; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028070 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028070
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionF-box domain-containing protein
Genome locationchr8:12373605..12374126
RNA-Seq ExpressionLag0028070
SyntenyLag0028070
Gene Ontology termsGO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0051716 - cellular response to stimulus (biological process)
GO:0019005 - SCF ubiquitin ligase complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily
IPR041567 - COI1, F-box


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571232.1 F-box protein SKIP2, partial [Cucurbita argyrosperma subsp. sororia]1.5e-5780Show/hide
Query:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGL-SSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQ
        MGQFYSS  TSL L +HQQWPPGS +G L SSPL LPST+   EG L+  VD+TF LPDECLAS+FRFLNSGDRKSCSLVCKRWFQVEG+S HRLSLNAQ
Subjt:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGL-SSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQ

Query:  DEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK
        DEI+ FLPS F RF+SVKKLSLRCNRKI+RINDDALILVSIRCR+LTRIK
Subjt:  DEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK

XP_004151915.1 F-box protein SKIP2 [Cucumis sativus]2.1e-6483.65Show/hide
Query:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGLSSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQD
        MGQFYSSAGTS  LN  QQWPPGS IGG SSPLALPSTEQN EG L   VD+TFSLPDECLAS+FRFLNSGDRKSCSLVCKRWFQVEGQS HRLSLNAQD
Subjt:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGLSSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQD

Query:  EIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK-KERLRATEL
        EI+ FLPS FTRF+SVKKLSLRCNRKI+RINDDALILVSIRCRNLTRIK   R + T+L
Subjt:  EIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK-KERLRATEL

XP_008462840.1 PREDICTED: F-box protein SKIP2 [Cucumis melo]1.5e-6285.23Show/hide
Query:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGLSSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQD
        MGQFYSSAGTS  LN  Q+WPPGS IGG SSPLALPSTEQN EG L   VD+TFSLPDECLAS+FRFLNSGDRK CSLVCKRWFQVEGQS HRLSLNAQD
Subjt:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGLSSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQD

Query:  EIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK
        EI+ FLPS FTRF+SVKKLSLRCNRKI+RINDDAL LVSIRCRNLTRIK
Subjt:  EIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK

XP_022986496.1 F-box protein SKIP2-like [Cucurbita maxima]1.1e-5780Show/hide
Query:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGL-SSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQ
        MGQFYSS  TSL L++HQQWPPGSL+G L SSPL LPST+   EG L+  VD+TF LPDECLAS+FRFLNSGDRKSCSLVCKRWFQVE +S HRLSLNAQ
Subjt:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGL-SSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQ

Query:  DEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK
        DEI+ FLPS F RF+SVKKLSLRCNRKI+RINDDALILVSIRCR+LTRIK
Subjt:  DEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK

XP_038901763.1 F-box protein SKIP2-like [Benincasa hispida]1.3e-6183.89Show/hide
Query:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGLSSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQD
        MGQFYSSAGTS  LN  QQWPPGS IGG SSP+ALPSTEQN EG L    D+TFSLPDECLAS+FRFLNSGDRKSCSLVCKRWFQVEGQS HRLSLNAQD
Subjt:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGLSSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQD

Query:  EIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK
        EI+ FLPS F RF+SVKKLSLRCNRKI+ IND+ALILVSIRCRNLTRIK
Subjt:  EIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK

TrEMBL top hitse value%identityAlignment
A0A0A0LQM7 F-box domain-containing protein1.0e-6483.65Show/hide
Query:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGLSSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQD
        MGQFYSSAGTS  LN  QQWPPGS IGG SSPLALPSTEQN EG L   VD+TFSLPDECLAS+FRFLNSGDRKSCSLVCKRWFQVEGQS HRLSLNAQD
Subjt:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGLSSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQD

Query:  EIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK-KERLRATEL
        EI+ FLPS FTRF+SVKKLSLRCNRKI+RINDDALILVSIRCRNLTRIK   R + T+L
Subjt:  EIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK-KERLRATEL

A0A1S3CIC5 F-box protein SKIP27.3e-6385.23Show/hide
Query:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGLSSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQD
        MGQFYSSAGTS  LN  Q+WPPGS IGG SSPLALPSTEQN EG L   VD+TFSLPDECLAS+FRFLNSGDRK CSLVCKRWFQVEGQS HRLSLNAQD
Subjt:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGLSSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQD

Query:  EIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK
        EI+ FLPS FTRF+SVKKLSLRCNRKI+RINDDAL LVSIRCRNLTRIK
Subjt:  EIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK

A0A5A7VE64 F-box protein SKIP27.3e-6385.23Show/hide
Query:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGLSSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQD
        MGQFYSSAGTS  LN  Q+WPPGS IGG SSPLALPSTEQN EG L   VD+TFSLPDECLAS+FRFLNSGDRK CSLVCKRWFQVEGQS HRLSLNAQD
Subjt:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGLSSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQD

Query:  EIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK
        EI+ FLPS FTRF+SVKKLSLRCNRKI+RINDDAL LVSIRCRNLTRIK
Subjt:  EIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK

A0A6J1FUD4 F-box protein SKIP2-like3.5e-5779.33Show/hide
Query:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGL-SSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQ
        MGQFYSS  TSL L +HQQWPPGS +G L SSPL LPS +   EG L+  VD+TF LPDECLAS+FRFLNSGDRKSCSLVCKRWFQVEG+S HRLSLNAQ
Subjt:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGL-SSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQ

Query:  DEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK
        DEI+ FLPS F RF+SVKKLSLRCNRKI+RINDDALILVSIRCR+LTRIK
Subjt:  DEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK

A0A6J1JBA7 F-box protein SKIP2-like5.4e-5880Show/hide
Query:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGL-SSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQ
        MGQFYSS  TSL L++HQQWPPGSL+G L SSPL LPST+   EG L+  VD+TF LPDECLAS+FRFLNSGDRKSCSLVCKRWFQVE +S HRLSLNAQ
Subjt:  MGQFYSSAGTSLPLNNHQQWPPGSLIGGL-SSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQ

Query:  DEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK
        DEI+ FLPS F RF+SVKKLSLRCNRKI+RINDDALILVSIRCR+LTRIK
Subjt:  DEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK

SwissProt top hitse value%identityAlignment
Q9C5D2 F-box/LRR-repeat protein 47.4e-0440Show/hide
Query:  LPDECLASVFRFLNS-GDRKSCSLVCKRWFQVEGQSCHRLSLNAQ---DEIIQFLPSRFTRFNSV
        LP+E +  +FR L S  +R +CSLVCKRW  +E  S   L + A    D+ I  L  RF    S+
Subjt:  LPDECLASVFRFLNS-GDRKSCSLVCKRWFQVEGQSCHRLSLNAQ---DEIIQFLPSRFTRFNSV

Q9C626 F-box protein At1g470567.8e-3059.62Show/hide
Query:  DYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQDEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIKK
        DYT SLPDECLA VF+FLNSG+RK C+LVC+RW  VEGQ+ +RLSL+A+ ++I  +PS F+RF+SV KLSL+C+R+   I D+AL+ +S+RCRNL R+K 
Subjt:  DYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQDEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIKK

Query:  ERLR
           R
Subjt:  ERLR

Q9FE83 F-box protein SKIP22.4e-3164.65Show/hide
Query:  DYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQDEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK
        D+T  LPDECLA VF+FL +GDRK CSLVCKRW  V+GQS HRLSL+A+DEI  FL S F RF+SV KL+LRC+RK   ++D+AL ++S+RC NLTR+K
Subjt:  DYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQDEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK

Q9S9X4 Putative F-box/LRR-repeat protein 86.9e-2655.56Show/hide
Query:  DYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQDEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK
        DY  +LPDECL+ +F+ L   D K CSLVC+RW  +EGQ  HRLSL AQ ++I  +PS FTRF+SV KL LR +R+   I D+A +++S+RCRNLTR+K
Subjt:  DYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQDEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK

Q9SN10 F-box/LRR-repeat protein 165.1e-2957.55Show/hide
Query:  GFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQDEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCR
        GF     D+T +LPD+CLA +F+FL++GDRK CSLV KRW  V+GQ+ HRLSL+A+ EI+ FLP  F RF+SV KL+LRC+R+   ++D+AL +VSIRC 
Subjt:  GFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQDEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCR

Query:  NLTRIK
        NL R+K
Subjt:  NLTRIK

Arabidopsis top hitse value%identityAlignment
AT1G47056.1 VIER F-box proteine 15.6e-3159.62Show/hide
Query:  DYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQDEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIKK
        DYT SLPDECLA VF+FLNSG+RK C+LVC+RW  VEGQ+ +RLSL+A+ ++I  +PS F+RF+SV KLSL+C+R+   I D+AL+ +S+RCRNL R+K 
Subjt:  DYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQDEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIKK

