; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028146 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028146
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr8:14535443..14538060
RNA-Seq ExpressionLag0028146
SyntenyLag0028146
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-4337.63Show/hide
Query:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE
        +++DLRFVL EECP  P  NAT+  ++ +ERW KANEKAR YILASL+EVL K++E++ T REIM+S+ EMFG   YQ+ HDALKY+YNARM EG  VRE
Subjt:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE

Query:  HVLGMM----------------------------------------------------------------------------------------------
        HVL MM                                                                                              
Subjt:  HVLGMM----------------------------------------------------------------------------------------------

Query:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY
                            K   K  A K  CFHCN +GHWKRNCP+Y   KK+ K+GK+DLLVLET L E+D+ AWI+DSGA  +
Subjt:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-4337.63Show/hide
Query:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE
        +++DLRFVL EECP  P  NAT+  ++ +ERW KANEKAR YILASL+EVL K++E++ T REIM+S+ EMFG   YQ+ HDALKY+YNARM EG  VRE
Subjt:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE

Query:  HVLGMM----------------------------------------------------------------------------------------------
        HVL MM                                                                                              
Subjt:  HVLGMM----------------------------------------------------------------------------------------------

Query:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY
                            K   K  A K  CFHCN +GHWKRNCP+Y   KK+ K+GK+DLLVLET L E+D+ AWI+DSGA  +
Subjt:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-4337.63Show/hide
Query:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE
        +++DLRFVL EECP  P  NAT+  ++ +ERW KANEKAR YILASL+EVL K++E++ T REIM+S+ EMFG   YQ+ HDALKY+YNARM EG  VRE
Subjt:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE

Query:  HVLGMM----------------------------------------------------------------------------------------------
        HVL MM                                                                                              
Subjt:  HVLGMM----------------------------------------------------------------------------------------------

Query:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY
                            K   K  A K  CFHCN +GHWKRNCP+Y   KK+ K+GK+DLLVLET L E+D+ AWI+DSGA  +
Subjt:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-4337.63Show/hide
Query:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE
        +++DLRFVL EECP  P  NAT+  ++ +ERW KANEKAR YILASL+EVL K++E++ T REIM+S+ EMFG   YQ+ HDALKY+YNARM EG  VRE
Subjt:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE

Query:  HVLGMM----------------------------------------------------------------------------------------------
        HVL MM                                                                                              
Subjt:  HVLGMM----------------------------------------------------------------------------------------------

Query:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY
                            K   K  A K  CFHCN +GHWKRNCP+Y   KK+ K+GK+DLLVLET L E+D+ AWI+DSGA  +
Subjt:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-4337.63Show/hide
Query:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE
        +++DLRFVL EECP  P  NAT+  ++ +ERW KANEKAR YILASL+EVL K++E++ T REIM+S+ EMFG   YQ+ HDALKY+YNARM EG  VRE
Subjt:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE

Query:  HVLGMM----------------------------------------------------------------------------------------------
        HVL MM                                                                                              
Subjt:  HVLGMM----------------------------------------------------------------------------------------------

Query:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY
                            K   K  A K  CFHCN +GHWKRNCP+Y   KK+ K+GK+DLLVLET L E+D+ AWI+DSGA  +
Subjt:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein2.5e-4337.63Show/hide
Query:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE
        +++DLRFVL EECP  P  NAT+  ++ +ERW KANEKAR YILASL+EVL K++E++ T REIM+S+ EMFG   YQ+ HDALKY+YNARM EG  VRE
Subjt:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE

Query:  HVLGMM----------------------------------------------------------------------------------------------
        HVL MM                                                                                              
Subjt:  HVLGMM----------------------------------------------------------------------------------------------

Query:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY
                            K   K  A K  CFHCN +GHWKRNCP+Y   KK+ K+GK+DLLVLET L E+D+ AWI+DSGA  +
Subjt:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY

