CuGenDBv2

Gene ID	Lag0028039
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	40S ribosomal protein S3a
Genome location	chr8:11217404..11217718
RNA-Seq Expression	Lag0028039
Synteny	Lag0028039
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001593 - Ribosomal protein S3Ae

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG5122977.1 hypothetical protein JHK82_029714 [Glycine max]

1.5e-20

72.62

Show/hide

Query:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED-----DR--ERGLPGNVGNIFMYNLKTK
        ELVRKFIPE I KEIEKATSSIYPLQNVFI+KVKILKAPKFDLGKLMEVHGDYSED     DR  +  L      +F YN  TK
Subjt:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED-----DR--ERGLPGNVGNIFMYNLKTK

KCW60692.1 hypothetical protein EUGRSUZ_H03423 [Eucalyptus grandis]

2.5e-20

96.43

Show/hide

Query:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED
        ELVRKFIPESI KEIEKATSSIYPLQNVFI+KVKILKAPKFDLGKLMEVHGDYSED
Subjt:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED

XP_011030646.1 PREDICTED: 40S ribosomal protein S3a-2-like [Populus euphratica]

2.5e-20

96.43

Show/hide

Query:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED
        ELVRKFIPESI KEIEKATSSIYPLQNVFI+KVKILKAPKFDLGKLMEVHGDYSED
Subjt:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED

XP_034930999.1 40S ribosomal protein S3a-2 [Populus alba]

2.5e-20

96.43

Show/hide

Query:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED
        ELVRKFIPESI KEIEKATSSIYPLQNVFI+KVKILKAPKFDLGKLMEVHGDYSED
Subjt:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED

XP_038875051.1 40S ribosomal protein S3a [Benincasa hispida]

2.5e-20

96.43

Show/hide

Query:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED
        ELVRKFIPESI KEIEKATSSIYPLQNVFI+KVKILKAPKFDLGKLMEVHGDYSED
Subjt:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED

TrEMBL top hits

e value

%identity

Alignment

A0A5D3CZ21 40S ribosomal protein S3a

1.2e-20

96.43

Show/hide

Query:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED
        ELVRKFIPESI KEIEKATSSIYPLQNVFI+KVKILKAPKFDLGKLMEVHGDYSED
Subjt:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED

A0A6J1IG66 40S ribosomal protein S3a

1.2e-20

96.43

Show/hide

Query:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED
        ELVRKFIPESI KEIEKATSSIYPLQNVFI+KVKILKAPKFDLGKLMEVHGDYSED
Subjt:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED

A0A6J1KJB0 40S ribosomal protein S3a

1.2e-20

96.43

Show/hide

Query:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED
        ELVRKFIPESI KEIEKATSSIYPLQNVFI+KVKILKAPKFDLGKLMEVHGDYSED
Subjt:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED

A9PAH0 40S ribosomal protein S3a

1.2e-20

96.43

Show/hide

Query:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED
        ELVRKFIPESI KEIEKATSSIYPLQNVFI+KVKILKAPKFDLGKLMEVHGDYSED
Subjt:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED

A9PHL2 40S ribosomal protein S3a

1.2e-20

96.43

Show/hide

Query:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED
        ELVRKFIPESI KEIEKATSSIYPLQNVFI+KVKILKAPKFDLGKLMEVHGDYSED
Subjt:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED

SwissProt top hits

e value

%identity

Alignment

A5B4K1 40S ribosomal protein S3a-1

3.6e-22

91.07

Show/hide

Query:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED
        ELV+KFIPESI +EIEKATSSIYPLQNV+I+KVKILKAPKFDLGKLMEVHGDYSED
Subjt:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED

P33444 40S ribosomal protein S3a

2.1e-22

89.47

Show/hide

Query:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSEDD
        +LV+KFIPESI +EIEKATSSIYPLQNVFI+KVKILKAPKFDLGKLMEVHGDY+EDD
Subjt:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSEDD

P49198 40S ribosomal protein S3a

3.6e-22

91.07

Show/hide

Query:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED
        ELV+KFIPESI +EIEKATSSIYPLQNVFI+KVKILKAPKFD+GKLMEVHGDYSED
Subjt:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED

Q8GTE3 40S ribosomal protein S3a

2.8e-22

92.86

Show/hide

Query:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED
        ELVRKFIPE I KEIEKATSSIYPLQNVFI+KVKILK+PKFDLGKLMEVHGDYSED
Subjt:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED

Q9MBB3 40S ribosomal protein S3a

1.1e-21

77.94

Show/hide

Query:  ISRHLQFSGRQNELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED
        I R+   S    ELV KFIPESI +EIEKATSSI+PLQNVFI+KVKILKAPKFD+GKLMEVHGDYSED
Subjt:  ISRHLQFSGRQNELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSED

Arabidopsis top hits

e value

%identity

Alignment

AT3G04840.1 Ribosomal protein S3Ae

7.0e-21

80.7

Show/hide

Query:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSEDD
        +LV KFIPE+I +EIEKAT  IYPLQNVFI+KVKILKAPKFDLGKLM+VHGDYS +D
Subjt:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSEDD

AT4G34670.1 Ribosomal protein S3Ae

3.1e-21

82.46

Show/hide

Query:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSEDD
        ELV KFIPE+I +EIEKAT  IYPLQNVFI+KVKILKAPKFDLGKLMEVHGDY+ +D
Subjt:  ELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSEDD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATATCAAGGCACCTTCAGTTTTCAGGGAGGCAAAATGAATTGGTTCGCAAGTTCATTCCAGAGTCAATTGACAAGGAGATTGAAAAGGCAACCTCCAGCATCTACCC
TCTTCAAAATGTGTTTATCCAGAAAGTTAAAATTTTGAAAGCTCCCAAATTCGATCTTGGGAAGTTGATGGAGGTTCATGGTGACTACTCAGAAGATGATAGAGAGAGAG
GGCTACCAGGCAATGTGGGGAACATATTCATGTACAATTTGAAGACAAAGAAAATGTTTAATTTAAATAGCAAAGGAAGGTGTGGATTATTGTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MISRHLQFSGRQNELVRKFIPESIDKEIEKATSSIYPLQNVFIQKVKILKAPKFDLGKLMEVHGDYSEDDRERGLPGNVGNIFMYNLKTKKMFNLNSKGRCGLL

Lag0028039 (gene) of Sponge gourd (AG-4) v1 genome