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Lag0028133 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028133
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr8:13956282..13956668
RNA-Seq ExpressionLag0028133
SyntenyLag0028133
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025354.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-2250Show/hide
Query:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQAN-ETSDPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN
        IW Q+ +P +CG+VI+ENP      S SE++N E   P++MSVM+ D+ T ++RMAELE+KVN+LMK VEERD EIA LKNHIE RD AESS T   KN 
Subjt:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQAN-ETSDPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN

Query:  DKGRL----SYKKTSLSIPLQLLRCLFSNSKI
        +KG+     S  + S SI    ++ L  N ++
Subjt:  DKGRL----SYKKTSLSIPLQLLRCLFSNSKI
KAA0034095.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.3e-2249.62Show/hide
Query:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQAN-ETSDPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN
        IW Q+ +P + G+VI+ENP    + S SE +N E   P++MSVM+ D+ T ++RMAELE+KVNMLMKAVEERD EIA LKNHIE RD AESS T   KN 
Subjt:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQAN-ETSDPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN

Query:  DKGRLSYKKTS-------LSIPLQLLRCLFSNS
        +KG+   +++         S+ +Q L+ + +NS
Subjt:  DKGRLSYKKTS-------LSIPLQLLRCLFSNS
KAA0039052.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.3e-2251.88Show/hide
Query:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQAN-ETSDPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN
        IW Q  +P + G+VI+ENP+     SSSE++N ET  P++MSV+  D+ T   RM ELE+K+NMLMKAVEERD EIASLKNHIE RD AESS T  A N 
Subjt:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQAN-ETSDPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN

Query:  DKGRL----SYKKTSLSIP---LQLLRCLFSNS
        +KG+     S  + S SI    +Q L+ + +NS
Subjt:  DKGRL----SYKKTSLSIP---LQLLRCLFSNS
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]4.3e-2249.62Show/hide
Query:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQAN-ETSDPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN
        IW Q+ +P + G+VI+ENP      S SE++N E   P++MSVM+ D+ T ++RMAELE+KVNMLMKAVEERD EIA LKNHIE RD AESS T   KN 
Subjt:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQAN-ETSDPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN

Query:  DKGRLSYKKTS-------LSIPLQLLRCLFSNS
        +KG+   +++         S+ +Q L+ + +NS
Subjt:  DKGRLSYKKTS-------LSIPLQLLRCLFSNS
KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-2249.62Show/hide
Query:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQANETS-DPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN
        IW Q+ +P + G+VI+ENP      S SE++NE +  P++MSVM+ D+ T ++RMAELE+KVNMLMKAVEERD EIASLKNHIE RD  ESS T + KN 
Subjt:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQANETS-DPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN

Query:  DKGRLSYKKTS-------LSIPLQLLRCLFSNS
        +KG+   +++         S+ +Q L  + +NS
Subjt:  DKGRLSYKKTS-------LSIPLQLLRCLFSNS
TrEMBL top hitse value%identityAlignment
A0A5A7SI89 Ty3-gypsy retrotransposon protein1.2e-2250Show/hide
Query:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQAN-ETSDPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN
        IW Q+ +P +CG+VI+ENP      S SE++N E   P++MSVM+ D+ T ++RMAELE+KVN+LMK VEERD EIA LKNHIE RD AESS T   KN 
Subjt:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQAN-ETSDPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN

Query:  DKGRL----SYKKTSLSIPLQLLRCLFSNSKI
        +KG+     S  + S SI    ++ L  N ++
Subjt:  DKGRL----SYKKTSLSIPLQLLRCLFSNSKI
A0A5A7SY17 Ty3-gypsy retrotransposon protein2.1e-2249.62Show/hide
Query:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQAN-ETSDPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN
        IW Q+ +P + G+VI+ENP    + S SE +N E   P++MSVM+ D+ T ++RMAELE+KVNMLMKAVEERD EIA LKNHIE RD AESS T   KN 
Subjt:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQAN-ETSDPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN

