CuGenDBv2

Gene ID	Lag0028170
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Ribonuclease H
Genome location	chr8:14846417..14846980
RNA-Seq Expression	Lag0028170
Synteny	Lag0028170
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]

5.6e-87

86.1

Show/hide

Query:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA
        MNGAVEAANKNIKRI+EKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGME VLP+EV+IPSLRVLMEA ++EAEW++ RYEQL FVEEKRL A
Subjt:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA

Query:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY
         +  QLYQRR+MRAY+KKV PR FREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGAL+LTN+DG EL +PVNSDYVR+YY
Subjt:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]

7.3e-87

86.1

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Query:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA
        MNGAVEAANKNIKRIVEKMT+TY+DWHEMLPFALHGYRTSVRTSTGATPFSLVYGME VLPIEV+IPSLRV+MEA ++EAEWVQ RYEQL FVEEKRLTA
Subjt:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA

Query:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY
          RGQLYQRRMM+AYDKKV  RRFREGDLVLKRILP QKDHRGKWTPNYEGPFV+KKAFSGGAL+L N+DG E  +P+NSD+VRKYY
Subjt:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY

XP_031737561.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402452 [Cucumis sativus]

1.2e-86

85.03

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Query:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA
        MNGAVEAANKNIKRI+EKMT TYKDWHE+LPFALHGYRTSVRTSTGATPFSLVYGME VLP+EV+IPSLRVLMEA ++EAEW++ RYEQL F+EEKRLTA
Subjt:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA

Query:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY
         S GQLYQ+R+MRAY+KKV PR FREGDLVLKRILPF KDHRGKWTPNYEGPFVVKKAFSGGAL+LTN+DG EL +PVNSDYVR+YY
Subjt:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]

1.2e-86

85.03

Show/hide

Query:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA
        MNGAVEAANKNIKRI+EKMT TYKDWHE+LPFALHGYRTSVRTSTGATPFSLVYGME VLP+EV+IPSLRVLMEA ++EAEW++ RYEQL F+EEKRLTA
Subjt:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA

Query:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY
         S GQLYQ+R+MRAY+KKV PR FREGDLVLKRILPF KDHRGKWTPNYEGPFVVKKAFSGGAL+LTN+DG EL +PVNSDYVR+YY
Subjt:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY

XP_031741309.1 LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus]

1.2e-86

85.03

Show/hide

Query:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA
        MNGAVEAANKNIKRI+EKMT TYKDWHE+LPFALHGYRTSVRTSTGATPFSLVYGME VLP+EV+IPSLRVLMEA ++EAEW++ RYEQL F+EEKRLTA
Subjt:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA

Query:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY
         S GQLYQ+R+MRAY+KKV PR FREGDLVLKRILPF KDHRGKWTPNYEGPFVVKKAFSGGAL+LTN+DG EL +PVNSDYVR+YY
Subjt:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T7R4 Ribonuclease H

2.7e-87

86.1

Show/hide

Query:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA
        MNGAVEAANKNIKRI+EKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGME VLP+EV+IPSLRVLMEA ++EAEW++ RYEQL FVEEKRL A
Subjt:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA

Query:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY
         +  QLYQRR+MRAY+KKV PR FREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGAL+LTN+DG EL +PVNSDYVR+YY
Subjt:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY

A0A6J1D099 Ribonuclease H

5.1e-86

85.56

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Query:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA
        MNGAVEAANKNIKRIVEKMT+TY+DWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEV+IPSLRV+MEA ++EAEWVQ RYEQL FVEEKRLTA
Subjt:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA

Query:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY
          R QLYQRRMM+AYDKKV PRRF+E DLVLKRILP QKDHRGKWTPNYEGPFVVKKAFSGGAL+L N+DG E  +PV +D+VRKYY
Subjt:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY

A0A6J1D7C7 Ribonuclease H

3.5e-87

86.1

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Query:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA
        MNGAVEAANKNIKRIVEKMT+TY+DWHEMLPFALHGYRTSVRTSTGATPFSLVYGME VLPIEV+IPSLRV+MEA ++EAEWVQ RYEQL FVEEKRLTA
Subjt:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA

Query:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY
          RGQLYQRRMM+AYDKKV  RRFREGDLVLKRILP QKDHRGKWTPNYEGPFV+KKAFSGGAL+L N+DG E  +P+NSD+VRKYY
Subjt:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY

A0A6J1DZ90 Ribonuclease H

1.5e-85

86.1

Show/hide

Query:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA
        MNGAVEAANKNIKRIVEKMT+TY DWHEMLPFALHGYRTSVRTSTG TPFSLVYGMEVVL IEV+IPSLRV+MEA +  AEWVQ RYEQL FVEEKRLTA
Subjt:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA

Query:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY
          RGQLYQRRMM+AYD+KV PRRFREGDLVLKRILP QKDHRGKWTPNYEGPFVVKKAFSGGAL+L N+DG E  +PVNSD+VRKYY
Subjt:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY

A0A6J1E2J7 Ribonuclease H

2.3e-86

86.1

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Query:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA
        MNGAVEAANKNIKRIVEKMT+TY+DWHEMLPFALHGYRTSVRTSTGATPFSLVYGM+ VLPIEV+IPSLRV+MEA ++EAEWVQ RYEQL FVEEKRLTA
Subjt:  MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEA-MEEAEWVQNRYEQLKFVEEKRLTA

Query:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY
          RGQLYQRRMM+AYDKKV PRRFREGDLVLK ILP QKDHRGKWT NYEGPFVVKKAFSGGAL+L N+DG E  +PVNSD+VRKYY
Subjt:  FSRGQLYQRRMMRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAATGGGGCTGTTGAAGCTGCAAACAAAAACATAAAAAGAATTGTTGAAAAGATGACTATAACGTACAAAGATTGGCATGAAATGCTCCCCTTCGCTCTACACGGCTA
TCGCACGTCAGTTCGTACATCAACTGGGGCAACGCCTTTTTCCTTAGTATATGGTATGGAGGTTGTGCTCCCAATTGAGGTGAAAATTCCATCGCTAAGAGTTCTTATGG
AAGCTATGGAAGAGGCTGAATGGGTCCAGAATCGCTATGAACAGCTCAAATTCGTTGAAGAGAAGAGATTAACAGCATTTAGTAGAGGTCAACTCTATCAAAGAAGGATG
ATGAGAGCATATGATAAGAAAGTTCGCCCAAGAAGATTTAGAGAGGGAGATCTGGTGTTGAAAAGGATCCTTCCATTTCAAAAGGATCATCGAGGAAAATGGACTCCAAA
TTATGAAGGACCATTTGTGGTGAAAAAGGCTTTCTCTGGTGGGGCATTAATCTTAACCAATATCGATGGATGTGAATTATCAAGCCCAGTCAATTCAGACTATGTTCGGA
AGTATTATACATAG

mRNA sequence

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Protein sequence

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MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPIEVKIPSLRVLMEAMEEAEWVQNRYEQLKFVEEKRLTAFSRGQLYQRRM
MRAYDKKVRPRRFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALILTNIDGCELSSPVNSDYVRKYYT

Lag0028170 (gene) of Sponge gourd (AG-4) v1 genome