; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028184 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028184
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr8:15059893..15061278
RNA-Seq ExpressionLag0028184
SyntenyLag0028184
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN60536.1 hypothetical protein VITISV_010581 [Vitis vinifera]2.6e-2336.7Show/hide
Query:  KIEDLTAKEHIHWHQRCKLQWLNQDDENTKSFHRILAAKRKNMIFEILD-------------------------------------------SEVTDYRP
        ++E+L  +E IHW Q  K++W+   D N+  FH++   +R     + L+                                           SE    RP
Subjt:  KIEDLTAKEHIHWHQRCKLQWLNQDDENTKSFHRILAAKRKNMIFEILD-------------------------------------------SEVTDYRP

Query:  ISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAKG
        ISLI C YK+IA+VLS RL  VL  TI   Q TFV  RQILD  LI NE++D+ + S ++GV+ K++ EKA+D V WDFLD VL  KG
Subjt:  ISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAKG

CAN67047.1 hypothetical protein VITISV_001152 [Vitis vinifera]2.0e-3137.05Show/hide
Query:  ESRRFLRE-KIEDLTAKEHIHWHQRCKLQWLNQDDENTKSFHRILAAKRKNMIFEILDSE----------------------------------------
        E +R LR+ ++E+L  +E  HW Q+ +++W+ + D N+K FH++   +R     ++L++E                                        
Subjt:  ESRRFLRE-KIEDLTAKEHIHWHQRCKLQWLNQDDENTKSFHRILAAKRKNMIFEILDSE----------------------------------------

Query:  -VTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAK-GNWPT
         ++DYRPISLI   YKIIA+VLS RL  VL  TI   Q  FV  +QILD  LIANE++D+ + S ++GV+ K++ EKA+D      L  +L  K  +WP 
Subjt:  -VTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAK-GNWPT

Query:  PYLGVPLGGNPKNLSFWQPVIEKL
         YLG+PLGGNPK   FW PVIE++
Subjt:  PYLGVPLGGNPKNLSFWQPVIEKL

CAN77234.1 hypothetical protein VITISV_010061 [Vitis vinifera]3.1e-2451.18Show/hide
Query:  LDSEVTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAKGN-
        L   ++D+RPISLI   YKIIA+VLS RL  VL  TI   Q  FV  RQILD  LIANE++D+ + S ++GVI K++ EKA+D      L  +L  K + 
Subjt:  LDSEVTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAKGN-

Query:  WPTPYLGVPLGGNPKNLSFWQPVIEKL
        WP  YLG+PLG NPK   FW PVIE++
Subjt:  WPTPYLGVPLGGNPKNLSFWQPVIEKL

KAA0045138.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.0e-2335.85Show/hide
Query:  MAHKESRR--FLREKIEDLTAKEHIHWHQRCKLQWLNQDDENTKSFHRILAAKRK-NMIFEILD------------------------------------
        +  +ES R   L+  + +L+ KE   W+QR K  WL + DEN+  FHRI ++++K + I EI D                                    
Subjt:  MAHKESRR--FLREKIEDLTAKEHIHWHQRCKLQWLNQDDENTKSFHRILAAKRK-NMIFEILD------------------------------------

Query:  -----------------------SEVTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELE
                               S   D+RPISL    YKIIA+ LS+RL   LP TI  NQ+ FV NRQI D  L+ANE +D WK+ K KG I+KL++E
Subjt:  -----------------------SEVTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELE

Query:  KAFDKVDWDFLD
        KAFD ++WDF+D
Subjt:  KAFDKVDWDFLD

RVW89552.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]9.0e-2439.88Show/hide
Query:  RRFLREKIEDLTAKEHIHWHQRCKLQWLNQDDENTK---------------SFHRI-LAAKRKNMIFEIL------DSEVTDYRPISLIPCAYKIIARVL
        R F + ++E+L  +E IHW Q+ +++W+ + D N+                 FHR  +  +  N  F +L         ++D+RPISLI   YKIIA+VL
Subjt:  RRFLREKIEDLTAKEHIHWHQRCKLQWLNQDDENTK---------------SFHRI-LAAKRKNMIFEIL------DSEVTDYRPISLIPCAYKIIARVL

Query:  SSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAKG
        + RL  VL  TI   Q  FV  RQILD  LIANE++D+ + + ++GV+ K++ EKA+D V WDFLD VL  KG
Subjt:  SSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAKG

