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Lag0028254 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028254
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr8:16664651..16665076
RNA-Seq ExpressionLag0028254
SyntenyLag0028254
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFS44309.1 hypothetical protein Acr_00g0089600 [Actinidia rufa]1.2e-2559.78Show/hide
Query:  SWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVMREIHEGVCGNHSGARTLCHKIVRQGYYWLTM
        +W+D +IDYL K  +P ++++A++LQ R++ F + EG+LYKRSFS  LLRCL P + EYV+REIHEGVCGNHSGAR+L  K +RQGY+W TM
Subjt:  SWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVMREIHEGVCGNHSGARTLCHKIVRQGYYWLTM

XP_022156986.1 uncharacterized protein LOC111023816 [Momordica charantia]8.3e-2756.38Show/hide
Query:  ETSWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVMREIHEGVCGNHSGARTLCHKIVRQGYYWLTM
        + +WMDP+ D+L    VP +  +A+KL+R+A+H++++EGKL+KR +S+ LLRCL P +  YVMREIHEGVCGNH GA+++  K+VRQGYYWLT+
Subjt:  ETSWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVMREIHEGVCGNHSGARTLCHKIVRQGYYWLTM

XP_022158215.1 uncharacterized protein LOC111024751 [Momordica charantia]4.1e-2656.52Show/hide
Query:  SWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVMREIHEGVCGNHSGARTLCHKIVRQGYYWLTM
        +WMDP+ D+L    +P +  +A+KL+R+A+H++++EGKL+KR +S+ LLRCL P +  YVMREIHEGVCGNH GAR++  K+VRQGYYW T+
Subjt:  SWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVMREIHEGVCGNHSGARTLCHKIVRQGYYWLTM

XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]2.4e-2653.64Show/hide
Query:  EDASTIEAEPSPIARETSWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVMREIHEGVCGNHSGARTLCHKIV
        ++A  I+ +  P   E +W  PLI YL+   +P E++EA++LQRRA+ ++L++  LYK  +S+ LL+CL P++ +YVMREIHEGVCG+HSGAR+L HKI+
Subjt:  EDASTIEAEPSPIARETSWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVMREIHEGVCGNHSGARTLCHKIV

Query:  RQGYYWLTML
        RQGYYW TML
Subjt:  RQGYYWLTML

XP_038973062.1 uncharacterized protein LOC103706605 [Phoenix dactylifera]7.0e-2650.83Show/hide
Query:  VPEAEAPLAEEDASTIEAEPS-PIARETSWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVMREIHEGVCGNH
        +P+A A    +  ST E EP+  I  E SWMD L++YL+   +P +  EA++++R A+ ++L EGKLY+RSF+  LLRCL P + +Y MRE+HEG+CGNH
Subjt:  VPEAEAPLAEEDASTIEAEPS-PIARETSWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVMREIHEGVCGNH

Query:  SGARTLCHKIVRQGYYWLTM
         G R L HKI+RQGYYW T+
Subjt:  SGARTLCHKIVRQGYYWLTM

TrEMBL top hitse value%identityAlignment
A0A2N9F5L1 RNase H domain-containing protein2.4e-2749.62Show/hide
Query:  TEAEGLVPEAEAPLAEEDASTIE------AEPSPIARETSWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVM
        TEA+ L   A +  A++   T++       E +PI  E SWM P+I YL+   +P  R EA++L+ RAS F++ +G LYKR FS+  LRCL P++  YVM
Subjt:  TEAEGLVPEAEAPLAEEDASTIE------AEPSPIARETSWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVM

Query:  REIHEGVCGNHSGARTLCHKIVRQGYYWLTM
        REIHEG+CGNHSGAR L  K+VR GYYW +M
Subjt:  REIHEGVCGNHSGARTLCHKIVRQGYYWLTM

A0A2N9H2N6 Reverse transcriptase1.4e-2750.77Show/hide
Query:  EAEGLVPEAEAPLAEE-----DASTIEA-EPSPIARETSWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVMR
        EA+ L   A +  A++     + S+++A E +P+  ETSWM P+I YL++  +P  R EA++L+ RAS F++ +G LYKRSFS+  LRCL P++  YVMR
Subjt:  EAEGLVPEAEAPLAEE-----DASTIEA-EPSPIARETSWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVMR

