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Lag0028249 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028249
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr8:16323545..16324547
RNA-Seq ExpressionLag0028249
SyntenyLag0028249
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034962.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-2173.33Show/hide
Query:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
        Y VGIVS+YQSNP+ DHW TVKNILKYLRR ++YMLVY +KD ILTG TD+NF+TDKD RKSTS SV TL  GA+
Subjt:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
KAA0043583.1 putative Integrase core domain [Cucumis melo var. makuwa]1.1e-2074.67Show/hide
Query:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
        YAVGIVS+YQSNP  DHW  VK ILKYLRR R+YMLVYE KDLILTG TD++F+TDKD RKSTS SV TL  GA+
Subjt:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
KAA0061170.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-2174.67Show/hide
Query:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
        YAVGIVS+YQSNP  DHW TVK ILKYLRR R+YMLVY  KDLILTG TD++F+TDKD RKSTS SV TL +GA+
Subjt:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
KAA0062410.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-2174.67Show/hide
Query:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
        YAVGIVS+YQSNP  DHW TVK I KYLRR R+YMLVYE KDLILTG TD++F+TDKD RKSTS SV TL  GA+
Subjt:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
TYK27801.1 gag/pol protein [Cucumis melo var. makuwa]6.7e-2169.33Show/hide
Query:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
        ++VG++S+YQSNP  DHW TVKNILKYL+R ++YML+Y TKDLILTG TD+NF+TDKD RKSTS SV TL +GA+
Subjt:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
TrEMBL top hitse value%identityAlignment
A0A5A7TJH9 Putative Integrase core domain5.5e-2174.67Show/hide
Query:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
        YAVGIVS+YQSNP  DHW  VK ILKYLRR R+YMLVYE KDLILTG TD++F+TDKD RKSTS SV TL  GA+
Subjt:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
A0A5A7V1F5 Gag/pol protein2.5e-2174.67Show/hide
Query:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
        YAVGIVS+YQSNP  DHW TVK ILKYLRR R+YMLVY  KDLILTG TD++F+TDKD RKSTS SV TL +GA+
Subjt:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
A0A5D3DCF0 Gag/pol protein2.5e-2173.33Show/hide
Query:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
        Y VGIVS+YQSNP+ DHW TVKNILKYLRR ++YMLVY +KD ILTG TD+NF+TDKD RKSTS SV TL  GA+
Subjt:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
A0A5D3DS50 Gag/pol protein2.5e-2174.67Show/hide
Query:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
        YAVGIVS+YQSNP  DHW TVK I KYLRR R+YMLVYE KDLILTG TD++F+TDKD RKSTS SV TL  GA+
Subjt:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
A0A5D3DVT2 Gag/pol protein3.2e-2169.33Show/hide
Query:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
        ++VG++S+YQSNP  DHW TVKNILKYL+R ++YML+Y TKDLILTG TD+NF+TDKD RKSTS SV TL +GA+
Subjt:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-0841.11Show/hide
Query:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI---GKWWKCNGYSDT
        +AVG+VS++  NP  +HW+ VK IL+YLR      L +   D IL G TD +   D D RKS++  + T   GAI    K  KC   S T
Subjt:  YAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAI---GKWWKCNGYSDT
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACGAATGCCCTATGCAGTAGGGATTGTCAGTAAGTATCAATCTAATCCAAAATTTGATCACTGGAAAACCGTTAAGAATATCCTCAAGTATCTGAGGAGAAAGAG
AAACTATATGCTCGTGTATGAGACTAAGGATTTGATCCTTACAGGAAACACTGACACGAATTTTAAGACTGATAAGGATTTGAGGAAATCTACATCAGTATCTGTGGTCA
CTCTTTACGATGGAGCTATAGGCAAGTGGTGGAAATGTAATGGGTATAGTGATACAATTATAGACGACGCTGACCAAATCTGTGAAGAAATCAACGTCGCGACCAGCCTG
AACGTGAACCCACTGCTACGCCATGCCGCCTTGCTCAAACGTTGTTGTACCGTCGTGACGCCGCCGGAGAAGACGCACAATGGTTGTTGTTGCCCGGAGAGAATCGTAGC
CGGAGTTAAGAGAGAGAAGGAGTTGTCGTCAAGTAAGGAAGAAGGAAGAAGAAGAATTAGAAAAAACTTGGCTTGGCTTATGGCTCCGTGCGGTCTTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGACGAATGCCCTATGCAGTAGGGATTGTCAGTAAGTATCAATCTAATCCAAAATTTGATCACTGGAAAACCGTTAAGAATATCCTCAAGTATCTGAGGAGAAAGAG
AAACTATATGCTCGTGTATGAGACTAAGGATTTGATCCTTACAGGAAACACTGACACGAATTTTAAGACTGATAAGGATTTGAGGAAATCTACATCAGTATCTGTGGTCA
CTCTTTACGATGGAGCTATAGGCAAGTGGTGGAAATGTAATGGGTATAGTGATACAATTATAGACGACGCTGACCAAATCTGTGAAGAAATCAACGTCGCGACCAGCCTG
AACGTGAACCCACTGCTACGCCATGCCGCCTTGCTCAAACGTTGTTGTACCGTCGTGACGCCGCCGGAGAAGACGCACAATGGTTGTTGTTGCCCGGAGAGAATCGTAGC
CGGAGTTAAGAGAGAGAAGGAGTTGTCGTCAAGTAAGGAAGAAGGAAGAAGAAGAATTAGAAAAAACTTGGCTTGGCTTATGGCTCCGTGCGGTCTTAAATAA
Protein sequenceShow/hide protein sequence
MRRMPYAVGIVSKYQSNPKFDHWKTVKNILKYLRRKRNYMLVYETKDLILTGNTDTNFKTDKDLRKSTSVSVVTLYDGAIGKWWKCNGYSDTIIDDADQICEEINVATSL
NVNPLLRHAALLKRCCTVVTPPEKTHNGCCCPERIVAGVKREKELSSSKEEGRRRIRKNLAWLMAPCGLK