TrEMBL top hitse value%identityAlignment
A0A438HYP2 LINE-1 retrotransposable element ORF2 protein4.4e-2439.88Show/hide
Query:  RRFLREKIEDLTAKEHIHWHQRCKLQWLNQDDENTK---------------SFHRI-LAAKRKNMIFEIL------DSEVTDYRPISLIPCAYKIIARVL
        R F + ++E+L  +E IHW Q+ +++W+ + D N+                 FHR  +  +  N  F +L         ++D+RPISLI   YKIIA+VL
Subjt:  RRFLREKIEDLTAKEHIHWHQRCKLQWLNQDDENTK---------------SFHRI-LAAKRKNMIFEIL------DSEVTDYRPISLIPCAYKIIARVL

Query:  SSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAKG
        + RL  VL  TI   Q  FV  RQILD  LIANE++D+ + + ++GV+ K++ EKA+D V WDFLD VL  KG
Subjt:  SSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAKG

A0A5A7TQI1 LINE-1 retrotransposable element ORF2 protein9.7e-2435.85Show/hide
Query:  MAHKESRR--FLREKIEDLTAKEHIHWHQRCKLQWLNQDDENTKSFHRILAAKRK-NMIFEILD------------------------------------
        +  +ES R   L+  + +L+ KE   W+QR K  WL + DEN+  FHRI ++++K + I EI D                                    
Subjt:  MAHKESRR--FLREKIEDLTAKEHIHWHQRCKLQWLNQDDENTKSFHRILAAKRK-NMIFEILD------------------------------------

Query:  -----------------------SEVTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELE
                               S   D+RPISL    YKIIA+ LS+RL   LP TI  NQ+ FV NRQI D  L+ANE +D WK+ K KG I+KL++E
Subjt:  -----------------------SEVTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELE

Query:  KAFDKVDWDFLD
        KAFD ++WDF+D
Subjt:  KAFDKVDWDFLD

A5ARB2 Reverse transcriptase domain-containing protein9.7e-3237.05Show/hide
Query:  ESRRFLRE-KIEDLTAKEHIHWHQRCKLQWLNQDDENTKSFHRILAAKRKNMIFEILDSE----------------------------------------
        E +R LR+ ++E+L  +E  HW Q+ +++W+ + D N+K FH++   +R     ++L++E                                        
Subjt:  ESRRFLRE-KIEDLTAKEHIHWHQRCKLQWLNQDDENTKSFHRILAAKRKNMIFEILDSE----------------------------------------

Query:  -VTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAK-GNWPT
         ++DYRPISLI   YKIIA+VLS RL  VL  TI   Q  FV  +QILD  LIANE++D+ + S ++GV+ K++ EKA+D      L  +L  K  +WP 
Subjt:  -VTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAK-GNWPT

Query:  PYLGVPLGGNPKNLSFWQPVIEKL
         YLG+PLGGNPK   FW PVIE++
Subjt:  PYLGVPLGGNPKNLSFWQPVIEKL

A5BSG1 Uncharacterized protein1.5e-2451.18Show/hide
Query:  LDSEVTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAKGN-
        L   ++D+RPISLI   YKIIA+VLS RL  VL  TI   Q  FV  RQILD  LIANE++D+ + S ++GVI K++ EKA+D      L  +L  K + 
Subjt:  LDSEVTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAKGN-

Query:  WPTPYLGVPLGGNPKNLSFWQPVIEKL
        WP  YLG+PLG NPK   FW PVIE++
Subjt:  WPTPYLGVPLGGNPKNLSFWQPVIEKL

A5BZE1 Uncharacterized protein1.3e-2339.33Show/hide
Query:  LDSEVTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAKG--
        L   ++++RPISLI   YKII +VLS RL  VL  TI   Q  FV  RQILD  LIANE++D+ + S ++GV+ K++ EKA+D V WDFLD VL  KG  
Subjt:  LDSEVTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAKG--

Query:  --------------------------------------------------NWPTPYLGVPLGGNPKNLSFWQPVIEKL
                                                           WP  YLG+PLGGNPK   FW PVIE++
Subjt:  --------------------------------------------------NWPTPYLGVPLGGNPKNLSFWQPVIEKL