A0A5A7TU93 Gag/pol protein2.5e-4337.63Show/hide
Query:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE
        +++DLRFVL EECP  P  NAT+  ++ +ERW KANEKAR YILASL+EVL K++E++ T REIM+S+ EMFG   YQ+ HDALKY+YNARM EG  VRE
Subjt:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE

Query:  HVLGMM----------------------------------------------------------------------------------------------
        HVL MM                                                                                              
Subjt:  HVLGMM----------------------------------------------------------------------------------------------

Query:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY
                            K   K  A K  CFHCN +GHWKRNCP+Y   KK+ K+GK+DLLVLET L E+D+ AWI+DSGA  +
Subjt:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY

A0A5A7TWB9 Gag/pol protein2.5e-4337.63Show/hide
Query:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE
        +++DLRFVL EECP  P  NAT+  ++ +ERW KANEKAR YILASL+EVL K++E++ T REIM+S+ EMFG   YQ+ HDALKY+YNARM EG  VRE
Subjt:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE

Query:  HVLGMM----------------------------------------------------------------------------------------------
        HVL MM                                                                                              
Subjt:  HVLGMM----------------------------------------------------------------------------------------------

Query:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY
                            K   K  A K  CFHCN +GHWKRNCP+Y   KK+ K+GK+DLLVLET L E+D+ AWI+DSGA  +
Subjt:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY

A0A5D3CPJ6 Gag/pol protein2.5e-4337.63Show/hide
Query:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE
        +++DLRFVL EECP  P  NAT+  ++ +ERW KANEKAR YILASL+EVL K++E++ T REIM+S+ EMFG   YQ+ HDALKY+YNARM EG  VRE
Subjt:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE

Query:  HVLGMM----------------------------------------------------------------------------------------------
        HVL MM                                                                                              
Subjt:  HVLGMM----------------------------------------------------------------------------------------------

Query:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY
                            K   K  A K  CFHCN +GHWKRNCP+Y   KK+ K+GK+DLLVLET L E+D+ AWI+DSGA  +
Subjt:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY

A0A5D3CSZ6 Gag/pol protein2.5e-4337.63Show/hide
Query:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE
        +++DLRFVL EECP  P  NAT+  ++ +ERW KANEKAR YILASL+EVL K++E++ T REIM+S+ EMFG   YQ+ HDALKY+YNARM EG  VRE
Subjt:  MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVRE

Query:  HVLGMM----------------------------------------------------------------------------------------------
        HVL MM                                                                                              
Subjt:  HVLGMM----------------------------------------------------------------------------------------------

