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Lag0028110 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028110
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr8:13355832..13356547
RNA-Seq ExpressionLag0028110
SyntenyLag0028110
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4278097.1 unnamed protein product [Prunus armeniaca]4.3e-0641.25Show/hide
Query:  RKVMELALVPFDPEIERTYNKLQRENQEKLIQMANPNP--EEPKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQI
        R+   L L+P DPEIERT +KL +  + K + +  P+P  EEPKP+RDY  P        I +  I+ANNFE++  +I +
Subjt:  RKVMELALVPFDPEIERTYNKLQRENQEKLIQMANPNP--EEPKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQI

KAF5458895.1 hypothetical protein F2P56_022888 [Juglans regia]2.8e-0537.36Show/hide
Query:  MRKVMELALVPFDPEIERTYNKLQRENQEKLIQMANPNPE-EPKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQIARDCDFRGPKL
        MR+     + PFDPEIERT   L+ +  +K++ MA+   + + + ++DY+ PV  +    I    INANNFELK  LI++ +   F G  L
Subjt:  MRKVMELALVPFDPEIERTYNKLQRENQEKLIQMANPNPE-EPKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQIARDCDFRGPKL

KAG7990634.1 hypothetical protein I3843_02G035100 [Carya illinoinensis]1.3e-0740.66Show/hide
Query:  MRKVMELALVPFDPEIERTYNKLQRENQEKLIQMANPNPEE-PKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQIARDCDFRGPKL
        MR+     ++P DPEIERT   L+R    K++ MA  + E  P+ ++DY+ PV       I+  PINANNFELK  LI + +   F G  L
Subjt:  MRKVMELALVPFDPEIERTYNKLQRENQEKLIQMANPNPEE-PKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQIARDCDFRGPKL

WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]1.4e-0950.63Show/hide
Query:  LVPFDPEIERTYNKLQRENQEKLIQMANPNPEEPKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQIARDCDFRG
        L+P DPEI+RTY +  R    +  +MA    E PK IRDY  P     Q  I+  PIN NNFELK GLIQ+AR+  FRG
Subjt:  LVPFDPEIERTYNKLQRENQEKLIQMANPNPEEPKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQIARDCDFRG

XP_038906874.1 uncharacterized protein LOC120092758 [Benincasa hispida]2.9e-0740.23Show/hide
Query:  MRKVMELALVPFDPEIERTYNKLQRENQEKLIQMANPNPEEPKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQIARDCDFRG
        MR++ +  LV +DPE ER   ++ R+ + +   +     E  + IRDY  PV    Q+ I   PINA+NFELK GLIQ+A+D  + G
Subjt:  MRKVMELALVPFDPEIERTYNKLQRENQEKLIQMANPNPEEPKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQIARDCDFRG

TrEMBL top hitse value%identityAlignment
A0A6J0ZX64 LOW QUALITY PROTEIN: uncharacterized protein LOC1104129454.3e-0437.63Show/hide
Query:  MRKVMELALVPFDPEIERTYNKLQREN------QEKLIQMANPN--------PEEPKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQI
        M++   L LVPFDP+IERT+ + +REN       + + +  N N        PE  + +RDY+ P+ Q     I    INANNFE+K   IQ+
Subjt:  MRKVMELALVPFDPEIERTYNKLQREN------QEKLIQMANPN--------PEEPKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQI

A0A6J0ZYV0 uncharacterized protein LOC1104134137.3e-0437.63Show/hide
Query:  MRKVMELALVPFDPEIERTYNKLQREN------QEKLIQMANPN--------PEEPKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQI
        M++   L LVPFDP+IERT+ + +REN       + + +  N N        PE  + +RDY  P+ Q     I    INANNFE+K   IQ+
Subjt:  MRKVMELALVPFDPEIERTYNKLQREN------QEKLIQMANPN--------PEEPKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQI

A0A6J5UQP9 Retrotrans_gag domain-containing protein2.1e-0641.25Show/hide
Query:  RKVMELALVPFDPEIERTYNKLQRENQEKLIQMANPNP--EEPKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQI
        R+   L L+P DPEIERT +KL +  + K + +  P+P  EEPKP+RDY  P        I +  I+ANNFE++  +I +
Subjt:  RKVMELALVPFDPEIERTYNKLQRENQEKLIQMANPNP--EEPKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQI

A0A6P8DLJ8 Reverse transcriptase3.3e-0436.46Show/hide
Query:  MRKVMELALVPFDPEIERTYNKLQRENQEK----LIQMANPNPEE-----PKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQIARDCDFRG
        MR+     L+P DPEIERT ++L+REN+ +    +++MA+ +         + +RDY  P      +     P  ANNFELKS LIQ+ +   F G
Subjt:  MRKVMELALVPFDPEIERTYNKLQRENQEK----LIQMANPNPEE-----PKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQIARDCDFRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAAAGGTTATGGAGTTGGCCTTAGTTCCCTTTGACCCTGAGATAGAGAGGACATATAATAAACTTCAAAGGGAGAATCAAGAAAAACTCATCCAAATGGCCAATCC
TAATCCTGAGGAGCCTAAGCCAATTAGGGACTATCTTCATCCGGTCTTTCAAGAGCAACAATTGGAGATTGTCTATGCCCCGATCAATGCGAATAATTTTGAGCTGAAAA
GTGGTCTCATTCAAATAGCTCGAGATTGTGATTTTAGAGGACCCAAACTCACACTTGAAATCCTTTTTAGATATCTGTGGGACGGCATCGGCCGGAACGCTTGGACATCA
TTTTTGGAGCCAAAAGAATCAAGCAAGAAATTGCAATTTTTGGAGCAACCCGAGAGCAGGCGTCTGGATGCCATGATGGCAGCGTCGAGACGCCAACGCGAGTCTCAACC
CACTGATGGAAGACCTAGCATCGAGACGCTGGCCTTGGTGTCTCGCTGCCAACGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGAAAGGTTATGGAGTTGGCCTTAGTTCCCTTTGACCCTGAGATAGAGAGGACATATAATAAACTTCAAAGGGAGAATCAAGAAAAACTCATCCAAATGGCCAATCC
TAATCCTGAGGAGCCTAAGCCAATTAGGGACTATCTTCATCCGGTCTTTCAAGAGCAACAATTGGAGATTGTCTATGCCCCGATCAATGCGAATAATTTTGAGCTGAAAA
GTGGTCTCATTCAAATAGCTCGAGATTGTGATTTTAGAGGACCCAAACTCACACTTGAAATCCTTTTTAGATATCTGTGGGACGGCATCGGCCGGAACGCTTGGACATCA
TTTTTGGAGCCAAAAGAATCAAGCAAGAAATTGCAATTTTTGGAGCAACCCGAGAGCAGGCGTCTGGATGCCATGATGGCAGCGTCGAGACGCCAACGCGAGTCTCAACC
CACTGATGGAAGACCTAGCATCGAGACGCTGGCCTTGGTGTCTCGCTGCCAACGTTAA
Protein sequenceShow/hide protein sequence
MRKVMELALVPFDPEIERTYNKLQRENQEKLIQMANPNPEEPKPIRDYLHPVFQEQQLEIVYAPINANNFELKSGLIQIARDCDFRGPKLTLEILFRYLWDGIGRNAWTS
FLEPKESSKKLQFLEQPESRRLDAMMAASRRQRESQPTDGRPSIETLALVSRCQR