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Lag0028211 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028211
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr8:15546026..15546352
RNA-Seq ExpressionLag0028211
SyntenyLag0028211
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VVA38592.1 PREDICTED: reverse mRNAase, partial [Prunus dulcis]2.3e-1339.05Show/hide
Query:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQE-ATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQI
        +P   +   D +VW  D+ G F VKSAYR+A++  S  E  + S NS  + L   +WN+NV  + K+ AW++ +DI+PTK  ++KK VD+   C FC  I
Subjt:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQE-ATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQI

Query:  LKTQL
         ++ L
Subjt:  LKTQL

XP_011459636.1 PREDICTED: uncharacterized protein LOC105350012 [Fragaria vesca subsp. vesca]2.7e-0928.85Show/hide
Query:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQEATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQIL
        +P  +++  D+ +W  D+KG F VKSAY +A            + S  A L N +WN+ V  + K+C WK+ ++I+P+++ + ++ +D+++ C FC + +
Subjt:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQEATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQIL

Query:  KTQL
        ++ +
Subjt:  KTQL

XP_022149515.1 uncharacterized protein LOC111017927 [Momordica charantia]1.9e-1035.19Show/hide
Query:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQEATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQIL
        +P    N  DE++W  D+K  F VKS YRL +  AS+ E   S++ ++A     LW + V  + K+C W+I NDII T   + KK + +   C FC +  
Subjt:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQEATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQIL

Query:  KTQLFHTF
        +    H F
Subjt:  KTQLFHTF

XP_024190158.1 uncharacterized protein LOC112194141 [Rosa chinensis]3.2e-1034.62Show/hide
Query:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQEATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQIL
        +P   +N +D  +W  D+KG F VKSAY +A     +  +T  + S  A+L   LWNS V    KVCAWK  ++++PT++ + ++ +DL++ C  C + +
Subjt:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQEATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQIL

Query:  KTQL
        +T +
Subjt:  KTQL

XP_040374850.1 uncharacterized protein LOC112200370 [Rosa chinensis]1.1e-1034.62Show/hide
Query:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQEATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQIL
        +P   +N +D  +W  D++G F VKSAY +A     +  +T  + S  A+L + LWNS V    KVCAWK V++++PT++ + ++ +DL++ C  C + +
Subjt:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQEATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQIL

Query:  KTQL
        +T +
Subjt:  KTQL

TrEMBL top hitse value%identityAlignment
A0A5E4GGB8 PREDICTED: reverse mRNAase (Fragment)1.1e-1339.05Show/hide
Query:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQE-ATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQI
        +P   +   D +VW  D+ G F VKSAYR+A++  S  E  + S NS  + L   +WN+NV  + K+ AW++ +DI+PTK  ++KK VD+   C FC  I
Subjt:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQE-ATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQI

Query:  LKTQL
         ++ L
Subjt:  LKTQL

A0A6J1D5Y4 uncharacterized protein LOC1110179279.0e-1135.19Show/hide
Query:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQEATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQIL
        +P    N  DE++W  D+K  F VKS YRL +  AS+ E   S++ ++A     LW + V  + K+C W+I NDII T   + KK + +   C FC +  
Subjt:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQEATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQIL

Query:  KTQLFHTF
        +    H F
Subjt:  KTQLFHTF

M5VU98 Reverse transcriptase domain-containing protein7.4e-1338.1Show/hide
Query:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQE-ATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQI
        +P   +   D +VW  D+ G F VKSAYR+A++  S  E  + S NS    L   +WN+ V  + K+ AW++ +DI+PTK  ++KK VD+   C FC  I
Subjt:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQE-ATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQI

Query:  LKTQL
         ++ L
Subjt:  LKTQL

M5XHI9 Reverse transcriptase domain-containing protein7.4e-1338.1Show/hide
Query:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQE-ATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQI
        +P   +   D +VW  D+ G F VKSAYR+A++  S  E  + S NS    L   +WN+ V  + K+ AW++ +DI+PTK  ++KK VD+   C FC  I
Subjt:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQE-ATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQI

Query:  LKTQL
         ++ L
Subjt:  LKTQL

M5XK32 Reverse transcriptase domain-containing protein (Fragment)5.6e-1338.1Show/hide
Query:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQE-ATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQI
        +P   +   D +VW  D+ G F VKSAYR+A++  S  E  + S NS  + L   +WN+ V  + K+ AW++ +DI+PTK  ++KK VD+   C FC  I
Subjt:  MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQE-ATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQI

Query:  LKTQL
         ++ L
Subjt:  LKTQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAACGGGAAACAAAAATACAAAGGATGAAATGGTTTGGCAACTCGACCAGAAGGGAGATTTTTTCGTGAAGAGTGCCTATCGCTTAGCTATGAAAGAGGCCTCCTC
CCAAGAAGCCACACAATCGGATAATAGCAAGGATGCAGCTCTTTGTAATAGCCTATGGAATTCAAATGTGTTTCCTCGTGCTAAAGTGTGTGCGTGGAAGATTGTAAATG
ACATCATCCCAACAAAGACCTACATTCTCAAGAAGAGAGTGGATCTTAACTCTTCCTGTTATTTCTGTTCTCAAATACTTAAAACACAACTTTTTCATACTTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAACGGGAAACAAAAATACAAAGGATGAAATGGTTTGGCAACTCGACCAGAAGGGAGATTTTTTCGTGAAGAGTGCCTATCGCTTAGCTATGAAAGAGGCCTCCTC
CCAAGAAGCCACACAATCGGATAATAGCAAGGATGCAGCTCTTTGTAATAGCCTATGGAATTCAAATGTGTTTCCTCGTGCTAAAGTGTGTGCGTGGAAGATTGTAAATG
ACATCATCCCAACAAAGACCTACATTCTCAAGAAGAGAGTGGATCTTAACTCTTCCTGTTATTTCTGTTCTCAAATACTTAAAACACAACTTTTTCATACTTTCTAG
Protein sequenceShow/hide protein sequence
MPTGNKNTKDEMVWQLDQKGDFFVKSAYRLAMKEASSQEATQSDNSKDAALCNSLWNSNVFPRAKVCAWKIVNDIIPTKTYILKKRVDLNSSCYFCSQILKTQLFHTF