CuGenDBv2

Gene ID	Lag0028130
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	MYND-type domain-containing protein
Genome location	chr8:13865366..13866356
RNA-Seq Expression	Lag0028130
Synteny	Lag0028130
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR044508 - F-box protein At5g50450/At1g67340-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004154118.1 F-box protein At1g67340 [Cucumis sativus]

1.2e-41

83.33

Show/hide

Query:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA
        GGSKSDKNLR GVALCGRAAY GHIDALRELGHCLQD YGV +N SEGR LLIEANAREL  ITNSSLRRL+CS  R S TDS GSLLSD+GCN PA EA
Subjt:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA

Query:  HPANQFLR
        HPANQFLR
Subjt:  HPANQFLR

XP_008439699.1 PREDICTED: F-box protein At1g67340 [Cucumis melo]

6.9e-42

83.33

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Query:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA
        GGSKSDKNLR GVALCGRAAY GHIDALRELGHCLQD YGV +N SEGR LLIEANAREL  ITNSSLRRL+CS  R S TDS GSLLSD+GCN PA EA
Subjt:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA

Query:  HPANQFLR
        HPANQFLR
Subjt:  HPANQFLR

XP_022955215.1 F-box protein At5g50450 [Cucurbita moschata]

1.5e-41

84.26

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Query:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA
        GGSKSDKNLR GVALCGRAA  GHIDALRELGHCLQD YGVA+N SEGR LLIEANAREL SITNSSLRRLNCS DR + TDS+GSLLSD+G NIPA E 
Subjt:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA

Query:  HPANQFLR
        HPANQFLR
Subjt:  HPANQFLR

XP_022994416.1 F-box protein At5g50450-like [Cucurbita maxima]

6.9e-42

85.19

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Query:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA
        GGSKSDKNLR GVALCGRAA  GHIDALRELGHCLQD YGVA+N SEGR LLIEANAREL SITNSSLRRLNCS DR S TDS+GSLLSD+G NIPA E 
Subjt:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA

Query:  HPANQFLR
        HPANQFLR
Subjt:  HPANQFLR

XP_038894785.1 F-box protein At1g67340 [Benincasa hispida]

3.1e-42

83.33

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Query:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA
        GGSKSDKNLR GVALCGRAAY GHIDALRELGHCLQD YGV +N SEGR LLIEANAREL SITNSSLRRL+CSGD  S  DS GSLLSD+GCN PA EA
Subjt:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA

Query:  HPANQFLR
        HPAN+FLR
Subjt:  HPANQFLR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LTV0 MYND-type domain-containing protein

5.7e-42

83.33

Show/hide

Query:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA
        GGSKSDKNLR GVALCGRAAY GHIDALRELGHCLQD YGV +N SEGR LLIEANAREL  ITNSSLRRL+CS  R S TDS GSLLSD+GCN PA EA
Subjt:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA

Query:  HPANQFLR
        HPANQFLR
Subjt:  HPANQFLR

A0A1S3AZD5 F-box protein At1g67340

3.3e-42

83.33

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Query:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA
        GGSKSDKNLR GVALCGRAAY GHIDALRELGHCLQD YGV +N SEGR LLIEANAREL  ITNSSLRRL+CS  R S TDS GSLLSD+GCN PA EA
Subjt:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA

Query:  HPANQFLR
        HPANQFLR
Subjt:  HPANQFLR

A0A5A7UP50 F-box protein

3.3e-42

83.33

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Query:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA
        GGSKSDKNLR GVALCGRAAY GHIDALRELGHCLQD YGV +N SEGR LLIEANAREL  ITNSSLRRL+CS  R S TDS GSLLSD+GCN PA EA
Subjt:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA

Query:  HPANQFLR
        HPANQFLR
Subjt:  HPANQFLR

A0A6J1GUJ3 F-box protein At5g50450

7.5e-42

84.26

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Query:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA
        GGSKSDKNLR GVALCGRAA  GHIDALRELGHCLQD YGVA+N SEGR LLIEANAREL SITNSSLRRLNCS DR + TDS+GSLLSD+G NIPA E 
Subjt:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA

