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Lag0028056 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028056
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionAuxin response factor
Genome locationchr8:11944645..11945263
RNA-Seq ExpressionLag0028056
SyntenyLag0028056
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009734 - auxin-activated signaling pathway (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily
IPR044835 - Auxin response factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8670224.1 Auxin response factor 9 [Hibiscus syriacus]5.6e-1556.12Show/hide
Query:  SECLTPLD-DPATLTQAFV------------------------KIGWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        +ECL PLD + AT TQ  V                          GW+TFV SKRLVAGDSF FLRGENG LRVGVRR A QQ SMPLSVI S NMHL
Subjt:  SECLTPLD-DPATLTQAFV------------------------KIGWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

QCE20960.1 auxin response factor 9 [Siraitia grosvenorii]2.1e-1483.02Show/hide
Query:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        GW+TFV SKRLVAGDSF FLRGENG LRVGVRR ARQQ SMP SVI SH+MHL
Subjt:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

XP_039037658.1 auxin response factor 9-like isoform X1 [Hibiscus syriacus]5.6e-1556.12Show/hide
Query:  SECLTPLD-DPATLTQAFV------------------------KIGWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        +ECL PLD + AT TQ  V                          GW+TFV SKRLVAGDSF FLRGENG LRVGVRR A QQ SMPLSVI S NMHL
Subjt:  SECLTPLD-DPATLTQAFV------------------------KIGWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

XP_039037659.1 auxin response factor 9-like isoform X2 [Hibiscus syriacus]5.6e-1556.12Show/hide
Query:  SECLTPLD-DPATLTQAFV------------------------KIGWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        +ECL PLD + AT TQ  V                          GW+TFV SKRLVAGDSF FLRGENG LRVGVRR A QQ SMPLSVI S NMHL
Subjt:  SECLTPLD-DPATLTQAFV------------------------KIGWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

XP_039037660.1 auxin response factor 9-like isoform X3 [Hibiscus syriacus]5.6e-1556.12Show/hide
Query:  SECLTPLD-DPATLTQAFV------------------------KIGWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        +ECL PLD + AT TQ  V                          GW+TFV SKRLVAGDSF FLRGENG LRVGVRR A QQ SMPLSVI S NMHL
Subjt:  SECLTPLD-DPATLTQAFV------------------------KIGWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

TrEMBL top hitse value%identityAlignment
A0A0B0NAI6 Auxin response factor1.0e-1455.1Show/hide
Query:  SECLTPLD-DPATLTQAFV------------------------KIGWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        +ECL PLD + AT TQ  V                          GW+TFV SKRLVAGDSF FLRGENG LRVGVRR ARQQ SMP SVI S +MHL
Subjt:  SECLTPLD-DPATLTQAFV------------------------KIGWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

A0A5A7TU73 Auxin response factor1.0e-1483.02Show/hide
Query:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        GW+TFV SKRLVAGDSF FLRGENG LRVGVRR ARQQ SMP SVI SH+MHL
Subjt:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

A0A5D3D1H4 Auxin response factor1.0e-1483.02Show/hide
Query:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        GW+TFV SKRLVAGDSF FLRGENG LRVGVRR ARQQ SMP SVI SH+MHL
Subjt:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

A0A6A2YDI9 Auxin response factor2.7e-1556.12Show/hide
Query:  SECLTPLD-DPATLTQAFV------------------------KIGWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        +ECL PLD + AT TQ  V                          GW+TFV SKRLVAGDSF FLRGENG LRVGVRR A QQ SMPLSVI S NMHL
Subjt:  SECLTPLD-DPATLTQAFV------------------------KIGWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

A0A7J0H085 Auxin response factor1.0e-1481.13Show/hide
Query:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        GW+TFV SKRLVAGD+F FLRGENG LRVGVRR ARQQ SMP SVI SH+MHL
Subjt:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

SwissProt top hitse value%identityAlignment
K4DF01 Auxin response factor 2B1.3e-1473.58Show/hide
Query:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        GW+ FV SKRLVAGD+F FLRGENG LRVGVRR  RQQ + P SVI SH+MHL
Subjt:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

Q2LAJ3 Auxin response factor 2A1.3e-1473.58Show/hide
Query:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        GW+ FV SKRLVAGD+F FLRGENG LRVGVRR  RQQ + P SVI SH+MHL
Subjt:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

Q94JM3 Auxin response factor 27.6e-1573.58Show/hide
Query:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        GW+ FV SKRLVAGD+F FLRGENG LRVGVRR  RQQ ++P SVI SH+MHL
Subjt:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

Q9C5W9 Auxin response factor 183.4e-1575.47Show/hide
Query:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        GW+TFV SKRLVAGD+F FLRGENG LRVGVRR AR Q +MP SVI S +MHL
Subjt:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

Q9XED8 Auxin response factor 91.2e-1577.36Show/hide
Query:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        GW+TFV SKRLVAGD+F FLRGENG LRVGVRR   QQ SMP SVI SH+MHL
Subjt:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

Arabidopsis top hitse value%identityAlignment
AT3G61830.1 auxin response factor 182.4e-1675.47Show/hide
Query:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        GW+TFV SKRLVAGD+F FLRGENG LRVGVRR AR Q +MP SVI S +MHL
Subjt:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

AT4G23980.1 auxin response factor 98.3e-1777.36Show/hide
Query:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        GW+TFV SKRLVAGD+F FLRGENG LRVGVRR   QQ SMP SVI SH+MHL
Subjt:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

AT4G23980.2 auxin response factor 98.3e-1777.36Show/hide
Query:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        GW+TFV SKRLVAGD+F FLRGENG LRVGVRR   QQ SMP SVI SH+MHL
Subjt:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

AT5G62000.1 auxin response factor 25.4e-1673.58Show/hide
Query:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        GW+ FV SKRLVAGD+F FLRGENG LRVGVRR  RQQ ++P SVI SH+MHL
Subjt:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL

AT5G62000.2 auxin response factor 25.4e-1673.58Show/hide
Query:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL
        GW+ FV SKRLVAGD+F FLRGENG LRVGVRR  RQQ ++P SVI SH+MHL
Subjt:  GWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGGTTCTCCGTGCTCCGTAAAAATCTCTGAATGCTTGACTCCATTGGATGACCCAGCAACCCTGACTCAGGCATTTGTAAAGATCGGATGGAACACCTTTGTTAT
TTCTAAGAGACTAGTTGCTGGAGATTCTTTTGCATTCTTGAGGGGAGAAAATGGAGGGTTGCGAGTTGGAGTGAGACGTCCTGCTCGCCAACAAAGGAGCATGCCCTTGT
CTGTGATTTTGAGTCACAACATGCACTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGGGTTCTCCGTGCTCCGTAAAAATCTCTGAATGCTTGACTCCATTGGATGACCCAGCAACCCTGACTCAGGCATTTGTAAAGATCGGATGGAACACCTTTGTTAT
TTCTAAGAGACTAGTTGCTGGAGATTCTTTTGCATTCTTGAGGGGAGAAAATGGAGGGTTGCGAGTTGGAGTGAGACGTCCTGCTCGCCAACAAAGGAGCATGCCCTTGT
CTGTGATTTTGAGTCACAACATGCACTTATGA
Protein sequenceShow/hide protein sequence
MGGSPCSVKISECLTPLDDPATLTQAFVKIGWNTFVISKRLVAGDSFAFLRGENGGLRVGVRRPARQQRSMPLSVILSHNMHL