Query:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY
                            K   K  A K  CFHCN +GHWKRNCP+Y   KK+ K+GK+DLLVLET L E+D+ AWI+DSGA  +
Subjt:  -------------------GKGKTKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAGGATCTGAGGTTTGTCTTAACGGAGGAATGTCCTCCTGCCCCTCCTCGTAACGCAACGCAAGCTGCAAAAGACGCCCATGAACGTTGGACGAAGGCCAACGA
GAAGGCCCGAGTCTATATATTGGCCAGCTTAAATGAAGTCTTGGTCAAACGTTATGAGACCGTGGAAACGACCAGGGAAATTATGAATTCCATGCCGGAGATGTTTGGAC
TCCCATTCTATCAACTCCACCACGACGCCTTGAAGTATGTCTATAACGCCAGGATGCAAGAGGGACATCCTGTCCGGGAACATGTACTGGGCATGATGGGTAAAGGAAAG
ACCAAGGTCCTTGCCGATAAGGACAGATGCTTCCACTGCAATGTGGATGGTCACTGGAAGCGCAACTGTCCCCGTTACCACACTGCAAAGAAGAGAGAGAAAGAAGGTAA
ATTCGATTTACTAGTTTTAGAAACTTCTCTCGCTGAACATGATGAGTTCGCCTGGATATTAGATTCGGGAGCCGTTAAATACCGGAACGAAGAAAACTTCTTCGTTCAAA
CACGCGAGCAGTGGGTTTCTTCACCCAGGCAGTGGGTTCGATCTAAAACTCCTCCGTCTGGCCGTCGTGGGTTTTGCTCGAGCTATGGGTTTCTTCAGACAGTGGGTTTT
TCGTTGCTGATTTCGTCCAACCGTCGTGGGTTTTTGCGCGAGCTCCACGTCAGCATTCCGTTAGCATTTAACGGCAAAATGGATGGCAGCGACCAAATTGCTCCTTATCT
CAAACCTCAGGGGGATAAGGCTGGGTACCTTATCCTGGTAACACTATGTGATACGACCCGCTTTGTATTCGATACAGACGTATTGATCCAAGGCGTCCATGTAGGAGACA
TGCCAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGATCGGACCACGAAATAGTAAACCACTAGATGTAACACCGTTAACTAGTTATGTTACTGTTTCAATAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAGGATCTGAGGTTTGTCTTAACGGAGGAATGTCCTCCTGCCCCTCCTCGTAACGCAACGCAAGCTGCAAAAGACGCCCATGAACGTTGGACGAAGGCCAACGA
GAAGGCCCGAGTCTATATATTGGCCAGCTTAAATGAAGTCTTGGTCAAACGTTATGAGACCGTGGAAACGACCAGGGAAATTATGAATTCCATGCCGGAGATGTTTGGAC
TCCCATTCTATCAACTCCACCACGACGCCTTGAAGTATGTCTATAACGCCAGGATGCAAGAGGGACATCCTGTCCGGGAACATGTACTGGGCATGATGGGTAAAGGAAAG
ACCAAGGTCCTTGCCGATAAGGACAGATGCTTCCACTGCAATGTGGATGGTCACTGGAAGCGCAACTGTCCCCGTTACCACACTGCAAAGAAGAGAGAGAAAGAAGGTAA
ATTCGATTTACTAGTTTTAGAAACTTCTCTCGCTGAACATGATGAGTTCGCCTGGATATTAGATTCGGGAGCCGTTAAATACCGGAACGAAGAAAACTTCTTCGTTCAAA
CACGCGAGCAGTGGGTTTCTTCACCCAGGCAGTGGGTTCGATCTAAAACTCCTCCGTCTGGCCGTCGTGGGTTTTGCTCGAGCTATGGGTTTCTTCAGACAGTGGGTTTT
TCGTTGCTGATTTCGTCCAACCGTCGTGGGTTTTTGCGCGAGCTCCACGTCAGCATTCCGTTAGCATTTAACGGCAAAATGGATGGCAGCGACCAAATTGCTCCTTATCT
CAAACCTCAGGGGGATAAGGCTGGGTACCTTATCCTGGTAACACTATGTGATACGACCCGCTTTGTATTCGATACAGACGTATTGATCCAAGGCGTCCATGTAGGAGACA
TGCCAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGATCGGACCACGAAATAGTAAACCACTAGATGTAACACCGTTAACTAGTTATGTTACTGTTTCAATAGGATGA
Protein sequenceShow/hide protein sequence
MVEDLRFVLTEECPPAPPRNATQAAKDAHERWTKANEKARVYILASLNEVLVKRYETVETTREIMNSMPEMFGLPFYQLHHDALKYVYNARMQEGHPVREHVLGMMGKGK
TKVLADKDRCFHCNVDGHWKRNCPRYHTAKKREKEGKFDLLVLETSLAEHDEFAWILDSGAVKYRNEENFFVQTREQWVSSPRQWVRSKTPPSGRRGFCSSYGFLQTVGF
SLLISSNRRGFLRELHVSIPLAFNGKMDGSDQIAPYLKPQGDKAGYLILVTLCDTTRFVFDTDVLIQGVHVGDMPAGVSYAMSLHKIGPRNSKPLDVTPLTSYVTVSIG