Query:  ERLR
           R
Subjt:  ERLR

AT3G50080.1 VIER F-box proteine 23.6e-3057.55Show/hide
Query:  GFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQDEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCR
        GF     D+T +LPD+CLA +F+FL++GDRK CSLV KRW  V+GQ+ HRLSL+A+ EI+ FLP  F RF+SV KL+LRC+R+   ++D+AL +VSIRC 
Subjt:  GFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQDEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCR

Query:  NLTRIK
        NL R+K
Subjt:  NLTRIK

AT4G07400.1 VIER F-box proteine 34.9e-2755.56Show/hide
Query:  DYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQDEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK
        DY  +LPDECL+ +F+ L   D K CSLVC+RW  +EGQ  HRLSL AQ ++I  +PS FTRF+SV KL LR +R+   I D+A +++S+RCRNLTR+K
Subjt:  DYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQDEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK

AT4G15475.1 F-box/RNI-like superfamily protein5.3e-0540Show/hide
Query:  LPDECLASVFRFLNS-GDRKSCSLVCKRWFQVEGQSCHRLSLNAQ---DEIIQFLPSRFTRFNSV
        LP+E +  +FR L S  +R +CSLVCKRW  +E  S   L + A    D+ I  L  RF    S+
Subjt:  LPDECLASVFRFLNS-GDRKSCSLVCKRWFQVEGQSCHRLSLNAQ---DEIIQFLPSRFTRFNSV

AT5G67250.1 SKP1/ASK1-interacting protein 21.7e-3264.65Show/hide
Query:  DYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQDEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK
        D+T  LPDECLA VF+FL +GDRK CSLVCKRW  V+GQS HRLSL+A+DEI  FL S F RF+SV KL+LRC+RK   ++D+AL ++S+RC NLTR+K
Subjt:  DYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQDEIIQFLPSRFTRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCAGTTTTATTCCTCTGCGGGAACCTCTCTACCGCTCAATAACCATCAGCAATGGCCGCCGGGTTCTCTAATCGGTGGCCTCTCTTCCCCTTTGGCTCTTCCGTC
TACGGAGCAAAACGGTGAGGGATTTTTACATTGTGCTGTCGATTATACTTTTTCTCTTCCCGATGAATGCTTGGCCTCCGTTTTTCGATTCCTCAACTCCGGCGACCGAA
AAAGCTGCTCGTTGGTTTGTAAGCGGTGGTTTCAGGTTGAGGGTCAGAGCTGCCACCGTCTGTCTCTCAATGCTCAGGATGAGATTATCCAATTCCTTCCTTCTCGTTTT
ACTCGATTCAACTCTGTGAAGAAGCTCTCTCTTCGATGCAACCGGAAAATCACTCGAATCAACGACGACGCCTTGATTCTTGTCTCGATCCGTTGCCGGAATCTCACCCG
CATCAAGAAAGAAAGATTAAGGGCAACAGAGTTGGAGAAGAAGATGGTTGAGAAGAAGATTATTGAGGAAGATGATGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCAGTTTTATTCCTCTGCGGGAACCTCTCTACCGCTCAATAACCATCAGCAATGGCCGCCGGGTTCTCTAATCGGTGGCCTCTCTTCCCCTTTGGCTCTTCCGTC
TACGGAGCAAAACGGTGAGGGATTTTTACATTGTGCTGTCGATTATACTTTTTCTCTTCCCGATGAATGCTTGGCCTCCGTTTTTCGATTCCTCAACTCCGGCGACCGAA
AAAGCTGCTCGTTGGTTTGTAAGCGGTGGTTTCAGGTTGAGGGTCAGAGCTGCCACCGTCTGTCTCTCAATGCTCAGGATGAGATTATCCAATTCCTTCCTTCTCGTTTT
ACTCGATTCAACTCTGTGAAGAAGCTCTCTCTTCGATGCAACCGGAAAATCACTCGAATCAACGACGACGCCTTGATTCTTGTCTCGATCCGTTGCCGGAATCTCACCCG
CATCAAGAAAGAAAGATTAAGGGCAACAGAGTTGGAGAAGAAGATGGTTGAGAAGAAGATTATTGAGGAAGATGATGAATAA
Protein sequenceShow/hide protein sequence
MGQFYSSAGTSLPLNNHQQWPPGSLIGGLSSPLALPSTEQNGEGFLHCAVDYTFSLPDECLASVFRFLNSGDRKSCSLVCKRWFQVEGQSCHRLSLNAQDEIIQFLPSRF
TRFNSVKKLSLRCNRKITRINDDALILVSIRCRNLTRIKKERLRATELEKKMVEKKIIEEDDE