CuGenDBv2

Gene ID	Lag0028147
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	SUPPRESSOR OF ABI3-5
Genome location	chr8:14548850..14551358
RNA-Seq Expression	Lag0028147
Synteny	Lag0028147
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003723 - RNA binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0046226.1 RNA-binding protein 5-B isoform X2 [Cucumis melo var. makuwa]

6.7e-33

94.05

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Query:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ
        +DL LVRDKFTHVSRGFAFVHFHSVEDA+KALDATNGTTLEKNGQILRVAYAKSILGPGS PSGSS SSSLAAAAIEAATFAQQ
Subjt:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ

XP_011655136.1 SUPPRESSOR OF ABI3-5 isoform X1 [Cucumis sativus]

1.4e-33

95.24

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Query:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ
        +DL LVRDKFTHVSRGFAFVHFHSVEDA+KALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSS SSSLAAAAIEAATFAQQ
Subjt:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ

XP_031741241.1 SUPPRESSOR OF ABI3-5 isoform X2 [Cucumis sativus]

1.4e-33

95.24

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Query:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ
        +DL LVRDKFTHVSRGFAFVHFHSVEDA+KALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSS SSSLAAAAIEAATFAQQ
Subjt:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ

XP_031741242.1 SUPPRESSOR OF ABI3-5 isoform X3 [Cucumis sativus]

1.4e-33

95.24

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Query:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ
        +DL LVRDKFTHVSRGFAFVHFHSVEDA+KALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSS SSSLAAAAIEAATFAQQ
Subjt:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ

XP_038876047.1 LOW QUALITY PROTEIN: SUPPRESSOR OF ABI3-5 [Benincasa hispida]

1.4e-33

95.24

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Query:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ
        +DL LVRDKFTHVSRGFAFVHFHSVEDA+KALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSS SSSLAAAAIEAATFAQQ
Subjt:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KR81 Uncharacterized protein

6.5e-34

95.24

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Query:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ
        +DL LVRDKFTHVSRGFAFVHFHSVEDA+KALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSS SSSLAAAAIEAATFAQQ
Subjt:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ

A0A1S4E414 SUPPRESSOR OF ABI3-5

3.2e-33

94.05

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Query:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ
        +DL LVRDKFTHVSRGFAFVHFHSVEDA+KALDATNGTTLEKNGQILRVAYAKSILGPGS PSGSS SSSLAAAAIEAATFAQQ
Subjt:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ

A0A5D3D622 RNA-binding protein 5-B isoform X2

3.2e-33

94.05

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Query:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ
        +DL LVRDKFTHVSRGFAFVHFHSVEDA+KALDATNGTTLEKNGQILRVAYAKSILGPGS PSGSS SSSLAAAAIEAATFAQQ
Subjt:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ

A0A6J1GW06 SUPPRESSOR OF ABI3-5 isoform X1

5.5e-33

94.05

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Query:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ
        +DL LVRDKFTHVSRGFAFVHFHSVEDA+KALDATNGTTLEKNGQILRVAYAKSILG GSGPSGSS SSSLAAAAIEAATFAQQ
Subjt:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ

A0A6J1JH15 SUPPRESSOR OF ABI3-5 isoform X1

5.5e-33

94.05

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Query:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ
        +DL LVRDKFTHVSRGFAFVHFHSVEDA+KALDATNGTTLEKNGQILRVAYAKSILG GSGPSGSS SSSLAAAAIEAATFAQQ
Subjt:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ

SwissProt top hits

e value

%identity

Alignment

F4JCU0 SUPPRESSOR OF ABI3-5

3.3e-27

76.19

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Query:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ
        +DL LVRDKFTHVSRGFAFVHF+SVEDA+KAL+ATN T LE+NG+ILRVAYAKS+ G G+G S  S S++LAAAAIEAATF+QQ
Subjt:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ

P30352 Serine/arginine-rich splicing factor 2

1.2e-05

48.08

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Query:  DLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAK
        D+++ RD++T  SRGFAFV FH   DA  A+DA +G  L+  G+ LRV  A+
Subjt:  DLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAK

Q01130 Serine/arginine-rich splicing factor 2

1.2e-05

48.08

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Query:  DLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAK
        D+++ RD++T  SRGFAFV FH   DA  A+DA +G  L+  G+ LRV  A+
Subjt:  DLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAK

Q3MHR5 Serine/arginine-rich splicing factor 2

1.2e-05

48.08

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Query:  DLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAK
        D+++ RD++T  SRGFAFV FH   DA  A+DA +G  L+  G+ LRV  A+
Subjt:  DLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAK

Q62093 Serine/arginine-rich splicing factor 2

1.2e-05

48.08

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Query:  DLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAK
        D+++ RD++T  SRGFAFV FH   DA  A+DA +G  L+  G+ LRV  A+
Subjt:  DLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAK

Arabidopsis top hits

e value

%identity

Alignment

AT3G54230.1 suppressor of abi3-5

2.4e-28

76.19

Show/hide

Query:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ
        +DL LVRDKFTHVSRGFAFVHF+SVEDA+KAL+ATN T LE+NG+ILRVAYAKS+ G G+G S  S S++LAAAAIEAATF+QQ
Subjt:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ

AT3G54230.2 suppressor of abi3-5

2.4e-28

76.19

Show/hide

Query:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ
        +DL LVRDKFTHVSRGFAFVHF+SVEDA+KAL+ATN T LE+NG+ILRVAYAKS+ G G+G S  S S++LAAAAIEAATF+QQ
Subjt:  QDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQ

AT5G59860.1 RNA-binding (RRM/RBD/RNP motifs) family protein

2.4e-04

40.74

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Query:  LVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGP
        L++D+ T   +GF F+ F S +DA KAL A NG  +  NG+++ V  AK +  P
Subjt:  LVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGP

Sequences

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CDS sequence

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ATGAGAAATTTTGGAGTTCGATACGACAAGAACCGTGGTGGTGTTGGTGTGTGTTTGGTTTATGCTCATCAGGATCTCCATTTGGTTAGAGACAAATTCACTCATGTTTC
TAGAGGGTTTGCATTTGTTCATTTCCATTCGGTGGAGGATGCTAGCAAAGCTCTTGATGCCACAAATGGCACAACCCTCGAGAAGAATGGACAAATTTTACGAGTAGCAT
ATGCTAAGAGCATTCTTGGTCCAGGATCAGGACCGTCTGGATCTTCACTGTCTAGCAGCCTTGCAGCTGCTGCAATTGAGGCTGCAACGTTTGCCCAGCAGACAATTGTA
AGGCCTACCAAAGTCAATGTTGATGCTCCGAAGTTGGTCATCAACCTTCTCTCTTCTTACAAGGTACCAGTTAAGCTATGTATTTTGCTGATCTTATATTCATCAGTTGT
CATCCACTACTTCTATGGGATATGGTTTACTATTTTCTGA

mRNA sequence

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Protein sequence

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MRNFGVRYDKNRGGVGVCLVYAHQDLHLVRDKFTHVSRGFAFVHFHSVEDASKALDATNGTTLEKNGQILRVAYAKSILGPGSGPSGSSLSSSLAAAAIEAATFAQQTIV
RPTKVNVDAPKLVINLLSSYKVPVKLCILLILYSSVVIHYFYGIWFTIF

Lag0028147 (gene) of Sponge gourd (AG-4) v1 genome