Query:  DKGRLSYKKTS-------LSIPLQLLRCLFSNS
        +KG+   +++         S+ +Q L+ + +NS
Subjt:  DKGRLSYKKTS-------LSIPLQLLRCLFSNS
A0A5A7T6D4 Ty3-gypsy retrotransposon protein2.1e-2251.88Show/hide
Query:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQAN-ETSDPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN
        IW Q  +P + G+VI+ENP+     SSSE++N ET  P++MSV+  D+ T   RM ELE+K+NMLMKAVEERD EIASLKNHIE RD AESS T  A N 
Subjt:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQAN-ETSDPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN

Query:  DKGRL----SYKKTSLSIP---LQLLRCLFSNS
        +KG+     S  + S SI    +Q L+ + +NS
Subjt:  DKGRL----SYKKTSLSIP---LQLLRCLFSNS
A0A5A7TZU9 Ribonuclease H2.1e-2249.62Show/hide
Query:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQAN-ETSDPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN
        IW Q+ +P + G+VI+ENP      S SE++N E   P++MSVM+ D+ T ++RMAELE+KVNMLMKAVEERD EIA LKNHIE RD AESS T   KN 
Subjt:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQAN-ETSDPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN

Query:  DKGRLSYKKTS-------LSIPLQLLRCLFSNS
        +KG+   +++         S+ +Q L+ + +NS
Subjt:  DKGRLSYKKTS-------LSIPLQLLRCLFSNS
A0A5A7U9H0 Ty3-gypsy retrotransposon protein9.3e-2349.62Show/hide
Query:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQANETS-DPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN
        IW Q+ +P + G+VI+ENP      S SE++NE +  P++MSVM+ D+ T ++RMAELE+KVNMLMKAVEERD EIASLKNHIE RD  ESS T + KN 
Subjt:  IWTQMVEPNQCGMVIQENPLFGYFTSSSEQANETS-DPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNN

Query:  DKGRLSYKKTS-------LSIPLQLLRCLFSNS
        +KG+   +++         S+ +Q L  + +NS
Subjt:  DKGRLSYKKTS-------LSIPLQLLRCLFSNS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATGGACCCAGATGGTAGAGCCAAATCAATGTGGAATGGTCATCCAAGAAAATCCTTTATTTGGCTATTTTACTTCATCTTCTGAGCAAGCAAACGAGACATCGGA
TCCTGACGTGATGTCCGTAATGATGGTTGACATAGGTACAGGCAAAGAAAGAATGGCTGAACTGGAAAGAAAGGTCAACATGTTGATGAAGGCAGTTGAAGAGAGAGATT
GTGAAATTGCCTCTCTAAAAAATCACATTGAATGTCGTGATATCGCTGAATCAAGCCAAACACCCGTTGCAAAGAATAATGACAAAGGAAGGTTGTCATACAAGAAAACC
AGCCTCAGCATTCCACTTCAATTGCTTCGCTGTCTGTTCAGCAACTCCAAGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGATATGGACCCAGATGGTAGAGCCAAATCAATGTGGAATGGTCATCCAAGAAAATCCTTTATTTGGCTATTTTACTTCATCTTCTGAGCAAGCAAACGAGACATCGGA
TCCTGACGTGATGTCCGTAATGATGGTTGACATAGGTACAGGCAAAGAAAGAATGGCTGAACTGGAAAGAAAGGTCAACATGTTGATGAAGGCAGTTGAAGAGAGAGATT
GTGAAATTGCCTCTCTAAAAAATCACATTGAATGTCGTGATATCGCTGAATCAAGCCAAACACCCGTTGCAAAGAATAATGACAAAGGAAGGTTGTCATACAAGAAAACC
AGCCTCAGCATTCCACTTCAATTGCTTCGCTGTCTGTTCAGCAACTCCAAGATATGA
Protein sequenceShow/hide protein sequence
MIWTQMVEPNQCGMVIQENPLFGYFTSSSEQANETSDPDVMSVMMVDIGTGKERMAELERKVNMLMKAVEERDCEIASLKNHIECRDIAESSQTPVAKNNDKGRLSYKKT
SLSIPLQLLRCLFSNSKI