Query:  EIHEGVCGNHSGARTLCHKIVRQGYYWLTM
        EIHEG+CG+HSGAR L  KIVR GYYWL++
Subjt:  EIHEGVCGNHSGARTLCHKIVRQGYYWLTM

A0A2N9HNF1 Ribonuclease H1.8e-2748.85Show/hide
Query:  TEAEGLVPEAEAPLAEEDASTIE------AEPSPIARETSWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVM
        TEA+ L   A +  A++    ++      AE +P+  E SWM P+I YL++  +P  R EA++L+ RAS F++ +G LYKR FS+  LRCL P++  YVM
Subjt:  TEAEGLVPEAEAPLAEEDASTIE------AEPSPIARETSWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVM

Query:  REIHEGVCGNHSGARTLCHKIVRQGYYWLTM
        REIHEG+CG+HSGAR L  KIVR GYYW +M
Subjt:  REIHEGVCGNHSGARTLCHKIVRQGYYWLTM

A0A2N9HRX3 Ribonuclease H8.1e-2848.85Show/hide
Query:  TEAEGLVPEAEAPLAEEDASTIE------AEPSPIARETSWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVM
        TEA+ L   A +  +++    ++       E +P+  ETSWM P+I YL++  +P  R EA++L+ RAS F++ +G LYKRSFS+  LRCL P++  YV+
Subjt:  TEAEGLVPEAEAPLAEEDASTIE------AEPSPIARETSWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVM

Query:  REIHEGVCGNHSGARTLCHKIVRQGYYWLTM
        REIHEGVCGNHSGAR L  K+VR GYYW +M
Subjt:  REIHEGVCGNHSGARTLCHKIVRQGYYWLTM

A0A2N9IXT4 Ribonuclease H1.1e-2750.38Show/hide
Query:  TEAEGLVPEAEAPLAEEDASTIE------AEPSPIARETSWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVM
        TEA+ LV  A +  A++    ++       E +P+  ETSWM P+I YL+   +P  R EA++L+ RAS F++ +G LYKRSFS+  LRCL P++  YVM
Subjt:  TEAEGLVPEAEAPLAEEDASTIE------AEPSPIARETSWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVM

Query:  REIHEGVCGNHSGARTLCHKIVRQGYYWLTM
        REIHEG+CG+HSGAR L  KIVR GYYW +M
Subjt:  REIHEGVCGNHSGARTLCHKIVRQGYYWLTM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGAGGCCATGGATCCGGTACATGAGGTCGAGGCTCCCGTGACAGAGGCCGAGGGTCTAGTACCCGAGGCCGAGGCTCCTTTGGCTGAGGAAGATGCCTCGACAAT
TGAAGCTGAACCCTCCCCAATAGCAAGAGAGACCTCGTGGATGGACCCGCTCATTGACTATTTGGAGAAGAGTGAGGTGCCAATAGAGAGGATGGAGGCTAAAAAACTAC
AAAGGCGAGCATCACATTTTATGCTAAGAGAAGGGAAGTTATACAAGAGGAGCTTCTCGATGTCGTTGCTGAGGTGCCTTCCCCCAAATGACGTAGAATATGTGATGAGG
GAGATACATGAAGGGGTGTGTGGCAACCACTCAGGAGCAAGGACCTTATGCCATAAAATTGTCAGACAAGGTTATTACTGGCTGACAATGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAGAGGCCATGGATCCGGTACATGAGGTCGAGGCTCCCGTGACAGAGGCCGAGGGTCTAGTACCCGAGGCCGAGGCTCCTTTGGCTGAGGAAGATGCCTCGACAAT
TGAAGCTGAACCCTCCCCAATAGCAAGAGAGACCTCGTGGATGGACCCGCTCATTGACTATTTGGAGAAGAGTGAGGTGCCAATAGAGAGGATGGAGGCTAAAAAACTAC
AAAGGCGAGCATCACATTTTATGCTAAGAGAAGGGAAGTTATACAAGAGGAGCTTCTCGATGTCGTTGCTGAGGTGCCTTCCCCCAAATGACGTAGAATATGTGATGAGG
GAGATACATGAAGGGGTGTGTGGCAACCACTCAGGAGCAAGGACCTTATGCCATAAAATTGTCAGACAAGGTTATTACTGGCTGACAATGTTGTAG
Protein sequenceShow/hide protein sequence
MVEAMDPVHEVEAPVTEAEGLVPEAEAPLAEEDASTIEAEPSPIARETSWMDPLIDYLEKSEVPIERMEAKKLQRRASHFMLREGKLYKRSFSMSLLRCLPPNDVEYVMR
EIHEGVCGNHSGARTLCHKIVRQGYYWLTML