SwissProt top hitse value%identityAlignment
P11369 LINE-1 retrotransposable element ORF2 protein3.7e-0430.19Show/hide
Query:  SEVTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQ-ILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAKGNWP
        +++ ++RPISL+    KI+ ++L++R+   +   I  +Q+ F+   Q   ++    N +    K+  K  +II L+ EKAFDK+   F+  VL   G   
Subjt:  SEVTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQ-ILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAKGNWP

Query:  TPYLGV
         PYL +
Subjt:  TPYLGV

P14381 Transposon TX1 uncharacterized 149 kDa protein1.2e-0532.61Show/hide
Query:  VTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHA
        + ++RP+SL+   YKI+A+ +S RL  VL   I  +Q   V  R I D   +  +++   + +      + L+ EKAFD+VD  +L   L A
Subjt:  VTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHA

Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases8.5e-0432Show/hide
Query:  RLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGV----IIKLELEKAFDKVDWDFLDAVLHAKG
        RL  ++ + I   Q +F+  R   D  +   E +   +  +KKGV    ++KL+LEKA+D++ WD+L+  L + G
Subjt:  RLMYVLPHTIVENQMTFVANRQILDVSLIANEVIDDWKISKKKGV----IIKLELEKAFDKVDWDFLDAVLHAKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGCAATGATAATTTCTCAATGGCACATAAGGAATCACGACGCTTTTTACGAGAAAAGATTGAAGATTTGACAGCAAAAGAGCATATCCATTGGCATCAACGATG
TAAATTACAATGGCTTAATCAGGATGATGAAAATACTAAATCCTTCCATCGTATTTTAGCAGCCAAGAGGAAAAATATGATTTTTGAGATTCTCGATAGTGAAGTGACAG
ACTATCGACCTATTAGTCTTATCCCCTGCGCTTACAAGATTATTGCTAGAGTTTTGTCTAGTAGATTAATGTATGTTCTGCCTCATACTATTGTTGAGAATCAAATGACC
TTTGTTGCCAATAGACAAATATTGGATGTTTCTTTAATTGCCAATGAAGTGATTGATGATTGGAAGATCTCCAAAAAGAAAGGTGTGATTATTAAACTGGAGTTGGAAAA
AGCTTTTGACAAAGTGGATTGGGATTTTCTGGATGCAGTTTTACATGCAAAAGGTAATTGGCCTACACCTTATCTTGGAGTTCCCTTAGGTGGAAATCCAAAGAACTTGT
CCTTTTGGCAACCTGTGATTGAAAAGCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGCAATGATAATTTCTCAATGGCACATAAGGAATCACGACGCTTTTTACGAGAAAAGATTGAAGATTTGACAGCAAAAGAGCATATCCATTGGCATCAACGATG
TAAATTACAATGGCTTAATCAGGATGATGAAAATACTAAATCCTTCCATCGTATTTTAGCAGCCAAGAGGAAAAATATGATTTTTGAGATTCTCGATAGTGAAGTGACAG
ACTATCGACCTATTAGTCTTATCCCCTGCGCTTACAAGATTATTGCTAGAGTTTTGTCTAGTAGATTAATGTATGTTCTGCCTCATACTATTGTTGAGAATCAAATGACC
TTTGTTGCCAATAGACAAATATTGGATGTTTCTTTAATTGCCAATGAAGTGATTGATGATTGGAAGATCTCCAAAAAGAAAGGTGTGATTATTAAACTGGAGTTGGAAAA
AGCTTTTGACAAAGTGGATTGGGATTTTCTGGATGCAGTTTTACATGCAAAAGGTAATTGGCCTACACCTTATCTTGGAGTTCCCTTAGGTGGAAATCCAAAGAACTTGT
CCTTTTGGCAACCTGTGATTGAAAAGCTTTAG
Protein sequenceShow/hide protein sequence
MEGNDNFSMAHKESRRFLREKIEDLTAKEHIHWHQRCKLQWLNQDDENTKSFHRILAAKRKNMIFEILDSEVTDYRPISLIPCAYKIIARVLSSRLMYVLPHTIVENQMT
FVANRQILDVSLIANEVIDDWKISKKKGVIIKLELEKAFDKVDWDFLDAVLHAKGNWPTPYLGVPLGGNPKNLSFWQPVIEKL