CuGenDBv2

Gene ID	Lag0028066
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Signal recognition particle subunit SRP68
Genome location	chr8:12265450..12269285
RNA-Seq Expression	Lag0028066
Synteny	Lag0028066
Gene Ontology terms	GO:0006614 - SRP-dependent cotranslational protein targeting to membrane (biological process) GO:0005786 - signal recognition particle, endoplasmic reticulum targeting (cellular component) GO:0005047 - signal recognition particle binding (molecular function) GO:0008312 - 7S RNA binding (molecular function) GO:0030942 - endoplasmic reticulum signal peptide binding (molecular function)
InterPro domains	IPR026258 - Signal recognition particle subunit SRP68 IPR038253 - SRP68, N-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008450345.1 PREDICTED: signal recognition particle subunit SRP68 isoform X1 [Cucumis melo]

3.5e-46

91.59

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Query:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK
        RAVYEELGKVGDL+NQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHI    GEMEGPAL+LFKAKLEA+M+ ARSQQAVSMTEFHWLGHRFPISNAK
Subjt:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK

Query:  TRVSILK
        TRVSILK
Subjt:  TRVSILK

XP_008450346.1 PREDICTED: signal recognition particle subunit SRP68 isoform X2 [Cucumis melo]

3.5e-46

91.59

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Query:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK
        RAVYEELGKVGDL+NQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHI    GEMEGPAL+LFKAKLEA+M+ ARSQQAVSMTEFHWLGHRFPISNAK
Subjt:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK

Query:  TRVSILK
        TRVSILK
Subjt:  TRVSILK

XP_011660162.1 signal recognition particle subunit SRP68 isoform X1 [Cucumis sativus]

3.5e-46

91.59

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Query:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK
        RAVYEELGKVGDL+NQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHI    GEMEGPAL+LFKAKLEA+M+ ARSQQAVSMTEFHWLGHRFPISNAK
Subjt:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK

Query:  TRVSILK
        TRVSILK
Subjt:  TRVSILK

XP_011660163.1 signal recognition particle subunit SRP68 isoform X2 [Cucumis sativus]

3.5e-46

91.59

Show/hide

Query:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK
        RAVYEELGKVGDL+NQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHI    GEMEGPAL+LFKAKLEA+M+ ARSQQAVSMTEFHWLGHRFPISNAK
Subjt:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK

Query:  TRVSILK
        TRVSILK
Subjt:  TRVSILK

XP_038879459.1 signal recognition particle subunit SRP68 isoform X1 [Benincasa hispida]

4.6e-46

90.65

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Query:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK
        RAVYEELGKVGDL+NQ+LCRERVEELEPSIRYCLHKIGKSNLQASELLHI    GEMEGPAL+LFKAKLEA+M+ ARSQQAVSMTEFHWLGHRFPISNAK
Subjt:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK

Query:  TRVSILK
        TRVSILK
Subjt:  TRVSILK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M2X1 Signal recognition particle subunit SRP68

1.7e-46

91.59

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Query:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK
        RAVYEELGKVGDL+NQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHI    GEMEGPAL+LFKAKLEA+M+ ARSQQAVSMTEFHWLGHRFPISNAK
Subjt:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK

Query:  TRVSILK
        TRVSILK
Subjt:  TRVSILK

A0A1S3BNF0 Signal recognition particle subunit SRP68

1.7e-46

91.59

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Query:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK
        RAVYEELGKVGDL+NQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHI    GEMEGPAL+LFKAKLEA+M+ ARSQQAVSMTEFHWLGHRFPISNAK
Subjt:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK

Query:  TRVSILK
        TRVSILK
Subjt:  TRVSILK

A0A1S3BP31 Signal recognition particle subunit SRP68

1.7e-46

91.59

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Query:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK
        RAVYEELGKVGDL+NQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHI    GEMEGPAL+LFKAKLEA+M+ ARSQQAVSMTEFHWLGHRFPISNAK
Subjt:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK

Query:  TRVSILK
        TRVSILK
Subjt:  TRVSILK

A0A6J1HMP5 Signal recognition particle subunit SRP68

2.9e-46

90.65

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Query:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK
        RAVYEELGKVGDL+NQVLCRERVEELEPSIRYCLHKIGKSN+QASELLHI    GEMEGPAL+LFKAKLEA+M+ ARSQQAVSMTEFHWLGHRFPISNAK
Subjt:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK

Query:  TRVSILK
        TRVSILK
Subjt:  TRVSILK

A0A6J1HQ31 Signal recognition particle subunit SRP68

2.9e-46

90.65

Show/hide

Query:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK
        RAVYEELGKVGDL+NQVLCRERVEELEPSIRYCLHKIGKSN+QASELLHI    GEMEGPAL+LFKAKLEA+M+ ARSQQAVSMTEFHWLGHRFPISNAK
Subjt:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK

Query:  TRVSILK
        TRVSILK
Subjt:  TRVSILK

SwissProt top hits

e value

%identity

Alignment

Q00004 Signal recognition particle subunit SRP68

1.0e-11

35.85

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Query:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK
        + +YE+L      +  VL  +RVEE+ P+IRYC + IG  +   +EL+ +    G  EG    L   KLEA++T  R++QA +M+E  W G   P+   K
Subjt:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK

Query:  TRVSIL
         R+ +L
Subjt:  TRVSIL

Q8BMA6 Signal recognition particle subunit SRP68

1.0e-11

35.85

Show/hide

Query:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK
        + +YE+L      +  VL  +RVEE+ P+IRYC + IG  +   +EL+ +    G  EG    L   KLEA++T  R++QA +M+E  W G   P+   K
Subjt:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK

Query:  TRVSIL
         R+ +L
Subjt:  TRVSIL

Q9UHB9 Signal recognition particle subunit SRP68

1.0e-11

35.85

Show/hide

Query:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK
        + +YE+L      +  VL  +RVEE+ P+IRYC + IG  +   +EL+ +    G  EG    L   KLEA++T  R++QA +M+E  W G   P+   K
Subjt:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK

Query:  TRVSIL
         R+ +L
Subjt:  TRVSIL

Arabidopsis top hits

e value

%identity

Alignment

AT5G61970.1 signal recognition particle-related / SRP-related

1.3e-43

81.31

Show/hide

Query:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK
        RAVYEELGK GDL+NQVLCRERVEELEPSIRYCLHKIGKSNLQ SELL I    GEMEGPAL+LFKAK+EA M  ARSQQA S+TEF WLG+RFP+SN K
Subjt:  RAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMTEFHWLGHRFPISNAK

Query:  TRVSILK
        +RVSILK
Subjt:  TRVSILK

Sequences

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CDS sequence

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ATGTTTGCAGGCGCCAAGTTCTTCGTCTTCGCAGTTCGCAGTTCGTCGTTCAAGCTGCCGTTCAAGCCACCGTTCAGAGCTGTTTATGAGGAACTTGGGAAAGTAGGAGA
TCTAGATAATCAAGTTTTGTGTCGTGAACGTGTGGAGGAGCTAGAACCTAGTATACGATACTGCTTGCACAAGATTGGCAAGTCAAACCTACAGGCCTCTGAACTTCTAC
ATATTGGGGAGATGGAAGGGGAGATGGAAGGTCCTGCTCTAAACCTCTTCAAAGCTAAATTAGAGGCTATCATGACAGGGGCCAGATCTCAGCAGGCTGTTTCCATGACC
GAGTTTCATTGGCTTGGTCATAGGTTTCCAATATCCAATGCAAAAACTAGAGTTTCCATATTGAAAGGGTTTATTAGTAAATGTTTGATTTCTATGGTCATTGTTAGAGC
TGATGATGCATTGGAGTTGACGAGAGGAATTGCATTTAGCCAATCAGAATTCGATGAGATAAGAGTTGAATTATGTGAATATGTAGCAGGGATGATTGTTTGTTAA

mRNA sequence

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Protein sequence

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MFAGAKFFVFAVRSSSFKLPFKPPFRAVYEELGKVGDLDNQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGEMEGPALNLFKAKLEAIMTGARSQQAVSMT
EFHWLGHRFPISNAKTRVSILKGFISKCLISMVIVRADDALELTRGIAFSQSEFDEIRVELCEYVAGMIVC

Lag0028066 (gene) of Sponge gourd (AG-4) v1 genome