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Lag0028271 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028271
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr8:17415924..17417188
RNA-Seq ExpressionLag0028271
SyntenyLag0028271
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN83427.1 hypothetical protein VITISV_009103 [Vitis vinifera]1.5e-4840.08Show/hide
Query:  FLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGFGN-----MARLGKIATHP--------------------------
        F+  RQILDA LIA+E++D+ K S ++GVV K+D EKA+D V WDFLD V++ KGF +     M   G     P                          
Subjt:  FLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGFGN-----MARLGKIATHP--------------------------

Query:  ----IGTSSLHVTHLQFVDDTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGCRLGDWPTTYLGLPLGGNPKLRSFW
            +G +   VTHLQF DDT+LF       +  L  ++ +F + SGL +N  KS L GIN+D  ++        C+  DWP  YLGLPLGGNP    FW
Subjt:  ----IGTSSLHVTHLQFVDDTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGCRLGDWPTTYLGLPLGGNPKLRSFW

Query:  HPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFW
         PVIERI ++L  W+ +Y+S GGR TL+ + LS++P Y+ S +K+P+ V   +++I RDF W
Subjt:  HPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFW

RVW53981.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]3.0e-4937.12Show/hide
Query:  IDWSRISEAQVSTLEVPFTDDEV-------YIAIQSLGSNG-FLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGF--
        IDW+ ISE     L+ PF+++EV        +     GS G F+  RQILDA LIA+E++D+ + S ++GVV K+D EKA+D V+W FLD V+Q KGF  
Subjt:  IDWSRISEAQVSTLEVPFTDDEV-------YIAIQSLGSNG-FLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGF--

Query:  --------------------GN----------------------------MARL-------GKIATHPIGTSSLHVTHLQFVDDTLLFFTSNASAVDKLF
                            GN                            ++RL       G      +G     V+ LQF DDT+ F  ++   +  L 
Subjt:  --------------------GN----------------------------MARL-------GKIATHPIGTSSLHVTHLQFVDDTLLFFTSNASAVDKLF

Query:  DIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGCRLGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMP
         I+ +F + SGL IN  KS + GIN   + +        CR+ +WP +YLGLPLGGNPK   FW PV+ERI ++L  WK +Y S GGR TLIQ+ LS++P
Subjt:  DIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGCRLGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMP

Query:  IYYLSLYKLPSKVVKVLDKIIRDFFW
         Y+LSL+K+P  +   ++K+ RDF W
Subjt:  IYYLSLYKLPSKVVKVLDKIIRDFFW

RVW71380.1 putative ribonuclease H protein [Vitis vinifera]5.1e-4938.57Show/hide
Query:  IDWSRISEAQVSTLEVPFTDDEVYIAI------QSLGSNG------FLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVD---W-------
        +DWS ISE    +L  PFT++E+  AI      ++ G +G      F+  RQI+DA LIA+E++D+ + S ++GVV K+D EKA+D V    W       
Subjt:  IDWSRISEAQVSTLEVPFTDDEVYIAI------QSLGSNG------FLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVD---W-------

Query:  -------DFLDVVVQVKGFGNMARL---GKIATHPIGTSSLHVTHLQFVDDTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEV
                FL  +V       + R      +    +G +   V+HLQF DDT+ F  +    +  L  ++  F   SGL +N  KS + GIN+D  +M  
Subjt:  -------DFLDVVVQVKGFGNMARL---GKIATHPIGTSSLHVTHLQFVDDTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEV

Query:  FTSKFGCRLGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFW
             GC+   WP  YLGLPLGGNP+   FW PVIERI ++L  W+ +Y+S GGR TLI + L++MP YYLSL+KLP+ V   ++++ RDF W
Subjt:  FTSKFGCRLGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFW

VVA31869.1 Hypothetical predicted protein, partial [Prunus dulcis]2.1e-5039.02Show/hide
Query:  SLGSNGFLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGFGNMARLGKIATHPI------------------------
        S     F+  RQILDA L+A+E++++ +  N+KG+V K+D EKA+D V+W+F+D V+  KGFG  A  G     P+                        
Subjt:  SLGSNGFLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGFGNMARLGKIATHPI------------------------

Query:  ------GTSSLHVTHLQFVDDTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGCRLGDWPTTYLGLPLGGNPKLRSF
              G   + V+HLQF DDT+ F          L  ++K+F   SG+ IN  KS +LGIN   + +      +GC +G WP  YLGLPLGGNP+  +F
Subjt:  ------GTSSLHVTHLQFVDDTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGCRLGDWPTTYLGLPLGGNPKLRSF

Query:  WHPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFWE
        W+PV+++++K+L  WK + +SKGGR TLIQA LS++P YY+SL+K+P  V   +++++R+F WE
Subjt:  WHPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFWE

XP_009335445.1 PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri]2.3e-4936.71Show/hide
Query:  GFLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGFGN-----------------------------------------
        GF+  RQILDA LIA+EL+++ +   ++G++ K+D EKA+D V+W FLD ++Q KGFGN                                         
Subjt:  GFLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGFGN-----------------------------------------

