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Lag0028117 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028117
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionzf-RVT domain-containing protein
Genome locationchr8:13512009..13512386
RNA-Seq ExpressionLag0028117
SyntenyLag0028117
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONK66393.1 uncharacterized protein A4U43_C06F7380 [Asparagus officinalis]2.3e-2040.98Show/hide
Query:  LSAPVKSNCSIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPIS
        L   VK   S+ WR  VW + +L  GMR +VG+G  I++  D WIP+  +F+   I  + I +N  VAD I PS+ WNV  I+      +AN+I +IP+ 
Subjt:  LSAPVKSNCSIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPIS

Query:  AVNEEDRWIWHYSKNGNYTVKS
             D+ +WHY+KNG Y+VKS
Subjt:  AVNEEDRWIWHYSKNGNYTVKS

XP_021801569.1 uncharacterized protein LOC110745747 isoform X1 [Prunus avium]1.9e-1941.59Show/hide
Query:  SIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPISAVNEEDRWI
        S  WR  +W R LL  G+RK +G+G    ++ D WIP   SF+P  I    ++    V+DFI P   WNV  +     +ED   I +IP+S    +DRWI
Subjt:  SIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPISAVNEEDRWI

Query:  WHYSKNGNYTVKS
        WHY+ NG Y+VKS
Subjt:  WHYSKNGNYTVKS

XP_022131662.1 uncharacterized protein LOC111004787 [Momordica charantia]1.7e-2343.9Show/hide
Query:  VLSAPVKSNCSIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPI
        VL A    N S FW+GF+W R LL  G+R +VGNG++I IF D WIP+  SF+P+         ++ VAD I P+  W+V  I     +ED ++I ++P+
Subjt:  VLSAPVKSNCSIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPI

Query:  SAVNEEDRWIWHYSKNGNYTVKS
        S  N  D WIWH+ K G+Y VKS
Subjt:  SAVNEEDRWIWHYSKNGNYTVKS

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.1e-2645.53Show/hide
Query:  VLSAPVKSNCSIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPI
        +L A   S  S FW+GF+W R LL  G+R +VGNG++IK F D W+P+ T+FKPLR     ++    VA FIT    W+V  I +    ED ++I ++PI
Subjt:  VLSAPVKSNCSIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPI

Query:  SAVNEEDRWIWHYSKNGNYTVKS
        S+ N +D W+WHY K GNY+V+S
Subjt:  SAVNEEDRWIWHYSKNGNYTVKS

XP_030505522.1 uncharacterized protein LOC115720515 [Cannabis sativa]1.8e-2037.7Show/hide
Query:  LSAPVKSNCSIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPIS
        L A   S+ S  WRG VW + LL  G+R+++GNGA+ ++F+D WIP+  SF P+   + N+   + V++ I  S  WN+  I    +  D+ +I +IPI+
Subjt:  LSAPVKSNCSIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPIS

Query:  AVNEEDRWIWHYSKNGNYTVKS
            +D W+WH++ +G+Y+VKS
Subjt:  AVNEEDRWIWHYSKNGNYTVKS

TrEMBL top hitse value%identityAlignment
A0A5P1EL44 Uncharacterized protein1.1e-2040.98Show/hide
Query:  LSAPVKSNCSIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPIS
        L   VK   S+ WR  VW + +L  GMR +VG+G  I++  D WIP+  +F+   I  + I +N  VAD I PS+ WNV  I+      +AN+I +IP+ 
Subjt:  LSAPVKSNCSIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPIS

Query:  AVNEEDRWIWHYSKNGNYTVKS
             D+ +WHY+KNG Y+VKS
Subjt:  AVNEEDRWIWHYSKNGNYTVKS

A0A6J1BRN0 uncharacterized protein LOC1110047878.2e-2443.9Show/hide
Query:  VLSAPVKSNCSIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPI
        VL A    N S FW+GF+W R LL  G+R +VGNG++I IF D WIP+  SF+P+         ++ VAD I P+  W+V  I     +ED ++I ++P+
Subjt:  VLSAPVKSNCSIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPI

Query:  SAVNEEDRWIWHYSKNGNYTVKS
        S  N  D WIWH+ K G+Y VKS
Subjt:  SAVNEEDRWIWHYSKNGNYTVKS

A0A6J1DX30 uncharacterized protein LOC1110248741.0e-2645.53Show/hide
Query:  VLSAPVKSNCSIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPI
        +L A   S  S FW+GF+W R LL  G+R +VGNG++IK F D W+P+ T+FKPLR     ++    VA FIT    W+V  I +    ED ++I ++PI
Subjt:  VLSAPVKSNCSIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPI

Query:  SAVNEEDRWIWHYSKNGNYTVKS
        S+ N +D W+WHY K GNY+V+S
Subjt:  SAVNEEDRWIWHYSKNGNYTVKS

A0A6P5RF81 uncharacterized protein LOC110745747 isoform X19.4e-2041.59Show/hide
Query:  SIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPISAVNEEDRWI
        S  WR  +W R LL  G+RK +G+G    ++ D WIP   SF+P  I    ++    V+DFI P   WNV  +     +ED   I +IP+S    +DRWI
Subjt:  SIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPISAVNEEDRWI

Query:  WHYSKNGNYTVKS
        WHY+ NG Y+VKS
Subjt:  WHYSKNGNYTVKS

M5XJH9 Uncharacterized protein (Fragment)9.4e-2040.71Show/hide
Query:  SIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPISAVNEEDRWI
        S FWR  +W   LL  G+RK++G+G    ++ D WIP+  SF+P  I    ++    V+DFI P   WNV  +     +ED   I +IP+S    +DRW+
Subjt:  SIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPISAVNEEDRWI

Query:  WHYSKNGNYTVKS
        WHY+ NG Y+VKS
Subjt:  WHYSKNGNYTVKS

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.8e-0729.03Show/hide
Query:  KSNCSIFWRGF-VWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNIN-----DNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPI
        K + S  WR   +  R ++SHG+    G+G  I+ + D W+    S KPL + + N       D +   D   P +GW+ AKI  + T      + A+ +
Subjt:  KSNCSIFWRGF-VWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNIN-----DNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPI

Query:  SAV-NEEDRWIWHYSKNGNYTVKS
          V    DR  W +S++G ++V+S
Subjt:  SAV-NEEDRWIWHYSKNGNYTVKS

Arabidopsis top hitse value%identityAlignment
AT2G22440.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT4G29090.1)2.9e-0531.03Show/hide
Query:  KIFQDLWIPKETSFKPLRIGMSNINDN-LWVADFITPSKG-WNVAKIKNFVTKEDANVIAAIPISAVNEEDRWIWHYSKNGNYTVKS
        ++++D WIP   + +P +  + NI D+ L+V D I  +   W + +++  +   D  +I  I  S     D + W ++K+GNYTVKS
Subjt:  KIFQDLWIPKETSFKPLRIGMSNINDN-LWVADFITPSKG-WNVAKIKNFVTKEDANVIAAIPISAVNEEDRWIWHYSKNGNYTVKS

AT3G09510.1 Ribonuclease H-like superfamily protein4.8e-0827.56Show/hide
Query:  VLSAPVKSNCSIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKG----WNVAKIKNFVTKEDANVIA
        +L A V+   S  W   +    LL  G R  +G+G +I+I  D  +    S  P  +        + + + +   KG    W+ +KI  FV + D   I 
Subjt:  VLSAPVKSNCSIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKG----WNVAKIKNFVTKEDANVIA

Query:  AIPISAVNEEDRWIWHYSKNGNYTVKS
         I ++   + D+ IW+Y+  G YTV+S
Subjt:  AIPISAVNEEDRWIWHYSKNGNYTVKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTTTTATCTGCCCCTGTTAAATCCAACTGCTCGATTTTCTGGAGAGGATTTGTATGGGCTCGTGGCCTACTTTCCCACGGGATGCGTAAACAAGTTGGCAATGG
AGCATCTATCAAGATTTTCCAAGACCTGTGGATTCCTAAGGAGACTAGTTTTAAACCCCTTCGAATTGGCATGTCCAATATCAACGATAATCTATGGGTCGCGGATTTTA
TAACTCCATCCAAGGGATGGAATGTTGCGAAAATAAAAAATTTCGTAACCAAGGAAGATGCTAATGTAATTGCGGCTATTCCCATCAGCGCTGTTAATGAGGAAGATAGA
TGGATTTGGCATTACTCTAAGAATGGAAATTACACGGTCAAAAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTTTTATCTGCCCCTGTTAAATCCAACTGCTCGATTTTCTGGAGAGGATTTGTATGGGCTCGTGGCCTACTTTCCCACGGGATGCGTAAACAAGTTGGCAATGG
AGCATCTATCAAGATTTTCCAAGACCTGTGGATTCCTAAGGAGACTAGTTTTAAACCCCTTCGAATTGGCATGTCCAATATCAACGATAATCTATGGGTCGCGGATTTTA
TAACTCCATCCAAGGGATGGAATGTTGCGAAAATAAAAAATTTCGTAACCAAGGAAGATGCTAATGTAATTGCGGCTATTCCCATCAGCGCTGTTAATGAGGAAGATAGA
TGGATTTGGCATTACTCTAAGAATGGAAATTACACGGTCAAAAGTTAA
Protein sequenceShow/hide protein sequence
MCVLSAPVKSNCSIFWRGFVWARGLLSHGMRKQVGNGASIKIFQDLWIPKETSFKPLRIGMSNINDNLWVADFITPSKGWNVAKIKNFVTKEDANVIAAIPISAVNEEDR
WIWHYSKNGNYTVKS