCTCAGCAATTCAGGACGAGAGGACC
AGCTGCAGTTGTGCAAGCCGCCACAAAAAGTGAGGCGAAAGCCTTTGGACTTTGCTTCATGACTACCCACACTATCGATGCTTGCCCAAAGATACAAGACAATGGAGAGG
TGAATACCATTGGTGGATACAATGGGAATAAAAGTTATGGGAACCAACAGAAGCCACTGATGTTCAAGCAGAATCAAGCTTCCACCTCAACTTCAGGGACATTTTTCGAT
GAGGCACTTAAGAAGGACTTGAATGCTTAG
Protein sequenceShow/hide protein sequence
MVDAANGGALVNKTTVEARKLISSMAKNSQQFRTRGPAAVVQAATKSEAKAFGLCFMTTHTIDACPKIQDNGEVNTIGGYNGNKSYGNQQKPLMFKQNQASTSTSGTFFD
EALKKDLNA