Query:  ---------MARLGKIATH-------PIGTSSLHVTHLQFVDDTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGCR
                 ++RL + A          IG   + ++HLQF DDT+ F   +    + L +++ +F   SGL IN  K  + GIN D + ++     +GC 
Subjt:  ---------MARLGKIATH-------PIGTSSLHVTHLQFVDDTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGCR

Query:  LGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFWE
        +G WP  YLGLPLGG PK   FW PV+E+++K+L SWK +++SKGGR TLIQ  L ++PIYY+SL+K+P  V+  L+K+++ F WE
Subjt:  LGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFWE

TrEMBL top hitse value%identityAlignment
A0A803P465 Uncharacterized protein1.4e-5237.63Show/hide
Query:  NGFLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGFGNMAR-------------------------------------
        + F+  RQILD+ LIA+E ++D++   + G+V K+D EKA+D+V+W+F+DVV+  KGFG + R                                     
Subjt:  NGFLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGFGNMAR-------------------------------------

Query:  --------------------LGKIATHPIGTSSLHVTHLQFVDDTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGC
                             G I+   +G   + V+HLQF DDT +FF  N  ++ KL  +++ F   SGL IN  KS+LLGI +D++ +     + GC
Subjt:  --------------------LGKIATHPIGTSSLHVTHLQFVDDTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGC

Query:  RLGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFWE
         +G WP  YLG+PLGG+P+  SFW PV+++  K+L  WK +++SKGGR TLIQ+ LS++P+Y+LSL+K P  V K L+K++RDF WE
Subjt:  RLGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFWE

A0A803P8A0 Uncharacterized protein3.3e-5439.02Show/hide
Query:  NGFLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGFGNMAR-------------------------------------
        + F+  RQILD+ L+A+E ++D++   KKG V+K+D EKA+D+VDW FLD+V++ KGFG   R                                     
Subjt:  NGFLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGFGNMAR-------------------------------------

Query:  ----------LGKI----------ATHPIGTSSLHVTHLQFVDDTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGC
                  LG++          +   IG  ++ ++HLQF DDT LFF  +  ++ KL  I++ F   SGL +N  KS+LLGI + D+ +    +  GC
Subjt:  ----------LGKI----------ATHPIGTSSLHVTHLQFVDDTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGC

Query:  RLGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFWE
         +G WP TYLG+PLGG+P+ ++FW PV+++  K++  WK S++S+GGR TLIQ+ LS++PIYYLSL+K+P  V+K L+K++RDFFWE
Subjt:  RLGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFWE

A0A803PZS1 Uncharacterized protein1.4e-5745.49Show/hide
Query:  FLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGFGNMARL----------------GKIATHPIGTSSLHVTHLQFVD
        F+  RQILD+ LIA+E +++++   KKG V K+DLEKA+D VDWDFLD+V++ KGFG + R                 G+      G  ++ ++HLQF D
Subjt:  FLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGFGNMARL----------------GKIATHPIGTSSLHVTHLQFVD

Query:  DTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGCRLGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSWKYSYI
        DT LFF  + +++ KL +I++ F   S L +N  KS+LLGI ++++ +   T   GC++G WP TYLG+PLGG+P+   FW PV+++  K+L  WK S++
Subjt:  DTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGCRLGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSWKYSYI

Query:  SKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFWE
        S+GGR TLIQ+ LS++PIYYLSL+K P  V+K ++K++RDFFWE
Subjt:  SKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFWE

A0A803QI00 Uncharacterized protein2.5e-5438.68Show/hide
Query:  NGFLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGFGNMAR-------------------------------------
        + F+  RQILD+ LIA+E ++D++   KKG V K+DLEKA+D+VDWDFLD+V++ KGFG + R                                     
Subjt:  NGFLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGFGNMAR-------------------------------------

Query:  ----------LGKI----------ATHPIGTSSLHVTHLQFVDDTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGC
                  LG++          +   +G  ++ ++HLQF DDT LFF  + +++ KL +I++ F   SGL +N  KS+LLGI+++++ +       GC
Subjt:  ----------LGKI----------ATHPIGTSSLHVTHLQFVDDTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGC

Query:  RLGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFWE
         +G WP TYLG+PLGG+P+  +FW PV+++  K+L  WK S++S+GGR  LIQ+ LS++PIYYLSL+K P  V++ ++K++RDFFWE
Subjt:  RLGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFWE

A0A803QQM3 Uncharacterized protein7.4e-5439.72Show/hide
Query:  NGFLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGFG----------------------------NMAR---------
        + F+  RQILD+ L+A+E ++D++   KKG+V+K+D EKA+D+VDW FLD+V++ KGFG                            N +R         
Subjt:  NGFLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGFG----------------------------NMAR---------

Query:  ----------LGKIATHPIGTSSL----------HVTHLQFVDDTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGC
                  LG++    I T SL           ++HLQF DDT LFF  + +++ KL  I++ F   SGL +N  KS+LLG+ +D+  +     + GC
Subjt:  ----------LGKIATHPIGTSSL----------HVTHLQFVDDTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGC

