; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028118 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028118
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr8:13515457..13517014
RNA-Seq ExpressionLag0028118
SyntenyLag0028118
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH84359.1 zinc CCHC-type-like protein [Trifolium medium]1.2e-1239.13Show/hide
Query:  VEKLGPNLFLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCN
        ++ L  NLFLF   +++E  ++ + GPW FD+ L++L++     +P+ +E   V+FWV  Y+LP++L + +MA +LGN++G FEE D   CN
Subjt:  VEKLGPNLFLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCN

MCH96370.1 hypothetical protein [Trifolium medium]1.6e-1241.3Show/hide
Query:  VEKLGPNLFLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCN
        ++ L  NLFLF   +++E   + R GPW FD+ LL+L++     +P+ +E   V+FWV  Y+LP++L +  MA +LGN +G FEE D   CN
Subjt:  VEKLGPNLFLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCN

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]4.4e-1841.35Show/hide
Query:  SLTVEKLGPNLFLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCNLGWKE
        + +V+ +G N+FLF+     ++ RILR GPW FD+ L+++  P+ + KP  M+F+ V+ WVHF++L +   N +MA RLGN+IG FE+ ++   N  W  
Subjt:  SLTVEKLGPNLFLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCNLGWKE

Query:  SLRV
         LRV
Subjt:  SLRV

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.5e-1835.56Show/hide
Query:  DDILSHWENFNLT----------------LMKKGLRLMSTGKQRKSPADHWVSASLTS------------LTVEKLGPNLFLFSLRSEEEQARILRQGPW
        +++L+ W+ F LT                + ++GL     GK     A   +SA + S            LTVE +G NLFLF    E +  R+++ GPW
Subjt:  DDILSHWENFNLT----------------LMKKGLRLMSTGKQRKSPADHWVSASLTS------------LTVEKLGPNLFLFSLRSEEEQARILRQGPW

Query:  LFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCNLGWKESLRV-VLFSIS
         FDK L+VL KP      + +EF  VAFW+H ++LPM   N +MA RLGN+IG F + D       W  SLR+ VL  I+
Subjt:  LFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCNLGWKESLRV-VLFSIS

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.6e-1540.74Show/hide
Query:  VEKLGPNLFLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCNLGWKESLR
        V+ LG NLFLFS     ++ +I + GPW FD+ L++++KP+ ++ P+ ++F  +  WV F++LP+      MA RLGN++G FEE D    N  W  +LR
Subjt:  VEKLGPNLFLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCNLGWKESLR

Query:  V-VLFSIS
        V V+  IS
Subjt:  V-VLFSIS

TrEMBL top hitse value%identityAlignment
A0A392MB81 Zinc CCHC-type-like protein (Fragment)6.0e-1339.13Show/hide
Query:  VEKLGPNLFLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCN
        ++ L  NLFLF   +++E  ++ + GPW FD+ L++L++     +P+ +E   V+FWV  Y+LP++L + +MA +LGN++G FEE D   CN
Subjt:  VEKLGPNLFLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCN

A0A392N997 DUF4283 domain-containing protein (Fragment)7.8e-1341.3Show/hide
Query:  VEKLGPNLFLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCN
        ++ L  NLFLF   +++E   + R GPW FD+ LL+L++     +P+ +E   V+FWV  Y+LP++L +  MA +LGN +G FEE D   CN
Subjt:  VEKLGPNLFLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCN

A0A6J1BSZ1 uncharacterized protein LOC1110054812.1e-1841.35Show/hide
Query:  SLTVEKLGPNLFLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCNLGWKE
        + +V+ +G N+FLF+     ++ RILR GPW FD+ L+++  P+ + KP  M+F+ V+ WVHF++L +   N +MA RLGN+IG FE+ ++   N  W  
Subjt:  SLTVEKLGPNLFLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCNLGWKE

Query:  SLRV
         LRV
Subjt:  SLRV

A0A6J1DU55 uncharacterized protein LOC1110231357.3e-1935.56Show/hide
Query:  DDILSHWENFNLT----------------LMKKGLRLMSTGKQRKSPADHWVSASLTS------------LTVEKLGPNLFLFSLRSEEEQARILRQGPW
        +++L+ W+ F LT                + ++GL     GK     A   +SA + S            LTVE +G NLFLF    E +  R+++ GPW
Subjt:  DDILSHWENFNLT----------------LMKKGLRLMSTGKQRKSPADHWVSASLTS------------LTVEKLGPNLFLFSLRSEEEQARILRQGPW

Query:  LFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCNLGWKESLRV-VLFSIS
         FDK L+VL KP      + +EF  VAFW+H ++LPM   N +MA RLGN+IG F + D       W  SLR+ VL  I+
Subjt:  LFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCNLGWKESLRV-VLFSIS

A0A6J1DX30 uncharacterized protein LOC1110248747.5e-1640.74Show/hide
Query:  VEKLGPNLFLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCNLGWKESLR
        V+ LG NLFLFS     ++ +I + GPW FD+ L++++KP+ ++ P+ ++F  +  WV F++LP+      MA RLGN++G FEE D    N  W  +LR
Subjt:  VEKLGPNLFLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCNLGWKESLR

Query:  V-VLFSIS
        V V+  IS
Subjt:  V-VLFSIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G31430.1 unknown protein5.3e-0629.11Show/hide
Query:  FLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYD
        F+F+L  EE    +LR+GPW F+ ++++L +     +P    F F+ FWV    +P +  N  +   +G ++G+  + D
Subjt:  FLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYD

AT3G42140.1 zinc ion binding;nucleic acid binding4.1e-0630.38Show/hide
Query:  FSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNG
        F  +SEE    ILR+GPW F+ ++ V+ +  ++   +  EFK + FW+    +P+    A +   +G  +G F E + G
Subjt:  FSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTCATAACCGTCGGAATTTCAGCGTCACAGCCTGGCTGGATGCGTATCTCCCTCCATCAATCCTCATTTCCCTCCAAGATCAATTTCTCCAAGAATCTCGCTG
CTGCATTGTATCCGTAATTTGGCCTAATTACGCTGAGATGTGTGCTTGCGATCGTGGACGGTTTGCTTTCGAGTCTTTAAATGGCACGAAAACATTACCCTCTGTTTCCA
TGGCTCTTGATGATATCCTTAGCCACTGGGAGAATTTCAACCTCACGCTGATGAAGAAGGGACTGAGGTTGATGTCGACCGGCAAGCAGCGGAAGTCACCAGCAGATCAT
TGGGTTTCAGCCTCATTGACGAGCCTTACAGTGGAGAAACTAGGACCAAATCTCTTCCTCTTCTCTCTTCGATCAGAGGAGGAACAGGCTCGTATCCTCCGACAGGGACC
GTGGCTATTTGACAAGTTCCTACTTGTTCTCTCCAAACCTATCCGTATGGTCAAACCAACGGCAATGGAGTTCAAGTTCGTGGCATTCTGGGTGCATTTTTACGAACTCC
CTATGGAATTATTTAATGCCTCCATGGCGGCTCGTCTGGGAAATTCTATAGGACGTTTTGAAGAATATGACAACGGTGGGTGCAATCTTGGTTGGAAGGAGAGTTTGCGT
GTTGTGTTATTCTCGATATCACTAAACCTCTCCAGCGATGTATCAAAGATTGCAGTGCTTACTATATTGTTGCTGGTTCACCCTCTCAATGAAGCAATATGGAACCGGCA
TGGATCTCTGATGACGGACTCTGGCACGAAGTCCATGGACATATCGTCGGCGCCGGTGGAGGTTCAGAACGCGCCACCACCAGCAAAAAATAACGCGCCTCCGCCAACAC
TTAATAGCGAATTTATTCCTGACTTCAATGCATTCAAGGCTGAAGTTAATACGGCTGAGCTGAATGGAAAGTTACCAGAAGATTTAAACCTTCCCCCATTTCAACGGGCT
GAAGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGTTCATAACCGTCGGAATTTCAGCGTCACAGCCTGGCTGGATGCGTATCTCCCTCCATCAATCCTCATTTCCCTCCAAGATCAATTTCTCCAAGAATCTCGCTG
CTGCATTGTATCCGTAATTTGGCCTAATTACGCTGAGATGTGTGCTTGCGATCGTGGACGGTTTGCTTTCGAGTCTTTAAATGGCACGAAAACATTACCCTCTGTTTCCA
TGGCTCTTGATGATATCCTTAGCCACTGGGAGAATTTCAACCTCACGCTGATGAAGAAGGGACTGAGGTTGATGTCGACCGGCAAGCAGCGGAAGTCACCAGCAGATCAT
TGGGTTTCAGCCTCATTGACGAGCCTTACAGTGGAGAAACTAGGACCAAATCTCTTCCTCTTCTCTCTTCGATCAGAGGAGGAACAGGCTCGTATCCTCCGACAGGGACC
GTGGCTATTTGACAAGTTCCTACTTGTTCTCTCCAAACCTATCCGTATGGTCAAACCAACGGCAATGGAGTTCAAGTTCGTGGCATTCTGGGTGCATTTTTACGAACTCC
CTATGGAATTATTTAATGCCTCCATGGCGGCTCGTCTGGGAAATTCTATAGGACGTTTTGAAGAATATGACAACGGTGGGTGCAATCTTGGTTGGAAGGAGAGTTTGCGT
GTTGTGTTATTCTCGATATCACTAAACCTCTCCAGCGATGTATCAAAGATTGCAGTGCTTACTATATTGTTGCTGGTTCACCCTCTCAATGAAGCAATATGGAACCGGCA
TGGATCTCTGATGACGGACTCTGGCACGAAGTCCATGGACATATCGTCGGCGCCGGTGGAGGTTCAGAACGCGCCACCACCAGCAAAAAATAACGCGCCTCCGCCAACAC
TTAATAGCGAATTTATTCCTGACTTCAATGCATTCAAGGCTGAAGTTAATACGGCTGAGCTGAATGGAAAGTTACCAGAAGATTTAAACCTTCCCCCATTTCAACGGGCT
GAAGTGTGA
Protein sequenceShow/hide protein sequence
MAVHNRRNFSVTAWLDAYLPPSILISLQDQFLQESRCCIVSVIWPNYAEMCACDRGRFAFESLNGTKTLPSVSMALDDILSHWENFNLTLMKKGLRLMSTGKQRKSPADH
WVSASLTSLTVEKLGPNLFLFSLRSEEEQARILRQGPWLFDKFLLVLSKPIRMVKPTAMEFKFVAFWVHFYELPMELFNASMAARLGNSIGRFEEYDNGGCNLGWKESLR
VVLFSISLNLSSDVSKIAVLTILLLVHPLNEAIWNRHGSLMTDSGTKSMDISSAPVEVQNAPPPAKNNAPPPTLNSEFIPDFNAFKAEVNTAELNGKLPEDLNLPPFQRA
EV