Query:  HPANQFLR
        HPANQFLR
Subjt:  HPANQFLR

A0A6J1JZ31 F-box protein At5g50450-like

3.3e-42

85.19

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Query:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA
        GGSKSDKNLR GVALCGRAA  GHIDALRELGHCLQD YGVA+N SEGR LLIEANAREL SITNSSLRRLNCS DR S TDS+GSLLSD+G NIPA E 
Subjt:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA

Query:  HPANQFLR
        HPANQFLR
Subjt:  HPANQFLR

SwissProt top hits

e value

%identity

Alignment

Q9FK27 F-box protein At5g50450

2.6e-23

56.48

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Query:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA
        GGSK+DKNLR GVALC R+AY GH+DALRELGHCLQD YGV  + SEGR LLI+ANAREL     S L     SGD           L+D    +P  E 
Subjt:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA

Query:  HPANQFLR
        HP N+FL+
Subjt:  HPANQFLR

Q9FYF9 F-box protein At1g67340

1.2e-28

56.52

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Query:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRR----LNCSGDRLSPTDSAGS----LLSDYG
        GGSK+DK+LR GVALC RAA+ GH+DALRELGHCLQD YGV +N SEGR  L++ANAREL ++ +S ++     L+ S        + G     LLSD+G
Subjt:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRR----LNCSGDRLSPTDSAGS----LLSDYG

Query:  CNIPALEAHPANQFL
        CN+PA E HPAN+FL
Subjt:  CNIPALEAHPANQFL

Arabidopsis top hits

e value

%identity

Alignment

AT1G67340.1 HCP-like superfamily protein with MYND-type zinc finger

8.4e-30

56.52

Show/hide

Query:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRR----LNCSGDRLSPTDSAGS----LLSDYG
        GGSK+DK+LR GVALC RAA+ GH+DALRELGHCLQD YGV +N SEGR  L++ANAREL ++ +S ++     L+ S        + G     LLSD+G
Subjt:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRR----LNCSGDRLSPTDSAGS----LLSDYG

Query:  CNIPALEAHPANQFL
        CN+PA E HPAN+FL
Subjt:  CNIPALEAHPANQFL

AT5G50450.1 HCP-like superfamily protein with MYND-type zinc finger

1.8e-24

56.48

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Query:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA
        GGSK+DKNLR GVALC R+AY GH+DALRELGHCLQD YGV  + SEGR LLI+ANAREL     S L     SGD           L+D    +P  E 
Subjt:  GGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEA

Query:  HPANQFLR
        HP N+FL+
Subjt:  HPANQFLR

Sequences

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CDS sequence

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ATGAATGGTCATCTGCGCGGTGGTTCAAAGAGCGACAAGAATCTCCGTGTTGGTGTGGCTCTGTGCGGACGAGCCGCATATTTCGGCCATATCGACGCGCTTCGTGAACT
AGGCCACTGCCTTCAGGACAGTTACGGCGTCGCTGAAAACACATCCGAGGGACGTTGTCTCCTAATCGAAGCCAACGCGCGTGAGCTCGAGTCCATAACAAACTCCTCCC
TCCGCCGTCTCAACTGCTCGGGCGACCGCCTGTCTCCAACAGATTCCGCCGGATCGCTCCTAAGTGACTACGGCTGCAACATTCCGGCGTTGGAGGCTCATCCGGCAAAC
CAATTTCTAAGGCCCCGTTTGATAACGTTCTCGTTTCCTGTTTCTCGTTTCTCGTTTCTTGTTTCCTGTTTCTTGTTTCTTGTTTTTTAA

mRNA sequence

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Protein sequence

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MNGHLRGGSKSDKNLRVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRCLLIEANARELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN
QFLRPRLITFSFPVSRFSFLVSCFLFLVF

Lag0028130 (gene) of Sponge gourd (AG-4) v1 genome