Query:  RLGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFWE
         +G WP TYLG+PLGG+P+ RSFW PV+++   ++  WK S++S+GGR TLIQ+ LS++PIY+LSL+K P  V+K L+K++RDFFWE
Subjt:  RLGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFWE

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657509.4e-0635Show/hide
Query:  VIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFW
        ++ER+  ++  W+   +S  GR TL +A LS+MP++ +S   LP  ++  LD++ R F W
Subjt:  VIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFW

Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein6.5e-1029.7Show/hide
Query:  VDDKNMEVFTSKFGCRLGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFF
        V D +       F    G  P  YLGLPL       S + P++E+I+ ++  W   ++S  GR  LI + + ++  +++S ++LPS  +K +D I   F 
Subjt:  VDDKNMEVFTSKFGCRLGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSWKYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFF

Query:  W
        W
Subjt:  W


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACTTCCTCCCAACCAACATTGATTGGAGTCGAATTAGTGAAGCTCAAGTGTCCACATTAGAAGTTCCTTTTACGGATGACGAGGTATATATAGCTATCCAATCTTT
GGGGTCGAATGGCTTTTTGCCAAATCGTCAAATCCTGGATGCTTCATTGATTGCAAGTGAGCTGATTGATGACTGGAAACCCTCCAATAAGAAAGGTGTGGTTATAAAGC
TAGATTTAGAAAAAGCTTTTGATAAAGTTGATTGGGATTTTCTGGATGTGGTTGTTCAGGTTAAAGGTTTTGGAAATATGGCGCGGTTGGGTAAGATTGCCACTCACCCT
ATTGGAACCTCTTCTCTGCATGTGACTCATTTGCAATTTGTTGATGATACTTTATTATTCTTTACTTCTAATGCTTCAGCTGTGGATAAACTTTTTGATATTATTAAAAT
CTTTGAGAAGGCATCTGGTTTGAACATTAATTTTGGTAAAAGTGAATTATTGGGGATTAACGTTGATGATAAGAATATGGAAGTTTTCACTTCAAAGTTTGGTTGTAGAC
TTGGAGATTGGCCAACAACTTATCTTGGCCTTCCTTTAGGTGGCAATCCGAAATTACGCTCGTTTTGGCACCCAGTGATTGAAAGAATTCAGAAAAAGCTTCATAGTTGG
AAGTATTCGTACATTTCAAAAGGTGGTAGATATACTCTAATTCAAGCTTCTTTGTCCAACATGCCCATTTATTATCTCTCTTTGTATAAATTACCTTCAAAGGTGGTTAA
AGTTTTGGATAAAATTATTCGTGATTTCTTTTGGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCACTTCCTCCCAACCAACATTGATTGGAGTCGAATTAGTGAAGCTCAAGTGTCCACATTAGAAGTTCCTTTTACGGATGACGAGGTATATATAGCTATCCAATCTTT
GGGGTCGAATGGCTTTTTGCCAAATCGTCAAATCCTGGATGCTTCATTGATTGCAAGTGAGCTGATTGATGACTGGAAACCCTCCAATAAGAAAGGTGTGGTTATAAAGC
TAGATTTAGAAAAAGCTTTTGATAAAGTTGATTGGGATTTTCTGGATGTGGTTGTTCAGGTTAAAGGTTTTGGAAATATGGCGCGGTTGGGTAAGATTGCCACTCACCCT
ATTGGAACCTCTTCTCTGCATGTGACTCATTTGCAATTTGTTGATGATACTTTATTATTCTTTACTTCTAATGCTTCAGCTGTGGATAAACTTTTTGATATTATTAAAAT
CTTTGAGAAGGCATCTGGTTTGAACATTAATTTTGGTAAAAGTGAATTATTGGGGATTAACGTTGATGATAAGAATATGGAAGTTTTCACTTCAAAGTTTGGTTGTAGAC
TTGGAGATTGGCCAACAACTTATCTTGGCCTTCCTTTAGGTGGCAATCCGAAATTACGCTCGTTTTGGCACCCAGTGATTGAAAGAATTCAGAAAAAGCTTCATAGTTGG
AAGTATTCGTACATTTCAAAAGGTGGTAGATATACTCTAATTCAAGCTTCTTTGTCCAACATGCCCATTTATTATCTCTCTTTGTATAAATTACCTTCAAAGGTGGTTAA
AGTTTTGGATAAAATTATTCGTGATTTCTTTTGGGAATGA
Protein sequenceShow/hide protein sequence
MHFLPTNIDWSRISEAQVSTLEVPFTDDEVYIAIQSLGSNGFLPNRQILDASLIASELIDDWKPSNKKGVVIKLDLEKAFDKVDWDFLDVVVQVKGFGNMARLGKIATHP
IGTSSLHVTHLQFVDDTLLFFTSNASAVDKLFDIIKIFEKASGLNINFGKSELLGINVDDKNMEVFTSKFGCRLGDWPTTYLGLPLGGNPKLRSFWHPVIERIQKKLHSW
KYSYISKGGRYTLIQASLSNMPIYYLSLYKLPSKVVKVLDKIIRDFFWE